Mercurial > repos > galaxy-australia > pbccs
comparison macros.xml @ 0:f159c3da2ffc draft default tip
"planemo upload for repository https://github.com/usegalaxy-au/tools-au/tree/master/tools/pbccs commit 5ba0af2de1e1ce7b7a8ed3eb4042f5fec366c234"
author | galaxy-australia |
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date | Fri, 18 Mar 2022 02:10:52 +0000 |
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1 | |
2 <macros> | |
3 <token name="@TOOL_VERSION@">3.4.1</token> | |
4 <xml name="requirements"> | |
5 <requirements> | |
6 <requirement type="package" version="@TOOL_VERSION@">pbccs</requirement> | |
7 </requirements> | |
8 </xml> | |
9 <xml name="version_command"> | |
10 <version_command>@HEADLESS@ ccs --version</version_command> | |
11 </xml> | |
12 <token name="@HEADLESS@"><![CDATA[export QT_QPA_PLATFORM='offscreen' &&]]></token> | |
13 <token name="@PBCCS_OVERVIEW@"> | |
14 | |
15 **Generate Highly Accurate Single-Molecule Consensus Reads (CCS) Overview** | |
16 | |
17 CCS combines multiple subreads of the same SMRTbell molecule using a statistical model to produce one highly accurate consensus sequence, also called a HiFi read, along with base quality values. This tool powers the Circular Consensus Sequencing workflow in SMRT Link. | |
18 | |
19 | |
20 CCS works with PacBio subreads bam (subreads.bam) files. For more information about this file format, see here_ | |
21 | |
22 .. _here: https://ccs.how/how-does-ccs-work.html | |
23 </token> | |
24 <xml name="citations"> | |
25 <citations> | |
26 <citation type="doi">10.1016/j.gpb.2015.08.002</citation> | |
27 </citations> | |
28 </xml> | |
29 </macros> |