view macros.xml @ 0:f159c3da2ffc draft default tip

"planemo upload for repository https://github.com/usegalaxy-au/tools-au/tree/master/tools/pbccs commit 5ba0af2de1e1ce7b7a8ed3eb4042f5fec366c234"

<macros>
    <token name="@TOOL_VERSION@">3.4.1</token>
    <xml name="requirements">
        <requirements>
            <requirement type="package" version="@TOOL_VERSION@">pbccs</requirement>
        </requirements>
    </xml>
    <xml name="version_command">
        <version_command>@HEADLESS@ ccs --version</version_command>
    </xml>
    <token name="@HEADLESS@"><![CDATA[export QT_QPA_PLATFORM='offscreen' &&]]></token>
    <token name="@PBCCS_OVERVIEW@">

**Generate Highly Accurate Single-Molecule Consensus Reads (CCS) Overview**

CCS combines multiple subreads of the same SMRTbell molecule using a statistical model to produce one highly accurate consensus sequence, also called a HiFi read, along with base quality values. This tool powers the Circular Consensus Sequencing workflow in SMRT Link.


CCS works with PacBio subreads bam (subreads.bam) files. For more information about this file format, see here_

.. _here: https://ccs.how/how-does-ccs-work.html
    </token>
    <xml name="citations">
        <citations>
            <citation type="doi">10.1016/j.gpb.2015.08.002</citation>
        </citations>
    </xml>
</macros>