view test-data/my_genome_warnings.txt @ 4:5e0825476fb7 draft

planemo upload for repository https://github.com/galaxyproject/tools-iuc commit 72ae2e05f35098c4cb6dd4f038bff07fd36917ed

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## INPUT PROCESSING ##
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## SUMMARY ##
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detecting two smudges at the same positions, not enough data for this number of bins lowering number of bins to 	35
detecting two smudges at the same positions, not enough data for this number of bins lowering number of bins to 	30
detecting two smudges at the same positions, not enough data for this number of bins lowering number of bins to 	25
detecting two smudges at the same positions, not enough data for this number of bins lowering number of bins to 	20
!! Warning, your coverage filter on the lower end (L = 	23	) is higher than half of the 1n coverage estimate ( 1n / 2 = 	12.5
If the real 1n coverage is half of your estimate you would not picked it up due to the filtering.
If you have sufficient coverage, consider reruning the analysis with lower L (something like (1n / 2) - 5)
One good way for verificaiton would be to compare it to GenomeScope estimate of haploid coverage

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## PLOT ##
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