Mercurial > repos > galaxy-australia > panaroo
comparison macros.xml @ 0:01864c78c5a5 draft default tip
planemo upload for repository https://github.com/usegalaxy-au/tools-au/tree/master/tools/panaroo commit 3be367228b531c346c10700f07d57ae44394be36-dirty
| author | galaxy-australia |
|---|---|
| date | Tue, 27 Aug 2024 05:51:12 +0000 |
| parents | |
| children |
comparison
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| -1:000000000000 | 0:01864c78c5a5 |
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| 1 <macros> | |
| 2 <token name="@TOOL_VERSION@">1.5.0</token> | |
| 3 <token name="@VERSION_SUFFIX@">0</token> | |
| 4 <token name="@PROFILE@">22.05</token> | |
| 5 <xml name="edam_ontology"> | |
| 6 <edam_topics> | |
| 7 <edam_topic>topic_0194</edam_topic> | |
| 8 </edam_topics> | |
| 9 </xml> | |
| 10 <xml name="biotools"> | |
| 11 <xrefs> | |
| 12 <xref type="bio.tools">panaroo</xref> | |
| 13 </xrefs> | |
| 14 </xml> | |
| 15 <xml name="requirements"> | |
| 16 <requirements> | |
| 17 <requirement type="package" version="@TOOL_VERSION@">panaroo</requirement> | |
| 18 <requirement type="package" version="170427">prank</requirement> | |
| 19 </requirements> | |
| 20 </xml> | |
| 21 <xml name="clean_mode"> | |
| 22 <option value="strict">strict</option> | |
| 23 <option value="moderate">moderate</option> | |
| 24 <option value="sensitive">sensitive</option> | |
| 25 </xml> | |
| 26 <xml name="genetic_code"> | |
| 27 <option value="1">1. Standard</option> | |
| 28 <option value="2">2. Vertebrate Mitochondrial</option> | |
| 29 <option value="3">3. Yeast Mitochondrial</option> | |
| 30 <option value="4">4. Mold, Protozoan, and Coelenterate Mitochondrial Code and the Mycoplasma/Spiroplasma Code</option> | |
| 31 <option value="5">5. Invertebrate Mitochondrial</option> | |
| 32 <option value="6">6. Ciliate, Dasycladacean and Hexamita Nuclear Code</option> | |
| 33 <option value="9">9. Echinoderm Mitochondrial</option> | |
| 34 <option value="10">10. Euplotid Nuclear</option> | |
| 35 <option value="11" selected="True">11. Bacteria and Archaea</option> | |
| 36 <option value="12">12. Alternative Yeast Nuclear</option> | |
| 37 <option value="13">13. Ascidian Mitochondrial</option> | |
| 38 <option value="14">14. Flatworm Mitochondrial</option> | |
| 39 <option value="15">15. Blepharisma Macronuclear</option> | |
| 40 <option value="16">16. Chlorophycean Mitochondrial</option> | |
| 41 <option value="21">21. Trematode Mitochondrial</option> | |
| 42 <option value="22">22. Scenedesmus obliquus mitochondrial</option> | |
| 43 <option value="23">23. Thraustochytrium Mitochondrial</option> | |
| 44 <option value="24">24. Pterobranchia mitochondrial</option> | |
| 45 <option value="25">25. Candidate Division SR1 and Gracilibacteria Code</option> | |
| 46 <option value="26">26. Pachysolen tannophilus Nuclear Code</option> | |
| 47 <option value="27">27. Karyorelict Nuclear Code</option> | |
| 48 <option value="28">28. Condylostoma Nuclear Code</option> | |
| 49 <option value="29">29. Mesodinium Nuclear Code</option> | |
| 50 <option value="30">30. Peritrich Nuclear Code</option> | |
| 51 <option value="31">31. Blastocrithidia Nuclear Code</option> | |
| 52 <option value="33">33. Cephalodiscidae Mitochondrial UAA-Tyr Code</option> | |
| 53 </xml> | |
| 54 <xml name="refind_mode_option"> | |
| 55 <option value="default" selected="True">default</option> | |
| 56 <option value="strict">strict</option> | |
| 57 <option value="off">off</option> | |
| 58 </xml> | |
| 59 <xml name="gene_alignment"> | |
| 60 <option value="None" selected="True">None</option> | |
| 61 <option value="core">core</option> | |
| 62 <option value="pan">pan</option> | |
| 63 </xml> | |
| 64 <xml name="gene_aligner"> | |
| 65 <option value="mafft" selected="True">mafft</option> | |
| 66 <option value="prank">prank</option> | |
| 67 </xml> | |
| 68 </macros> |