Mercurial > repos > galaxy-australia > panaroo
diff macros.xml @ 1:c68a35962d6e draft default tip
planemo upload for repository https://github.com/usegalaxy-au/tools-au/tree/master/tools/panaroo commit 23afccfad9fc0d2a4b91fd391f4847062fd98042
| author | iuc |
|---|---|
| date | Fri, 11 Apr 2025 11:24:05 +0000 |
| parents | 01864c78c5a5 |
| children |
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--- a/macros.xml Tue Aug 27 05:51:12 2024 +0000 +++ b/macros.xml Fri Apr 11 11:24:05 2025 +0000 @@ -1,68 +1,51 @@ <macros> - <token name="@TOOL_VERSION@">1.5.0</token> - <token name="@VERSION_SUFFIX@">0</token> - <token name="@PROFILE@">22.05</token> + <token name="@TOOL_VERSION@">1.5.2</token> + <token name="@VERSION_SUFFIX@">0</token> + <token name="@PROFILE@">23.2</token> <xml name="edam_ontology"> - <edam_topics> - <edam_topic>topic_0194</edam_topic> - </edam_topics> + <edam_topics> + <edam_topic>topic_0080</edam_topic> + <edam_topic>topic_0194</edam_topic> + </edam_topics> </xml> - <xml name="biotools"> - <xrefs> - <xref type="bio.tools">panaroo</xref> - </xrefs> - </xml> + <xml name="biotools"> + <xrefs> + <xref type="bio.tools">panaroo</xref> + </xrefs> + </xml> <xml name="requirements"> - <requirements> - <requirement type="package" version="@TOOL_VERSION@">panaroo</requirement> - <requirement type="package" version="170427">prank</requirement> - </requirements> - </xml> - <xml name="clean_mode"> - <option value="strict">strict</option> - <option value="moderate">moderate</option> - <option value="sensitive">sensitive</option> - </xml> + <requirements> + <requirement type="package" version="@TOOL_VERSION@">panaroo</requirement> + <requirement type="package" version="170427">prank</requirement> + <requirement type="package" version="1.2.4">clustalo</requirement> + </requirements> + </xml> <xml name="genetic_code"> - <option value="1">1. Standard</option> - <option value="2">2. Vertebrate Mitochondrial</option> - <option value="3">3. Yeast Mitochondrial</option> - <option value="4">4. Mold, Protozoan, and Coelenterate Mitochondrial Code and the Mycoplasma/Spiroplasma Code</option> - <option value="5">5. Invertebrate Mitochondrial</option> - <option value="6">6. Ciliate, Dasycladacean and Hexamita Nuclear Code</option> - <option value="9">9. Echinoderm Mitochondrial</option> - <option value="10">10. Euplotid Nuclear</option> - <option value="11" selected="True">11. Bacteria and Archaea</option> - <option value="12">12. Alternative Yeast Nuclear</option> - <option value="13">13. Ascidian Mitochondrial</option> - <option value="14">14. Flatworm Mitochondrial</option> - <option value="15">15. Blepharisma Macronuclear</option> - <option value="16">16. Chlorophycean Mitochondrial</option> - <option value="21">21. Trematode Mitochondrial</option> - <option value="22">22. Scenedesmus obliquus mitochondrial</option> - <option value="23">23. Thraustochytrium Mitochondrial</option> - <option value="24">24. Pterobranchia mitochondrial</option> - <option value="25">25. Candidate Division SR1 and Gracilibacteria Code</option> - <option value="26">26. Pachysolen tannophilus Nuclear Code</option> - <option value="27">27. Karyorelict Nuclear Code</option> - <option value="28">28. Condylostoma Nuclear Code</option> - <option value="29">29. Mesodinium Nuclear Code</option> - <option value="30">30. Peritrich Nuclear Code</option> - <option value="31">31. Blastocrithidia Nuclear Code</option> - <option value="33">33. Cephalodiscidae Mitochondrial UAA-Tyr Code</option> - </xml> - <xml name="refind_mode_option"> - <option value="default" selected="True">default</option> - <option value="strict">strict</option> - <option value="off">off</option> - </xml> - <xml name="gene_alignment"> - <option value="None" selected="True">None</option> - <option value="core">core</option> - <option value="pan">pan</option> - </xml> - <xml name="gene_aligner"> - <option value="mafft" selected="True">mafft</option> - <option value="prank">prank</option> + <option value="1">1. Standard</option> + <option value="2">2. Vertebrate Mitochondrial</option> + <option value="3">3. Yeast Mitochondrial</option> + <option value="4">4. Mold, Protozoan, and Coelenterate Mitochondrial Code and the Mycoplasma/Spiroplasma Code</option> + <option value="5">5. Invertebrate Mitochondrial</option> + <option value="6">6. Ciliate, Dasycladacean and Hexamita Nuclear Code</option> + <option value="9">9. Echinoderm Mitochondrial</option> + <option value="10">10. Euplotid Nuclear</option> + <option value="11" selected="True">11. Bacteria and Archaea</option> + <option value="12">12. Alternative Yeast Nuclear</option> + <option value="13">13. Ascidian Mitochondrial</option> + <option value="14">14. Flatworm Mitochondrial</option> + <option value="15">15. Blepharisma Macronuclear</option> + <option value="16">16. Chlorophycean Mitochondrial</option> + <option value="21">21. Trematode Mitochondrial</option> + <option value="22">22. Scenedesmus obliquus mitochondrial</option> + <option value="23">23. Thraustochytrium Mitochondrial</option> + <option value="24">24. Pterobranchia mitochondrial</option> + <option value="25">25. Candidate Division SR1 and Gracilibacteria Code</option> + <option value="26">26. Pachysolen tannophilus Nuclear Code</option> + <option value="27">27. Karyorelict Nuclear Code</option> + <option value="28">28. Condylostoma Nuclear Code</option> + <option value="29">29. Mesodinium Nuclear Code</option> + <option value="30">30. Peritrich Nuclear Code</option> + <option value="31">31. Blastocrithidia Nuclear Code</option> + <option value="33">33. Cephalodiscidae Mitochondrial UAA-Tyr Code</option> </xml> </macros>