Mercurial > repos > galaxy-australia > dorado_pod5_convert
changeset 3:1145758d2f0b draft
planemo upload for repository https://github.com/usegalaxy-au/tools-au/tree/master/tools/dorado commit 6961f310fe940d649523c4468ea35323b3eff257
| author | galaxy-australia |
|---|---|
| date | Tue, 22 Oct 2024 22:32:22 +0000 |
| parents | 7c47b3c9e493 |
| children | 3479b06460a4 |
| files | dorado_pod5_convert.xml macros.xml test-data/dorado_models.loc tool-data/dorado_models.loc.sample |
| diffstat | 4 files changed, 175 insertions(+), 120 deletions(-) [+] |
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--- a/dorado_pod5_convert.xml Tue Aug 06 08:03:34 2024 +0000 +++ b/dorado_pod5_convert.xml Tue Oct 22 22:32:22 2024 +0000 @@ -55,4 +55,5 @@ Galaxy. ]]></help> + <expand macro="citation"/> </tool>
--- a/macros.xml Tue Aug 06 08:03:34 2024 +0000 +++ b/macros.xml Tue Oct 22 22:32:22 2024 +0000 @@ -1,7 +1,7 @@ <macros> <!-- UPDATING: pull the latest container and check the version. Update both tokens. You MUST also update the model list. See README.md for more. --> - <token name="@VERSION@">0.7.3+6e6c45c</token> - <token name="@CONTAINER_HASH@">4fa3fd6a5b5ed1b6256500c4368f7dae9c43df97</token> + <token name="@VERSION@">0.8.2+6b413c9</token> + <token name="@CONTAINER_HASH@">ae1d5e75f94041e4fd7af4a7ed6e6432b0eaea29</token> <xml name="requirements"> <requirements> <container type="docker">nanoporetech/dorado:sha@CONTAINER_HASH@</container> @@ -12,4 +12,16 @@ <xref type="bio.tools">dorado</xref> </xrefs> </xml> + <xml name="citation"> + <citations> + <citation type="bibtex"> + @misc{dorado, + title = {Dorado}, + author = {{Oxford Nanopore}}, + year = {2024}, + url = {https://github.com/nanoporetech/dorado/}, + } + </citation> + </citations> + </xml> </macros>
--- a/test-data/dorado_models.loc Tue Aug 06 08:03:34 2024 +0000 +++ b/test-data/dorado_models.loc Tue Oct 22 22:32:22 2024 +0000 @@ -1,59 +1,80 @@ -4fa3fd6a5b5ed1b6256500c4368f7dae9c43df97_dna_r9.4.1_e8_fast@v3.4 4fa3fd6a5b5ed1b6256500c4368f7dae9c43df97 dna_r9.4.1_e8_fast@v3.4 /models/dna_r9.4.1_e8_fast@v3.4 -4fa3fd6a5b5ed1b6256500c4368f7dae9c43df97_dna_r9.4.1_e8_fast@v3.4_5mCG@v0.1 4fa3fd6a5b5ed1b6256500c4368f7dae9c43df97 dna_r9.4.1_e8_fast@v3.4_5mCG@v0.1 /models/dna_r9.4.1_e8_fast@v3.4_5mCG@v0.1 -4fa3fd6a5b5ed1b6256500c4368f7dae9c43df97_dna_r9.4.1_e8_fast@v3.4_5mCG_5hmCG@v0 4fa3fd6a5b5ed1b6256500c4368f7dae9c43df97 dna_r9.4.1_e8_fast@v3.4_5mCG_5hmCG@v0 /models/dna_r9.4.1_e8_fast@v3.4_5mCG_5hmCG@v0 -4fa3fd6a5b5ed1b6256500c4368f7dae9c43df97_dna_r9.4.1_e8_hac@v3.3 4fa3fd6a5b5ed1b6256500c4368f7dae9c43df97 dna_r9.4.1_e8_hac@v3.3 /models/dna_r9.4.1_e8_hac@v3.3 -4fa3fd6a5b5ed1b6256500c4368f7dae9c43df97_dna_r9.4.1_e8_hac@v3.3_5mCG@v0.1 4fa3fd6a5b5ed1b6256500c4368f7dae9c43df97 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