Mercurial > repos > galaxyp > abrf2017_workshop
annotate Galaxy-Workflow-ABRF_2017_Workflow_for_Functional_Comparison.ga @ 1:338a6d724774 draft default tip
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit e81bd1614788b8bfe8752c4a4279abdcc34e9777
author | galaxyp |
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date | Thu, 16 Mar 2017 08:45:23 -0400 |
parents | eb71034189fb |
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rev | line source |
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0
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
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1 { |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
2 "a_galaxy_workflow": "true", |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
3 "annotation": "", |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
4 "format-version": "0.1", |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
5 "name": "ABRF 2017 Workflow for Functional Comparison", |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
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6 "steps": { |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
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7 "0": { |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
8 "annotation": "", |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
9 "content_id": null, |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
10 "id": 0, |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
11 "input_connections": {}, |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
12 "inputs": [ |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
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13 { |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
14 "description": "", |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
15 "name": "Gene Ontology Terms" |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
16 } |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
17 ], |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
18 "label": null, |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
19 "name": "Input dataset", |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
20 "outputs": [], |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
21 "position": { |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
22 "left": 177, |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
23 "top": 188.5 |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
24 }, |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
25 "tool_errors": null, |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
26 "tool_id": null, |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
27 "tool_state": "{\"name\": \"Gene Ontology Terms\"}", |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
28 "tool_version": null, |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
29 "type": "data_input", |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
30 "uuid": "6f5a7554-d201-4f17-8e47-8e07ead87e52", |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
31 "workflow_outputs": [ |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
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32 { |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
33 "label": null, |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
34 "output_name": "output", |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
35 "uuid": "1e545169-c1d0-4da0-9f5d-09632dffbd6a" |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
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36 } |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
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37 ] |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
38 }, |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
39 "1": { |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
40 "annotation": "", |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
41 "content_id": null, |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
42 "id": 1, |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
43 "input_connections": {}, |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
44 "inputs": [ |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
45 { |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
46 "description": "", |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
47 "name": "Bering Strait Pept2Prot (extra fields) Normalized" |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
48 } |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
49 ], |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
50 "label": null, |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
51 "name": "Input dataset", |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
52 "outputs": [], |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
53 "position": { |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
54 "left": 181, |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
55 "top": 264.5 |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
56 }, |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
57 "tool_errors": null, |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
58 "tool_id": null, |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
59 "tool_state": "{\"name\": \"Bering Strait Pept2Prot (extra fields) Normalized\"}", |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
60 "tool_version": null, |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
61 "type": "data_input", |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
62 "uuid": "caae62e0-46f1-4f84-934f-31be41856bb0", |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
63 "workflow_outputs": [ |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
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64 { |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
65 "label": null, |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
66 "output_name": "output", |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
67 "uuid": "27ccf52d-44c0-43eb-bf66-bee437cfbcfa" |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
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68 } |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
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changeset
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69 ] |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
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70 }, |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
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71 "2": { |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
72 "annotation": "", |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
73 "content_id": null, |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
74 "id": 2, |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
75 "input_connections": {}, |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
76 "inputs": [ |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
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77 { |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
78 "description": "", |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
79 "name": "Chukchi Sea Pept2Prot (extra fields) Normalized" |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
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80 } |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
81 ], |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
82 "label": null, |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
83 "name": "Input dataset", |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
84 "outputs": [], |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
85 "position": { |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
86 "left": 185, |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
87 "top": 354.5 |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
88 }, |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
89 "tool_errors": null, |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
90 "tool_id": null, |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
91 "tool_state": "{\"name\": \"Chukchi Sea Pept2Prot (extra fields) Normalized\"}", |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
92 "tool_version": null, |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
93 "type": "data_input", |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
94 "uuid": "3c954f78-1ef3-4cae-bb4e-c768d9904506", |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
95 "workflow_outputs": [ |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
96 { |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
97 "label": null, |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
98 "output_name": "output", |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
99 "uuid": "67cf7d09-93cf-4e90-9f2c-1f9c61973cff" |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
100 } |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
101 ] |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
102 }, |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
103 "3": { |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
104 "annotation": "", |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
105 "content_id": null, |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
106 "id": 3, |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
107 "input_connections": {}, |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
108 "inputs": [ |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
109 { |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
110 "description": "", |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
111 "name": "Bering Strait PSM Report" |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
112 } |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
113 ], |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
114 "label": null, |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
115 "name": "Input dataset", |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
116 "outputs": [], |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
117 "position": { |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
118 "left": 187, |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
119 "top": 442.5 |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
120 }, |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
121 "tool_errors": null, |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
122 "tool_id": null, |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
123 "tool_state": "{\"name\": \"Bering Strait PSM Report\"}", |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
124 "tool_version": null, |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
125 "type": "data_input", |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
126 "uuid": "c9826c72-36c9-498e-af09-3ba77ce79885", |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
127 "workflow_outputs": [ |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
128 { |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
129 "label": null, |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
130 "output_name": "output", |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
131 "uuid": "4c8327ee-cabc-46f6-a3fb-ecf84dca3b8f" |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
132 } |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
133 ] |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
134 }, |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
135 "4": { |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
136 "annotation": "", |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
137 "content_id": null, |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
138 "id": 4, |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
139 "input_connections": {}, |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
140 "inputs": [ |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
141 { |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
142 "description": "", |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
143 "name": "Chukchi Sea PSM Report" |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
144 } |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
145 ], |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
146 "label": null, |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
147 "name": "Input dataset", |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
148 "outputs": [], |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
149 "position": { |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
150 "left": 190, |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
151 "top": 523.5 |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
152 }, |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
153 "tool_errors": null, |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
154 "tool_id": null, |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
155 "tool_state": "{\"name\": \"Chukchi Sea PSM Report\"}", |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
156 "tool_version": null, |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
157 "type": "data_input", |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
158 "uuid": "6f38f059-5513-4705-b3f0-ff2a3aef638e", |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
159 "workflow_outputs": [ |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
160 { |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
161 "label": null, |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
162 "output_name": "output", |
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planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
163 "uuid": "2c42d9b6-7107-4354-81dd-40728115bbb1" |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
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164 } |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
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165 ] |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
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changeset
|
166 }, |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
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|
167 "5": { |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
168 "annotation": "", |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
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|
169 "content_id": "toolshed.g2.bx.psu.edu/repos/jjohnson/query_tabular/query_tabular/2.0.0", |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
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diff
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|
170 "id": 5, |
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planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
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171 "input_connections": { |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
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changeset
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172 "tables_0|table": { |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
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|
173 "id": 0, |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
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174 "output_name": "output" |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
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|
175 }, |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
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|
176 "tables_1|table": { |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
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|
177 "id": 1, |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
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178 "output_name": "output" |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
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179 }, |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
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180 "tables_2|table": { |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
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|
181 "id": 2, |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
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diff
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182 "output_name": "output" |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
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|
183 }, |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
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|
184 "tables_3|table": { |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
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diff
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|
185 "id": 3, |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
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186 "output_name": "output" |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
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|
187 }, |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
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|
188 "tables_4|table": { |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
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|
189 "id": 4, |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
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|
190 "output_name": "output" |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
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|
191 } |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
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|
192 }, |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
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|
193 "inputs": [ |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
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|
194 { |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
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|
195 "description": "runtime parameter for tool Query Tabular", |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
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|
196 "name": "add_to_database" |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
197 } |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
198 ], |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
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|
199 "label": null, |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
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|
200 "name": "Query Tabular", |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
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|
201 "outputs": [ |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
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|
202 { |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
203 "name": "sqlitedb", |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
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|
204 "type": "sqlite" |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
205 }, |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
206 { |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
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|
207 "name": "output", |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
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|
208 "type": "tabular" |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
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|
209 } |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
210 ], |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
211 "position": { |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
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|
212 "left": 440, |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
213 "top": 230 |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
214 }, |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
215 "post_job_actions": { |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
216 "RenameDatasetActionoutput": { |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
217 "action_arguments": { |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
218 "newname": "BIOLOGICAL PROCESS COMPARISON" |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
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|
219 }, |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
220 "action_type": "RenameDatasetAction", |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
221 "output_name": "output" |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
222 } |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
223 }, |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
224 "tool_errors": null, |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
225 "tool_id": "toolshed.g2.bx.psu.edu/repos/jjohnson/query_tabular/query_tabular/2.0.0", |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
226 "tool_shed_repository": { |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
227 "changeset_revision": "ae27dab228b8", |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
228 "name": "query_tabular", |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
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|
229 "owner": "jjohnson", |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
230 "tool_shed": "toolshed.g2.bx.psu.edu" |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
231 }, |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
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|
232 "tool_state": "{\"tables\": \"[{\\\"tbl_opts\\\": {\\\"load_named_columns\\\": \\\"false\\\", \\\"pkey_autoincr\\\": \\\"\\\", \\\"table_name\\\": \\\"go\\\", \\\"col_names\\\": \\\"aspect,go_id,description\\\", \\\"indexes\\\": [{\\\"__index__\\\": 0, \\\"unique\\\": \\\"false\\\", \\\"index_columns\\\": \\\"go_id\\\"}, {\\\"__index__\\\": 1, \\\"unique\\\": \\\"false\\\", \\\"index_columns\\\": \\\"aspect,go_id,description\\\"}]}, \\\"__index__\\\": 0, \\\"input_opts\\\": {\\\"linefilters\\\": []}, \\\"table\\\": {\\\"__class__\\\": \\\"RuntimeValue\\\"}}, {\\\"tbl_opts\\\": {\\\"load_named_columns\\\": \\\"false\\\", \\\"pkey_autoincr\\\": \\\"\\\", \\\"table_name\\\": \\\"bering\\\", \\\"col_names\\\": \\\"peptide,uniprot_id,taxon_id,taxon_name,ec_references,go_reference,refseq_ids,refseq_protein_ids,insdc_ids,insdc_protein_ids\\\", \\\"indexes\\\": [{\\\"__index__\\\": 0, \\\"unique\\\": \\\"false\\\", \\\"index_columns\\\": \\\"go_reference,peptide\\\"}]}, \\\"__index__\\\": 1, \\\"input_opts\\\": {\\\"linefilters\\\": [{\\\"filter\\\": {\\\"comment_char\\\": \\\"#\\\", \\\"__current_case__\\\": 1, \\\"filter_type\\\": \\\"comment\\\"}, \\\"__index__\\\": 0}]}, \\\"table\\\": {\\\"__class__\\\": \\\"RuntimeValue\\\"}}, {\\\"tbl_opts\\\": {\\\"load_named_columns\\\": \\\"false\\\", \\\"pkey_autoincr\\\": \\\"\\\", \\\"table_name\\\": \\\"chukchi\\\", \\\"col_names\\\": \\\"peptide,uniprot_id,taxon_id,taxon_name,ec_references,go_reference,refseq_ids,refseq_protein_ids,insdc_ids,insdc_protein_ids\\\", \\\"indexes\\\": [{\\\"__index__\\\": 0, \\\"unique\\\": \\\"false\\\", \\\"index_columns\\\": \\\"go_reference,peptide\\\"}]}, \\\"__index__\\\": 2, \\\"input_opts\\\": {\\\"linefilters\\\": [{\\\"filter\\\": {\\\"comment_char\\\": \\\"#\\\", \\\"__current_case__\\\": 1, \\\"filter_type\\\": \\\"comment\\\"}, \\\"__index__\\\": 0}]}, \\\"table\\\": {\\\"__class__\\\": \\\"RuntimeValue\\\"}}, {\\\"tbl_opts\\\": {\\\"load_named_columns\\\": \\\"true\\\", \\\"pkey_autoincr\\\": \\\"\\\", \\\"table_name\\\": \\\"bering_psms\\\", \\\"col_names\\\": \\\"id,,sequence,,,,,,,,,,,,,,,,,,,,confidence,validation\\\", \\\"indexes\\\": []}, \\\"__index__\\\": 3, \\\"input_opts\\\": {\\\"linefilters\\\": [{\\\"filter\\\": {\\\"regex_action\\\": \\\"include_match\\\", \\\"regex_pattern\\\": \\\"^\\\\\\\\d\\\", \\\"__current_case__\\\": 2, \\\"filter_type\\\": \\\"regex\\\"}, \\\"__index__\\\": 0}]}, \\\"table\\\": {\\\"__class__\\\": \\\"RuntimeValue\\\"}}, {\\\"tbl_opts\\\": {\\\"load_named_columns\\\": \\\"true\\\", \\\"pkey_autoincr\\\": \\\"\\\", \\\"table_name\\\": \\\"chukchi_psms\\\", \\\"col_names\\\": \\\"id,,sequence,,,,,,,,,,,,,,,,,,,,confidence,validation\\\", \\\"indexes\\\": []}, \\\"__index__\\\": 4, \\\"input_opts\\\": {\\\"linefilters\\\": [{\\\"filter\\\": {\\\"regex_action\\\": \\\"include_match\\\", \\\"regex_pattern\\\": \\\"^\\\\\\\\d\\\", \\\"__current_case__\\\": 2, \\\"filter_type\\\": \\\"regex\\\"}, \\\"__index__\\\": 0}]}, \\\"table\\\": {\\\"__class__\\\": \\\"RuntimeValue\\\"}}]\", \"save_db\": \"\\\"true\\\"\", \"__page__\": 0, \"__rerun_remap_job_id__\": null, \"no_header\": \"\\\"false\\\"\", \"sqlquery\": \"\\\"SELECT g.description, count(distinct b.peptide) as \\\\\\\"bering_peptides\\\\\\\",count(distinct c.peptide) as \\\\\\\"chukchi_peptides\\\\\\\",\\\\ncount(distinct b.id)*1.42 as \\\\\\\"bering_psms\\\\\\\", count(distinct c.id) as \\\\\\\"chukchi_psms\\\\\\\"\\\\n FROM go as g LEFT OUTER JOIN\\\\n ( SELECT go.description, bering.peptide, bering_psms.id\\\\n FROM go LEFT OUTER JOIN bering ON go.go_id = bering.go_reference JOIN bering_psms ON bering.peptide = bering_psms.sequence\\\\n GROUP BY go.description, bering.peptide, bering_psms.id\\\\n ) as b ON g.description = b.description LEFT OUTER JOIN\\\\n ( SELECT go.description, chukchi.peptide, chukchi_psms.id\\\\n FROM go LEFT OUTER JOIN chukchi ON go.go_id = chukchi.go_reference JOIN chukchi_psms ON chukchi.peptide = chukchi_psms.sequence\\\\n GROUP BY go.description, chukchi.peptide, chukchi_psms.id\\\\n ) as c ON g.description = c.description\\\\nWHERE g.aspect = 'biological_process'\\\\nGROUP BY g.description\\\\nORDER BY abs(bering_peptides - chukchi_peptides) desc, bering_peptides desc,chukchi_peptides desc\\\"\", \"add_to_database\": \"{\\\"withdb\\\": {\\\"__class__\\\": \\\"RuntimeValue\\\"}}\", \"workdb\": \"\\\"workdb.sqlite\\\"\"}", |
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233 "tool_version": "2.0.0", |
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234 "type": "tool", |
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235 "uuid": "42fb8bde-03c9-4e9d-b003-55d01bb306d6", |
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236 "workflow_outputs": [ |
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237 { |
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238 "label": null, |
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239 "output_name": "output", |
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240 "uuid": "369c85d5-6d8f-45ca-8f55-01dddce5a4e9" |
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241 }, |
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planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
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242 { |
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243 "label": null, |
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244 "output_name": "sqlitedb", |
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245 "uuid": "fb8dd73d-95c9-48c8-945c-07adf0b13dab" |
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246 } |
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247 ] |
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248 }, |
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planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
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249 "6": { |
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250 "annotation": "", |
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planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
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251 "content_id": "toolshed.g2.bx.psu.edu/repos/jjohnson/sqlite_to_tabular/sqlite_to_tabular/0.0.1", |
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252 "id": 6, |
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253 "input_connections": { |
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254 "sqlitedb": { |
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255 "id": 5, |
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256 "output_name": "sqlitedb" |
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257 } |
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258 }, |
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259 "inputs": [ |
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260 { |
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261 "description": "runtime parameter for tool SQLite to tabular", |
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262 "name": "sqlitedb" |
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263 } |
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264 ], |
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planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
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265 "label": null, |
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266 "name": "SQLite to tabular", |
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267 "outputs": [ |
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268 { |
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269 "name": "query_results", |
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270 "type": "tabular" |
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271 } |
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272 ], |
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273 "position": { |
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274 "left": 874, |
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275 "top": 204 |
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276 }, |
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277 "post_job_actions": { |
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278 "RenameDatasetActionquery_results": { |
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279 "action_arguments": { |
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280 "newname": "MOLECULAR FUNCTION COMPARISON" |
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281 }, |
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282 "action_type": "RenameDatasetAction", |
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283 "output_name": "query_results" |
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284 } |
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285 }, |
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286 "tool_errors": null, |
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287 "tool_id": "toolshed.g2.bx.psu.edu/repos/jjohnson/sqlite_to_tabular/sqlite_to_tabular/0.0.1", |
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288 "tool_shed_repository": { |
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289 "changeset_revision": "78e9570fbe08", |
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290 "name": "sqlite_to_tabular", |
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291 "owner": "jjohnson", |
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292 "tool_shed": "toolshed.g2.bx.psu.edu" |
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293 }, |
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294 "tool_state": "{\"sqlquery\": \"\\\"SELECT g.description, count(distinct b.peptide) as \\\\\\\"bering_peptides\\\\\\\",count(distinct c.peptide) as \\\\\\\"chukchi_peptides\\\\\\\", count(distinct b.id)*1.42 as \\\\\\\"bering_psms\\\\\\\", count(distinct c.id) as \\\\\\\"chukchi_psms\\\\\\\"\\\\nFROM go as g LEFT OUTER JOIN\\\\n ( SELECT go.description, bering.peptide, bering_psms.id\\\\n FROM go LEFT OUTER JOIN bering ON go.go_id = bering.go_reference JOIN bering_psms ON bering.peptide = bering_psms.sequence\\\\n GROUP BY go.description, bering.peptide, bering_psms.id\\\\n ) as b ON g.description = b.description LEFT OUTER JOIN\\\\n ( SELECT go.description, chukchi.peptide, chukchi_psms.id\\\\n FROM go LEFT OUTER JOIN chukchi ON go.go_id = chukchi.go_reference JOIN chukchi_psms ON chukchi.peptide = chukchi_psms.sequence\\\\n GROUP BY go.description, chukchi.peptide, chukchi_psms.id\\\\n ) as c ON g.description = c.description\\\\nWHERE g.aspect = 'molecular_function'\\\\nGROUP BY g.description\\\\nORDER BY abs(bering_peptides - chukchi_peptides) desc, bering_peptides desc,chukchi_peptides desc\\\"\", \"__page__\": 0, \"sqlitedb\": \"{\\\"__class__\\\": \\\"RuntimeValue\\\"}\", \"__rerun_remap_job_id__\": null, \"no_header\": \"\\\"false\\\"\"}", |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
295 "tool_version": "0.0.1", |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
296 "type": "tool", |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
297 "uuid": "ee7d5bd3-d2c4-4653-bd55-fa236abfc7f8", |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
298 "workflow_outputs": [ |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
299 { |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
300 "label": null, |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
301 "output_name": "query_results", |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
302 "uuid": "90cf3457-65be-474d-a43f-ead52ad50e21" |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
303 } |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
304 ] |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
305 }, |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
306 "7": { |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
307 "annotation": "", |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
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diff
changeset
|
308 "content_id": "toolshed.g2.bx.psu.edu/repos/jjohnson/sqlite_to_tabular/sqlite_to_tabular/0.0.1", |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
309 "id": 7, |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
310 "input_connections": { |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
311 "sqlitedb": { |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
312 "id": 5, |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
313 "output_name": "sqlitedb" |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
314 } |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
315 }, |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
316 "inputs": [ |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
317 { |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
318 "description": "runtime parameter for tool SQLite to tabular", |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
319 "name": "sqlitedb" |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
320 } |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
321 ], |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
322 "label": null, |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
323 "name": "SQLite to tabular", |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
324 "outputs": [ |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
325 { |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
326 "name": "query_results", |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
327 "type": "tabular" |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
328 } |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
329 ], |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
330 "position": { |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
331 "left": 876, |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
332 "top": 342 |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
333 }, |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
334 "post_job_actions": { |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
335 "RenameDatasetActionquery_results": { |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
336 "action_arguments": { |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
337 "newname": "CELLULAR COMPONENT COMPARISON" |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
338 }, |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
339 "action_type": "RenameDatasetAction", |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
340 "output_name": "query_results" |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
341 } |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
342 }, |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
343 "tool_errors": null, |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
344 "tool_id": "toolshed.g2.bx.psu.edu/repos/jjohnson/sqlite_to_tabular/sqlite_to_tabular/0.0.1", |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
345 "tool_shed_repository": { |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
346 "changeset_revision": "78e9570fbe08", |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
347 "name": "sqlite_to_tabular", |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
348 "owner": "jjohnson", |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
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|
349 "tool_shed": "toolshed.g2.bx.psu.edu" |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
350 }, |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
351 "tool_state": "{\"sqlquery\": \"\\\"SELECT g.description, count(distinct b.peptide) as \\\\\\\"bering_peptides\\\\\\\",count(distinct c.peptide) as \\\\\\\"chukchi_peptides\\\\\\\", count(distinct b.id)*1.42 as \\\\\\\"bering_psms\\\\\\\", count(distinct c.id) as \\\\\\\"chukchi_psms\\\\\\\"\\\\nFROM go as g LEFT OUTER JOIN\\\\n ( SELECT go.description, bering.peptide, bering_psms.id\\\\n FROM go LEFT OUTER JOIN bering ON go.go_id = bering.go_reference JOIN bering_psms ON bering.peptide = bering_psms.sequence\\\\n GROUP BY go.description, bering.peptide, bering_psms.id\\\\n ) as b ON g.description = b.description LEFT OUTER JOIN\\\\n ( SELECT go.description, chukchi.peptide, chukchi_psms.id\\\\n FROM go LEFT OUTER JOIN chukchi ON go.go_id = chukchi.go_reference JOIN chukchi_psms ON chukchi.peptide = chukchi_psms.sequence\\\\n GROUP BY go.description, chukchi.peptide, chukchi_psms.id\\\\n ) as c ON g.description = c.description\\\\nWHERE g.aspect = 'cellular_component'\\\\nGROUP BY g.description\\\\nORDER BY abs(bering_peptides - chukchi_peptides) desc, bering_peptides desc,chukchi_peptides desc\\\"\", \"__page__\": 0, \"sqlitedb\": \"{\\\"__class__\\\": \\\"RuntimeValue\\\"}\", \"__rerun_remap_job_id__\": null, \"no_header\": \"\\\"false\\\"\"}", |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
352 "tool_version": "0.0.1", |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
353 "type": "tool", |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
354 "uuid": "d0f27344-2721-47e3-891a-0a9288293945", |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
355 "workflow_outputs": [ |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
356 { |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
357 "label": null, |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
358 "output_name": "query_results", |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
359 "uuid": "80f8307d-68d7-4a49-bae8-b43957dd3098" |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
360 } |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
361 ] |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
362 }, |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
363 "8": { |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
364 "annotation": "", |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
365 "content_id": "toolshed.g2.bx.psu.edu/repos/jjohnson/sqlite_to_tabular/sqlite_to_tabular/0.0.1", |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
366 "id": 8, |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
367 "input_connections": { |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
368 "sqlitedb": { |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
369 "id": 5, |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
370 "output_name": "sqlitedb" |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
371 } |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
372 }, |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
373 "inputs": [ |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
374 { |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
375 "description": "runtime parameter for tool SQLite to tabular", |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
376 "name": "sqlitedb" |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
377 } |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
378 ], |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
379 "label": null, |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
380 "name": "SQLite to tabular", |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
381 "outputs": [ |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
382 { |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
383 "name": "query_results", |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
384 "type": "tabular" |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
385 } |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
386 ], |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
387 "position": { |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
388 "left": 883, |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
389 "top": 457.5 |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
390 }, |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
391 "post_job_actions": { |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
392 "RenameDatasetActionquery_results": { |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
393 "action_arguments": { |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
394 "newname": "PEPTIDE PSM COUNTS COMPARISON" |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
395 }, |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
396 "action_type": "RenameDatasetAction", |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
397 "output_name": "query_results" |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
398 } |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
399 }, |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
400 "tool_errors": null, |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
401 "tool_id": "toolshed.g2.bx.psu.edu/repos/jjohnson/sqlite_to_tabular/sqlite_to_tabular/0.0.1", |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
402 "tool_shed_repository": { |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
403 "changeset_revision": "78e9570fbe08", |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
404 "name": "sqlite_to_tabular", |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
405 "owner": "jjohnson", |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
406 "tool_shed": "toolshed.g2.bx.psu.edu" |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
407 }, |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
408 "tool_state": "{\"sqlquery\": \"\\\"SELECT peptides.peptide, count(bering_psms.id)*1.42 as \\\\\\\"BeringStrait_PSMs\\\\\\\", count(chukchi_psms.id) as \\\\\\\"ChukchiSea_PSMs\\\\\\\"\\\\nFROM \\\\n(SELECT distinct sequence \\\\\\\"peptide\\\\\\\" FROM bering_psms UNION SELECT sequence as \\\\\\\"peptide\\\\\\\" FROM chukchi_psms) as peptides\\\\nLEFT JOIN bering_psms ON peptides.peptide = bering_psms.sequence\\\\nLEFT JOIN chukchi_psms ON peptides.peptide = chukchi_psms.sequence\\\\nGROUP BY peptides.peptide\\\\nORDER BY peptides.peptide\\\\n\\\"\", \"__page__\": 0, \"sqlitedb\": \"{\\\"__class__\\\": \\\"RuntimeValue\\\"}\", \"__rerun_remap_job_id__\": null, \"no_header\": \"\\\"false\\\"\"}", |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
409 "tool_version": "0.0.1", |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
410 "type": "tool", |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
411 "uuid": "a3b80420-6655-4acf-b62b-dcb4ac5d9c6e", |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
412 "workflow_outputs": [ |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
413 { |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
414 "label": null, |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
415 "output_name": "query_results", |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
416 "uuid": "a9b9c19b-8ab2-4f08-9c1f-73e6991f58f9" |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
417 } |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
418 ] |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
419 } |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
420 }, |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
421 "uuid": "9f54fdad-4b9b-4389-8c3a-4512f0cf8df5" |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
422 } |