Mercurial > repos > galaxy-australia > hifiadapterfilt
diff hifiadapterfilt.xml @ 2:03acc0e3772e draft default tip
"planemo upload for repository https://github.com/usegalaxy-au/tools-au/tree/master/tools/hifiadapter commit db087ed782a52833a02df3bfef0793b4dd909081"
| author | galaxy-australia |
|---|---|
| date | Wed, 16 Nov 2022 06:19:15 +0000 |
| parents | 41f5b4a4eac0 |
| children |
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--- a/hifiadapterfilt.xml Wed Sep 14 02:37:39 2022 +0000 +++ b/hifiadapterfilt.xml Wed Nov 16 06:19:15 2022 +0000 @@ -10,17 +10,15 @@ <expand macro="stdio" /> <command><![CDATA[ - @CLEAN_EXT@ - #if $input_file.is_of_type("fastq.gz"): - #set $inputfile = $clean_ext($input_file.element_identifier) + '.fastq.gz' - #set prefix = $clean_ext($input_file.element_identifier) + #set $inputfile = "input" + '.fastq.gz' + #set prefix = "input" #elif $input_file.is_of_type("fastq"): - #set $inputfile = $clean_ext($input_file.element_identifier) + '.fastq' - #set prefix = $clean_ext($input_file.element_identifier) + #set $inputfile = "input" + '.fastq' + #set prefix = "input" #elif $input_file.is_of_type("bam"): - #set $inputfile = $clean_ext($input_file.element_identifier) + '.bam' - #set prefix = $clean_ext($input_file.element_identifier) + #set $inputfile = "input" + '.bam' + #set prefix = "input" #end if ln -s '${input_file}' '${inputfile}' && @@ -86,7 +84,7 @@ **Contributor** -Galaxy Australia wrapped the HiFiadapterFilt: the original software is available in this Github repository `Github <https://github.com/sheinasim/HiFiAdapterFilt>`_. +Galaxy Australia wrapped the HiFiadapterFilt: the original software is available in this `Github repository <https://github.com/sheinasim/HiFiAdapterFilt>`_. **References**