Mercurial > repos > galaxyp > abrf2017_workshop
annotate Galaxy-Workflow-ABRF_UNIPEPT__Peptide_GO_Annotation_Step1.ga @ 1:338a6d724774 draft default tip
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit e81bd1614788b8bfe8752c4a4279abdcc34e9777
author | galaxyp |
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date | Thu, 16 Mar 2017 08:45:23 -0400 |
parents | eb71034189fb |
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rev | line source |
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eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
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1 { |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
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changeset
|
2 "a_galaxy_workflow": "true", |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
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changeset
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3 "annotation": "", |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
4 "format-version": "0.1", |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
5 "name": "ABRF UNIPEPT: Peptide GO Annotation Step1", |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
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6 "steps": { |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
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7 "0": { |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
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8 "annotation": "", |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
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9 "content_id": null, |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
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10 "id": 0, |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
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11 "input_connections": {}, |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
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12 "inputs": [ |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
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changeset
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13 { |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
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14 "description": "", |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
15 "name": "PSM Report" |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
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16 } |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
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17 ], |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
18 "label": null, |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
19 "name": "Input dataset", |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
20 "outputs": [], |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
21 "position": { |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
22 "left": 204, |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
23 "top": 200 |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
24 }, |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
25 "tool_errors": null, |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
26 "tool_id": null, |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
27 "tool_state": "{\"name\": \"PSM Report\"}", |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
28 "tool_version": null, |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
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29 "type": "data_input", |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
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30 "uuid": "19976c04-5769-48c8-a26f-931d821db5df", |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
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31 "workflow_outputs": [ |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
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32 { |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
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33 "label": null, |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
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34 "output_name": "output", |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
35 "uuid": "62d54f79-3123-4816-98c8-2746e1570ec3" |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
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36 } |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
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changeset
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37 ] |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
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38 }, |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
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39 "1": { |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
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40 "annotation": "", |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
41 "content_id": "toolshed.g2.bx.psu.edu/repos/jjohnson/query_tabular/query_tabular/2.0.0", |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
42 "id": 1, |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
43 "input_connections": { |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
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44 "tables_0|table": { |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
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45 "id": 0, |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
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46 "output_name": "output" |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
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47 } |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
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48 }, |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
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49 "inputs": [ |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
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50 { |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
51 "description": "runtime parameter for tool Query Tabular", |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
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52 "name": "add_to_database" |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
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53 } |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
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54 ], |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
55 "label": null, |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
56 "name": "Query Tabular", |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
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57 "outputs": [ |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
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58 { |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
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59 "name": "sqlitedb", |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
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60 "type": "sqlite" |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
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61 }, |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
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62 { |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
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63 "name": "output", |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
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64 "type": "tabular" |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
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65 } |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
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66 ], |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
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67 "position": { |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
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68 "left": 432, |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
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69 "top": 203 |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
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70 }, |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
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71 "post_job_actions": { |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
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72 "HideDatasetActionsqlitedb": { |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
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73 "action_arguments": {}, |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
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74 "action_type": "HideDatasetAction", |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
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75 "output_name": "sqlitedb" |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
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76 } |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
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77 }, |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
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78 "tool_errors": null, |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
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changeset
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79 "tool_id": "toolshed.g2.bx.psu.edu/repos/jjohnson/query_tabular/query_tabular/2.0.0", |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
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80 "tool_shed_repository": { |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
81 "changeset_revision": "ae27dab228b8", |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
82 "name": "query_tabular", |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
83 "owner": "jjohnson", |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
84 "tool_shed": "toolshed.g2.bx.psu.edu" |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
85 }, |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
86 "tool_state": "{\"tables\": \"[{\\\"tbl_opts\\\": {\\\"load_named_columns\\\": \\\"true\\\", \\\"pkey_autoincr\\\": \\\"\\\", \\\"table_name\\\": \\\"psm\\\", \\\"col_names\\\": \\\"id,,sequence,,,,,,,,,,,,,,,,,,,,confidence,validation\\\", \\\"indexes\\\": []}, \\\"__index__\\\": 0, \\\"input_opts\\\": {\\\"linefilters\\\": [{\\\"filter\\\": {\\\"regex_action\\\": \\\"include_match\\\", \\\"regex_pattern\\\": \\\"^\\\\\\\\d\\\", \\\"__current_case__\\\": 2, \\\"filter_type\\\": \\\"regex\\\"}, \\\"__index__\\\": 0}]}, \\\"table\\\": {\\\"__class__\\\": \\\"RuntimeValue\\\"}}]\", \"save_db\": \"\\\"true\\\"\", \"__page__\": 0, \"__rerun_remap_job_id__\": null, \"no_header\": \"\\\"true\\\"\", \"sqlquery\": \"\\\"SELECT distinct sequence \\\\nFROM psm \\\\nWHERE validation IS NOT 'Confident' AND confidence >= 95 \\\\nORDER BY sequence\\\"\", \"add_to_database\": \"{\\\"withdb\\\": {\\\"__class__\\\": \\\"RuntimeValue\\\"}}\", \"workdb\": \"\\\"workdb.sqlite\\\"\"}", |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
87 "tool_version": "2.0.0", |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
88 "type": "tool", |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
89 "uuid": "a8789ea6-f25f-4f27-b687-351356e81967", |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
90 "workflow_outputs": [ |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
91 { |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
92 "label": null, |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
93 "output_name": "output", |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
94 "uuid": "e27b945e-e194-469e-a99c-c9db87476262" |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
95 } |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
96 ] |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
97 }, |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
98 "2": { |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
99 "annotation": "", |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
100 "content_id": "toolshed.g2.bx.psu.edu/repos/galaxyp/unipept/unipept/2.0.1", |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
101 "id": 2, |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
102 "input_connections": { |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
103 "peptide_src|input_tsv": { |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
104 "id": 1, |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
105 "output_name": "output" |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
106 } |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
107 }, |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
108 "inputs": [ |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
109 { |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
110 "description": "runtime parameter for tool Unipept", |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
111 "name": "peptide_src" |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
112 } |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
113 ], |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
114 "label": null, |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
115 "name": "Unipept", |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
116 "outputs": [ |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
117 { |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
118 "name": "output_json", |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
119 "type": "d3_hierarchy" |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
120 }, |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
121 { |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
122 "name": "output_tsv", |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
123 "type": "tabular" |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
124 }, |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
125 { |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
126 "name": "output_csv", |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
127 "type": "csv" |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
128 }, |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
129 { |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
130 "name": "output_unmatched", |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
131 "type": "tabular" |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
132 } |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
133 ], |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
134 "position": { |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
135 "left": 738.5, |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
136 "top": 200.5 |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
137 }, |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
138 "post_job_actions": { |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
139 "HideDatasetActionoutput_csv": { |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
140 "action_arguments": {}, |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
141 "action_type": "HideDatasetAction", |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
142 "output_name": "output_csv" |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
143 }, |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
144 "HideDatasetActionoutput_json": { |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
145 "action_arguments": {}, |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
146 "action_type": "HideDatasetAction", |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
147 "output_name": "output_json" |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
148 }, |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
149 "HideDatasetActionoutput_unmatched": { |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
150 "action_arguments": {}, |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
151 "action_type": "HideDatasetAction", |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
152 "output_name": "output_unmatched" |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
153 } |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
154 }, |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
155 "tool_errors": null, |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
156 "tool_id": "toolshed.g2.bx.psu.edu/repos/galaxyp/unipept/unipept/2.0.1", |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
157 "tool_shed_repository": { |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
158 "changeset_revision": "34758ab8aaa4", |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
159 "name": "unipept", |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
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|
160 "owner": "galaxyp", |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
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|
161 "tool_shed": "toolshed.g2.bx.psu.edu" |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
162 }, |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
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diff
changeset
|
163 "tool_state": "{\"__page__\": 0, \"outputs\": \"[\\\"tsv\\\"]\", \"__rerun_remap_job_id__\": null, \"peptide_src\": \"{\\\"column\\\": \\\"1\\\", \\\"fmt\\\": \\\"tabular\\\", \\\"input_tsv\\\": {\\\"__class__\\\": \\\"RuntimeValue\\\"}, \\\"__current_case__\\\": 1}\", \"strict\": \"\\\"false\\\"\", \"unipept\": \"{\\\"api\\\": \\\"pept2prot\\\", \\\"equate_il\\\": \\\"true\\\", \\\"__current_case__\\\": 2, \\\"extra\\\": \\\"true\\\"}\"}", |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
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diff
changeset
|
164 "tool_version": "2.0.1", |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
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|
165 "type": "tool", |
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planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
166 "uuid": "cf10a931-a775-441b-a8d7-6e03e45fa9db", |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
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diff
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|
167 "workflow_outputs": [ |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
168 { |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
169 "label": null, |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
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diff
changeset
|
170 "output_name": "output_tsv", |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
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diff
changeset
|
171 "uuid": "243231a1-d987-4331-ad40-d5f6c92bc828" |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
172 } |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
173 ] |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
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diff
changeset
|
174 }, |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
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diff
changeset
|
175 "3": { |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
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|
176 "annotation": "", |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
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|
177 "content_id": "toolshed.g2.bx.psu.edu/repos/jjohnson/split_tabular_columns/split_tabular_columns/0.0.1", |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
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|
178 "id": 3, |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
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|
179 "input_connections": { |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
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|
180 "input": { |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
181 "id": 2, |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
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diff
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|
182 "output_name": "output_tsv" |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
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diff
changeset
|
183 } |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
184 }, |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
185 "inputs": [ |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
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diff
changeset
|
186 { |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
187 "description": "runtime parameter for tool Split Tabular Columns", |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
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|
188 "name": "input" |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
189 } |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
190 ], |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
191 "label": null, |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
192 "name": "Split Tabular Columns", |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
193 "outputs": [ |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
194 { |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
195 "name": "output", |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
196 "type": "tabular" |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
197 } |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
198 ], |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
199 "position": { |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
200 "left": 1051, |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
201 "top": 200.5 |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
202 }, |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
203 "post_job_actions": {}, |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
204 "tool_errors": null, |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
205 "tool_id": "toolshed.g2.bx.psu.edu/repos/jjohnson/split_tabular_columns/split_tabular_columns/0.0.1", |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
206 "tool_shed_repository": { |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
207 "changeset_revision": "d43312f961cc", |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
208 "name": "split_tabular_columns", |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
209 "owner": "jjohnson", |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
210 "tool_shed": "toolshed.g2.bx.psu.edu" |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
211 }, |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
212 "tool_state": "{\"split_on\": \"\\\" \\\"\", \"input\": \"{\\\"__class__\\\": \\\"RuntimeValue\\\"}\", \"__rerun_remap_job_id__\": null, \"columns\": \"[\\\"6\\\"]\", \"__page__\": 0}", |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
213 "tool_version": "0.0.1", |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
214 "type": "tool", |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
215 "uuid": "d1e9833a-dfd7-4ef3-8db6-6ec99453bac7", |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
216 "workflow_outputs": [ |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
217 { |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
218 "label": null, |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
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|
219 "output_name": "output", |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
220 "uuid": "13e7e5dd-05b9-4df7-bc0e-43c7f1e60d26" |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
221 } |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
222 ] |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
223 } |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
224 }, |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
225 "uuid": "32e221b0-193d-4a31-87b4-940b6e1771fe" |
eb71034189fb
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/abrf2017_workshop commit bfcee2067ac57cc7136bb6a4281b1748a36776d5
galaxyp
parents:
diff
changeset
|
226 } |