# HG changeset patch
# User galaxy-australia
# Date 1757978642 0
# Node ID e3ca8deb9e49e1a911f1c23cc2388c305d8e8cdb
# Parent  501dcf66c0cec74c1b1f36bc6e2921349d6557d5
planemo upload for repository https://github.com/usegalaxy-au/tools-au commit dd2c3490b7b009a8cb452036f04ffa5cf0fb33ca

diff -r 501dcf66c0ce -r e3ca8deb9e49 plot_ragtag_paf.R
--- a/plot_ragtag_paf.R	Sun Oct 20 22:50:00 2024 +0000
+++ b/plot_ragtag_paf.R	Mon Sep 15 23:24:02 2025 +0000
@@ -194,7 +194,7 @@
 y_axis_space <- (total_height - (q_y - t_y)) / 2
 middle_x <- tpaf[1, shift_tstart] + tpaf[.N, pad_tend] / 2
 
-all_contig_names <- c(tpaf[, unique(tname)])
+all_contig_names <- tpaf[, levels(tname)]
 all_colours <- viridis(
     length(all_contig_names) + palette_space + 1
 )
diff -r 501dcf66c0ce -r e3ca8deb9e49 plot_ragtag_paf.xml
--- a/plot_ragtag_paf.xml	Sun Oct 20 22:50:00 2024 +0000
+++ b/plot_ragtag_paf.xml	Mon Sep 15 23:24:02 2025 +0000
@@ -1,4 +1,4 @@
-<tool id="plot_ragtag_paf" name="Plot RagTag output" version="0.0.4" profile="24.1" license="MIT">
+<tool id="plot_ragtag_paf" name="Plot RagTag output" version="0.0.5" profile="24.1" license="MIT">
     <description>to compare query contigs to the reference</description>
     <requirements>
         <container type="docker">ghcr.io/tomharrop/r-containers:r2u_24.04_cv1</container>