Mercurial > repos > galaxyp > apostl
annotate Galaxy-Workflow-APOSTL_Workflow.ga @ 0:0b6e9cc279fc draft default tip
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
author | galaxyp |
---|---|
date | Thu, 11 May 2017 14:52:17 -0400 |
parents | |
children |
rev | line source |
---|---|
0
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1 { |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
2 "a_galaxy_workflow": "true", |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
3 "annotation": "", |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
4 "format-version": "0.1", |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
5 "name": "APOSTL Workflow", |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
6 "steps": { |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
7 "0": { |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
8 "annotation": "", |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
9 "content_id": "toolshed.g2.bx.psu.edu/repos/galaxyp/dbbuilder/dbbuilder/0.2.1", |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
10 "id": 0, |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
11 "input_connections": {}, |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
12 "inputs": [], |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
13 "label": null, |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
14 "name": "Protein Database Downloader", |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
15 "outputs": [ |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
16 { |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
17 "name": "output_database", |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
18 "type": "fasta" |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
19 } |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
20 ], |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
21 "position": { |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
22 "left": 119, |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
23 "top": 428 |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
24 }, |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
25 "post_job_actions": { |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
26 "HideDatasetActionoutput_database": { |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
27 "action_arguments": {}, |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
28 "action_type": "HideDatasetAction", |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
29 "output_name": "output_database" |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
30 }, |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
31 "RenameDatasetActionoutput_database": { |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
32 "action_arguments": { |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
33 "newname": "Human SwissProt dB April 12, 2017" |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
34 }, |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
35 "action_type": "RenameDatasetAction", |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
36 "output_name": "output_database" |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
37 } |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
38 }, |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
39 "tool_errors": null, |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
40 "tool_id": "toolshed.g2.bx.psu.edu/repos/galaxyp/dbbuilder/dbbuilder/0.2.1", |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
41 "tool_shed_repository": { |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
42 "changeset_revision": "19ee2e85931a", |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
43 "name": "dbbuilder", |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
44 "owner": "galaxyp", |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
45 "tool_shed": "toolshed.g2.bx.psu.edu" |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
46 }, |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
47 "tool_state": "{\"source\": \"{\\\"url\\\": \\\"https://raw.githubusercontent.com/pravs3683/databases/master/uniprot_swissprot_12April2017.fasta\\\", \\\"from\\\": \\\"url\\\", \\\"__current_case__\\\": 2}\", \"__rerun_remap_job_id__\": null, \"__page__\": 0}", |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
48 "tool_version": "0.2.1", |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
49 "type": "tool", |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
50 "uuid": "799e95bc-23e4-4c7b-b182-83c321892d42", |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
51 "workflow_outputs": [] |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
52 }, |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
53 "1": { |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
54 "annotation": "", |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
55 "content_id": "toolshed.g2.bx.psu.edu/repos/galaxyp/dbbuilder/dbbuilder/0.2.1", |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
56 "id": 1, |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
57 "input_connections": {}, |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
58 "inputs": [], |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
59 "label": null, |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
60 "name": "Protein Database Downloader", |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
61 "outputs": [ |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
62 { |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
63 "name": "output_database", |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
64 "type": "fasta" |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
65 } |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
66 ], |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
67 "position": { |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
68 "left": 124, |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
69 "top": 532 |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
70 }, |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
71 "post_job_actions": { |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
72 "RenameDatasetActionoutput_database": { |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
73 "action_arguments": { |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
74 "newname": "cRAP dB (common Repository of Adventitious Proteins database)" |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
75 }, |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
76 "action_type": "RenameDatasetAction", |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
77 "output_name": "output_database" |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
78 } |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
79 }, |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
80 "tool_errors": null, |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
81 "tool_id": "toolshed.g2.bx.psu.edu/repos/galaxyp/dbbuilder/dbbuilder/0.2.1", |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
82 "tool_shed_repository": { |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
83 "changeset_revision": "19ee2e85931a", |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
84 "name": "dbbuilder", |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
85 "owner": "galaxyp", |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
86 "tool_shed": "toolshed.g2.bx.psu.edu" |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
87 }, |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
88 "tool_state": "{\"source\": \"{\\\"from\\\": \\\"cRAP\\\", \\\"__current_case__\\\": 1}\", \"__rerun_remap_job_id__\": null, \"__page__\": 0}", |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
89 "tool_version": "0.2.1", |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
90 "type": "tool", |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
91 "uuid": "2f17233d-f5aa-4f18-85ed-d6568fafb0e5", |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
92 "workflow_outputs": [] |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
93 }, |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
94 "2": { |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
95 "annotation": "", |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
96 "content_id": null, |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
97 "id": 2, |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
98 "input_connections": {}, |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
99 "inputs": [ |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
100 { |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
101 "description": "", |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
102 "name": "04112012_JL_HCC827_EGFR_TAP_1_run1.MGF" |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
103 } |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
104 ], |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
105 "label": null, |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
106 "name": "Input dataset", |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
107 "outputs": [], |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
108 "position": { |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
109 "left": 179, |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
110 "top": 653.5 |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
111 }, |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
112 "tool_errors": null, |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
113 "tool_id": null, |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
114 "tool_state": "{\"name\": \"04112012_JL_HCC827_EGFR_TAP_1_run1.MGF\"}", |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
115 "tool_version": null, |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
116 "type": "data_input", |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
117 "uuid": "a13b4ae7-cc8a-4d7a-9a97-3186076a7447", |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
118 "workflow_outputs": [ |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
119 { |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
120 "label": null, |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
121 "output_name": "output", |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
122 "uuid": "66b3639f-eba8-4c7a-9835-2819252a29dd" |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
123 } |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
124 ] |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
125 }, |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
126 "3": { |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
127 "annotation": "", |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
128 "content_id": null, |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
129 "id": 3, |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
130 "input_connections": {}, |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
131 "inputs": [ |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
132 { |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
133 "description": "", |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
134 "name": "04112012_JL_HCC827_EGFR_TAP_2_run1.MGF" |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
135 } |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
136 ], |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
137 "label": null, |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
138 "name": "Input dataset", |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
139 "outputs": [], |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
140 "position": { |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
141 "left": 187, |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
142 "top": 813.5 |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
143 }, |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
144 "tool_errors": null, |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
145 "tool_id": null, |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
146 "tool_state": "{\"name\": \"04112012_JL_HCC827_EGFR_TAP_2_run1.MGF\"}", |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
147 "tool_version": null, |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
148 "type": "data_input", |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
149 "uuid": "f47afc6b-3c68-46d2-a12b-5797abeb2301", |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
150 "workflow_outputs": [ |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
151 { |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
152 "label": null, |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
153 "output_name": "output", |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
154 "uuid": "31877ead-047e-4b8d-8075-4855d2c04aa3" |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
155 } |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
156 ] |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
157 }, |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
158 "4": { |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
159 "annotation": "", |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
160 "content_id": null, |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
161 "id": 4, |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
162 "input_connections": {}, |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
163 "inputs": [ |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
164 { |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
165 "description": "", |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
166 "name": "04112012_JL_HCC827_GFP_TAP_1_run1.MGF" |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
167 } |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
168 ], |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
169 "label": null, |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
170 "name": "Input dataset", |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
171 "outputs": [], |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
172 "position": { |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
173 "left": 192, |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
174 "top": 975.5 |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
175 }, |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
176 "tool_errors": null, |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
177 "tool_id": null, |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
178 "tool_state": "{\"name\": \"04112012_JL_HCC827_GFP_TAP_1_run1.MGF\"}", |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
179 "tool_version": null, |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
180 "type": "data_input", |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
181 "uuid": "7d1127e1-b214-4e82-9512-f64eecde737e", |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
182 "workflow_outputs": [ |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
183 { |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
184 "label": null, |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
185 "output_name": "output", |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
186 "uuid": "ebb996dc-618a-4171-93a7-01e1f1ea6733" |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
187 } |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
188 ] |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
189 }, |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
190 "5": { |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
191 "annotation": "", |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
192 "content_id": null, |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
193 "id": 5, |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
194 "input_connections": {}, |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
195 "inputs": [ |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
196 { |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
197 "description": "", |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
198 "name": "04112012_JL_HCC827_GFP_TAP_2_run1.MGF" |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
199 } |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
200 ], |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
201 "label": null, |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
202 "name": "Input dataset", |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
203 "outputs": [], |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
204 "position": { |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
205 "left": 201, |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
206 "top": 1158.5 |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
207 }, |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
208 "tool_errors": null, |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
209 "tool_id": null, |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
210 "tool_state": "{\"name\": \"04112012_JL_HCC827_GFP_TAP_2_run1.MGF\"}", |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
211 "tool_version": null, |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
212 "type": "data_input", |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
213 "uuid": "c20424e0-300b-49cf-952f-0d44ec3f7b0e", |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
214 "workflow_outputs": [ |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
215 { |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
216 "label": null, |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
217 "output_name": "output", |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
218 "uuid": "a287a9cf-dbb7-4958-b834-0f4ba4d455e1" |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
219 } |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
220 ] |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
221 }, |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
222 "6": { |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
223 "annotation": "", |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
224 "content_id": null, |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
225 "id": 6, |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
226 "input_connections": {}, |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
227 "inputs": [ |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
228 { |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
229 "description": "", |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
230 "name": "Bait File (bait.txt)" |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
231 } |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
232 ], |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
233 "label": null, |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
234 "name": "Input dataset", |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
235 "outputs": [], |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
236 "position": { |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
237 "left": 1357, |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
238 "top": 272.5 |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
239 }, |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
240 "tool_errors": null, |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
241 "tool_id": null, |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
242 "tool_state": "{\"name\": \"Bait File (bait.txt)\"}", |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
243 "tool_version": null, |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
244 "type": "data_input", |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
245 "uuid": "ef95a348-a99b-4a24-a760-8896f74d2430", |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
246 "workflow_outputs": [ |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
247 { |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
248 "label": null, |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
249 "output_name": "output", |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
250 "uuid": "bb47856c-4c16-410e-a666-3e8ca7845f96" |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
251 } |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
252 ] |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
253 }, |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
254 "7": { |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
255 "annotation": "", |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
256 "content_id": "toolshed.g2.bx.psu.edu/repos/galaxyp/fasta_merge_files_and_filter_unique_sequences/fasta_merge_files_and_filter_unique_sequences/1.0", |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
257 "id": 7, |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
258 "input_connections": { |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
259 "inputs_0|input": { |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
260 "id": 0, |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
261 "output_name": "output_database" |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
262 }, |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
263 "inputs_1|input": { |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
264 "id": 1, |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
265 "output_name": "output_database" |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
266 } |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
267 }, |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
268 "inputs": [], |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
269 "label": null, |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
270 "name": "FASTA Merge Files and Filter Unique Sequences", |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
271 "outputs": [ |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
272 { |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
273 "name": "output", |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
274 "type": "fasta" |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
275 } |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
276 ], |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
277 "position": { |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
278 "left": 530, |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
279 "top": 434 |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
280 }, |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
281 "post_job_actions": { |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
282 "HideDatasetActionoutput": { |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
283 "action_arguments": {}, |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
284 "action_type": "HideDatasetAction", |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
285 "output_name": "output" |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
286 } |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
287 }, |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
288 "tool_errors": null, |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
289 "tool_id": "toolshed.g2.bx.psu.edu/repos/galaxyp/fasta_merge_files_and_filter_unique_sequences/fasta_merge_files_and_filter_unique_sequences/1.0", |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
290 "tool_shed_repository": { |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
291 "changeset_revision": "2904d46167da", |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
292 "name": "fasta_merge_files_and_filter_unique_sequences", |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
293 "owner": "galaxyp", |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
294 "tool_shed": "toolshed.g2.bx.psu.edu" |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
295 }, |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
296 "tool_state": "{\"inputs\": \"[{\\\"__index__\\\": 0, \\\"input\\\": {\\\"__class__\\\": \\\"RuntimeValue\\\"}}, {\\\"__index__\\\": 1, \\\"input\\\": {\\\"__class__\\\": \\\"RuntimeValue\\\"}}]\", \"__rerun_remap_job_id__\": null, \"__page__\": 0}", |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
297 "tool_version": "1.0", |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
298 "type": "tool", |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
299 "uuid": "51cd4b88-e1a1-4508-8379-45a60e22b407", |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
300 "workflow_outputs": [] |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
301 }, |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
302 "8": { |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
303 "annotation": "", |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
304 "content_id": "toolshed.g2.bx.psu.edu/repos/galaxyp/peptideshaker/search_gui/3.2.11", |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
305 "id": 8, |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
306 "input_connections": { |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
307 "input_database": { |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
308 "id": 7, |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
309 "output_name": "output" |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
310 }, |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
311 "peak_lists": { |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
312 "id": 2, |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
313 "output_name": "output" |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
314 } |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
315 }, |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
316 "inputs": [ |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
317 { |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
318 "description": "runtime parameter for tool Search GUI", |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
319 "name": "peak_lists" |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
320 }, |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
321 { |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
322 "description": "runtime parameter for tool Search GUI", |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
323 "name": "input_database" |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
324 } |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
325 ], |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
326 "label": null, |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
327 "name": "Search GUI", |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
328 "outputs": [ |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
329 { |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
330 "name": "searchgui_results", |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
331 "type": "searchgui_archive" |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
332 } |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
333 ], |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
334 "position": { |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
335 "left": 560, |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
336 "top": 617 |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
337 }, |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
338 "post_job_actions": { |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
339 "RenameDatasetActionsearchgui_results": { |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
340 "action_arguments": { |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
341 "newname": "04112012_JL_HCC827_EGFR_TAP_1_run1 (SearchGUI)" |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
342 }, |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
343 "action_type": "RenameDatasetAction", |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
344 "output_name": "searchgui_results" |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
345 } |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
346 }, |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
347 "tool_errors": null, |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
348 "tool_id": "toolshed.g2.bx.psu.edu/repos/galaxyp/peptideshaker/search_gui/3.2.11", |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
349 "tool_shed_repository": { |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
350 "changeset_revision": "7f2aeb19650f", |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
351 "name": "peptideshaker", |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
352 "owner": "galaxyp", |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
353 "tool_shed": "toolshed.g2.bx.psu.edu" |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
354 }, |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
355 "tool_state": "{\"__page__\": 0, \"peak_lists\": \"{\\\"__class__\\\": \\\"RuntimeValue\\\"}\", \"protein_database_options\": \"{\\\"update_gene_mapping\\\": \\\"false\\\", \\\"use_gene_mapping\\\": \\\"false\\\", \\\"create_decoy\\\": \\\"true\\\"}\", \"protein_digest_options\": \"{\\\"digestion\\\": {\\\"cleavage\\\": \\\"default\\\", \\\"missed_cleavages\\\": \\\"2\\\", \\\"__current_case__\\\": 0}}\", \"__rerun_remap_job_id__\": null, \"search_engines_options\": \"{\\\"engines\\\": [\\\"X!Tandem\\\", \\\"MSGF\\\", \\\"OMSSA\\\"]}\", \"precursor_options\": \"{\\\"forward_ion\\\": \\\"b\\\", \\\"max_charge\\\": \\\"6\\\", \\\"max_isotope\\\": \\\"1\\\", \\\"precursor_ion_tol_units\\\": \\\"1\\\", \\\"min_isotope\\\": \\\"0\\\", \\\"fragment_tol\\\": \\\"0.5\\\", \\\"min_charge\\\": \\\"2\\\", \\\"reverse_ion\\\": \\\"y\\\", \\\"precursor_ion_tol\\\": \\\"10.0\\\"}\", \"advanced_options\": \"{\\\"searchgui_advanced\\\": {\\\"searchgui_advanced_selector\\\": \\\"basic\\\", \\\"__current_case__\\\": 0}, \\\"xtandem\\\": {\\\"xtandem_quick_acetyl\\\": \\\"false\\\", \\\"xtandem_min_peaks\\\": \\\"15\\\", \\\"xtandem_quick_pyro\\\": \\\"false\\\", \\\"xtandem_stp_bias\\\": \\\"false\\\", \\\"xtandem_advanced\\\": \\\"yes\\\", \\\"xtandem_dynamic_range\\\": \\\"100\\\", \\\"xtandem_min_prec_mass\\\": \\\"200\\\", \\\"xtandem_output_sequences\\\": \\\"false\\\", \\\"__current_case__\\\": 1, \\\"xtandem_output_proteins\\\": \\\"false\\\", \\\"xtandem_output_spectra\\\": \\\"true\\\", \\\"xtandem_npeaks\\\": \\\"50\\\", \\\"xtandem_noise_suppr\\\": \\\"true\\\", \\\"xtandem_min_frag_mz\\\": \\\"200\\\", \\\"xtandem_evalue\\\": \\\"100.0\\\", \\\"xtandem_refine\\\": {\\\"xtandem_refine_selector\\\": \\\"no\\\", \\\"__current_case__\\\": 0}}, \\\"msgf\\\": {\\\"msgf_advanced\\\": \\\"no\\\", \\\"__current_case__\\\": 0}, \\\"directtag\\\": {\\\"directtag_advanced\\\": \\\"no\\\", \\\"__current_case__\\\": 0}, \\\"comet\\\": {\\\"comet_advanced\\\": \\\"no\\\", \\\"__current_case__\\\": 0}, \\\"omssa\\\": {\\\"omssa_advanced\\\": \\\"no\\\", \\\"__current_case__\\\": 0}, \\\"novor\\\": {\\\"novor_advanced\\\": \\\"no\\\", \\\"__current_case__\\\": 0}}\", \"input_database\": \"{\\\"__class__\\\": \\\"RuntimeValue\\\"}\", \"protein_modification_options\": \"{\\\"variable_modifications\\\": [\\\"Acetylation of protein N-term\\\", \\\"Oxidation of M\\\"], \\\"fixed_modifications\\\": [\\\"Carbamidomethylation of C\\\"]}\"}", |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
356 "tool_version": "3.2.11", |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
357 "type": "tool", |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
358 "uuid": "d8caa9eb-db82-4010-af2b-051332a0a685", |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
359 "workflow_outputs": [ |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
360 { |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
361 "label": null, |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
362 "output_name": "searchgui_results", |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
363 "uuid": "d60f276c-405e-4153-b582-4548d8362629" |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
364 } |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
365 ] |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
366 }, |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
367 "9": { |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
368 "annotation": "", |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
369 "content_id": "toolshed.g2.bx.psu.edu/repos/galaxyp/peptideshaker/search_gui/3.2.11", |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
370 "id": 9, |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
371 "input_connections": { |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
372 "input_database": { |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
373 "id": 7, |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
374 "output_name": "output" |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
375 }, |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
376 "peak_lists": { |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
377 "id": 3, |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
378 "output_name": "output" |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
379 } |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
380 }, |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
381 "inputs": [ |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
382 { |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
383 "description": "runtime parameter for tool Search GUI", |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
384 "name": "peak_lists" |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
385 }, |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
386 { |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
387 "description": "runtime parameter for tool Search GUI", |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
388 "name": "input_database" |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
389 } |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
390 ], |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
391 "label": null, |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
392 "name": "Search GUI", |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
393 "outputs": [ |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
394 { |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
395 "name": "searchgui_results", |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
396 "type": "searchgui_archive" |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
397 } |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
398 ], |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
399 "position": { |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
400 "left": 570, |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
401 "top": 781 |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
402 }, |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
403 "post_job_actions": { |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
404 "RenameDatasetActionsearchgui_results": { |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
405 "action_arguments": { |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
406 "newname": "04112012_JL_HCC827_EGFR_TAP_2_run1 (SearchGUI Results)" |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
407 }, |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
408 "action_type": "RenameDatasetAction", |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
409 "output_name": "searchgui_results" |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
410 } |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
411 }, |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
412 "tool_errors": null, |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
413 "tool_id": "toolshed.g2.bx.psu.edu/repos/galaxyp/peptideshaker/search_gui/3.2.11", |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
414 "tool_shed_repository": { |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
415 "changeset_revision": "7f2aeb19650f", |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
416 "name": "peptideshaker", |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
417 "owner": "galaxyp", |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
418 "tool_shed": "toolshed.g2.bx.psu.edu" |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
419 }, |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
420 "tool_state": "{\"__page__\": 0, \"peak_lists\": \"{\\\"__class__\\\": \\\"RuntimeValue\\\"}\", \"protein_database_options\": \"{\\\"update_gene_mapping\\\": \\\"false\\\", \\\"use_gene_mapping\\\": \\\"false\\\", \\\"create_decoy\\\": \\\"true\\\"}\", \"protein_digest_options\": \"{\\\"digestion\\\": {\\\"cleavage\\\": \\\"default\\\", \\\"missed_cleavages\\\": \\\"2\\\", \\\"__current_case__\\\": 0}}\", \"__rerun_remap_job_id__\": null, \"search_engines_options\": \"{\\\"engines\\\": [\\\"X!Tandem\\\", \\\"MSGF\\\", \\\"OMSSA\\\"]}\", \"precursor_options\": \"{\\\"forward_ion\\\": \\\"b\\\", \\\"max_charge\\\": \\\"6\\\", \\\"max_isotope\\\": \\\"1\\\", \\\"precursor_ion_tol_units\\\": \\\"1\\\", \\\"min_isotope\\\": \\\"0\\\", \\\"fragment_tol\\\": \\\"0.5\\\", \\\"min_charge\\\": \\\"2\\\", \\\"reverse_ion\\\": \\\"y\\\", \\\"precursor_ion_tol\\\": \\\"10.0\\\"}\", \"advanced_options\": \"{\\\"searchgui_advanced\\\": {\\\"searchgui_advanced_selector\\\": \\\"basic\\\", \\\"__current_case__\\\": 0}, \\\"xtandem\\\": {\\\"xtandem_quick_acetyl\\\": \\\"false\\\", \\\"xtandem_min_peaks\\\": \\\"15\\\", \\\"xtandem_quick_pyro\\\": \\\"false\\\", \\\"xtandem_stp_bias\\\": \\\"false\\\", \\\"xtandem_advanced\\\": \\\"yes\\\", \\\"xtandem_dynamic_range\\\": \\\"100\\\", \\\"xtandem_min_prec_mass\\\": \\\"200\\\", \\\"xtandem_output_sequences\\\": \\\"false\\\", \\\"__current_case__\\\": 1, \\\"xtandem_output_proteins\\\": \\\"false\\\", \\\"xtandem_output_spectra\\\": \\\"true\\\", \\\"xtandem_npeaks\\\": \\\"50\\\", \\\"xtandem_noise_suppr\\\": \\\"true\\\", \\\"xtandem_min_frag_mz\\\": \\\"200\\\", \\\"xtandem_evalue\\\": \\\"100.0\\\", \\\"xtandem_refine\\\": {\\\"xtandem_refine_selector\\\": \\\"no\\\", \\\"__current_case__\\\": 0}}, \\\"msgf\\\": {\\\"msgf_advanced\\\": \\\"no\\\", \\\"__current_case__\\\": 0}, \\\"directtag\\\": {\\\"directtag_advanced\\\": \\\"no\\\", \\\"__current_case__\\\": 0}, \\\"comet\\\": {\\\"comet_advanced\\\": \\\"no\\\", \\\"__current_case__\\\": 0}, \\\"omssa\\\": {\\\"omssa_advanced\\\": \\\"no\\\", \\\"__current_case__\\\": 0}, \\\"novor\\\": {\\\"novor_advanced\\\": \\\"no\\\", \\\"__current_case__\\\": 0}}\", \"input_database\": \"{\\\"__class__\\\": \\\"RuntimeValue\\\"}\", \"protein_modification_options\": \"{\\\"variable_modifications\\\": [\\\"Acetylation of protein N-term\\\", \\\"Oxidation of M\\\"], \\\"fixed_modifications\\\": [\\\"Carbamidomethylation of C\\\"]}\"}", |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
421 "tool_version": "3.2.11", |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
422 "type": "tool", |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
423 "uuid": "7c36f1c8-09db-46e5-beae-28fc17b82f4e", |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
424 "workflow_outputs": [ |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
425 { |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
426 "label": null, |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
427 "output_name": "searchgui_results", |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
428 "uuid": "59c10d40-c56e-48a8-a65f-2a57a52f3d2d" |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
429 } |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
430 ] |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
431 }, |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
432 "10": { |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
433 "annotation": "", |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
434 "content_id": "toolshed.g2.bx.psu.edu/repos/galaxyp/peptideshaker/search_gui/3.2.11", |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
435 "id": 10, |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
436 "input_connections": { |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
437 "input_database": { |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
438 "id": 7, |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
439 "output_name": "output" |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
440 }, |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
441 "peak_lists": { |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
442 "id": 4, |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
443 "output_name": "output" |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
444 } |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
445 }, |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
446 "inputs": [ |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
447 { |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
448 "description": "runtime parameter for tool Search GUI", |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
449 "name": "peak_lists" |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
450 }, |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
451 { |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
452 "description": "runtime parameter for tool Search GUI", |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
453 "name": "input_database" |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
454 } |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
455 ], |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
456 "label": null, |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
457 "name": "Search GUI", |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
458 "outputs": [ |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
459 { |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
460 "name": "searchgui_results", |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
461 "type": "searchgui_archive" |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
462 } |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
463 ], |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
464 "position": { |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
465 "left": 577, |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
466 "top": 954 |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
467 }, |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
468 "post_job_actions": { |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
469 "RenameDatasetActionsearchgui_results": { |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
470 "action_arguments": { |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
471 "newname": "04112012_JL_HCC827_GFP_TAP_1_run1 (SearchGUI Results)" |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
472 }, |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
473 "action_type": "RenameDatasetAction", |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
474 "output_name": "searchgui_results" |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
475 } |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
476 }, |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
477 "tool_errors": null, |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
478 "tool_id": "toolshed.g2.bx.psu.edu/repos/galaxyp/peptideshaker/search_gui/3.2.11", |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
479 "tool_shed_repository": { |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
480 "changeset_revision": "7f2aeb19650f", |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
481 "name": "peptideshaker", |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
482 "owner": "galaxyp", |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
483 "tool_shed": "toolshed.g2.bx.psu.edu" |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
484 }, |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
485 "tool_state": "{\"__page__\": 0, \"peak_lists\": \"{\\\"__class__\\\": \\\"RuntimeValue\\\"}\", \"protein_database_options\": \"{\\\"update_gene_mapping\\\": \\\"false\\\", \\\"use_gene_mapping\\\": \\\"false\\\", \\\"create_decoy\\\": \\\"true\\\"}\", \"protein_digest_options\": \"{\\\"digestion\\\": {\\\"cleavage\\\": \\\"default\\\", \\\"missed_cleavages\\\": \\\"2\\\", \\\"__current_case__\\\": 0}}\", \"__rerun_remap_job_id__\": null, \"search_engines_options\": \"{\\\"engines\\\": [\\\"X!Tandem\\\", \\\"MSGF\\\", \\\"OMSSA\\\"]}\", \"precursor_options\": \"{\\\"forward_ion\\\": \\\"b\\\", \\\"max_charge\\\": \\\"6\\\", \\\"max_isotope\\\": \\\"1\\\", \\\"precursor_ion_tol_units\\\": \\\"1\\\", \\\"min_isotope\\\": \\\"0\\\", \\\"fragment_tol\\\": \\\"0.5\\\", \\\"min_charge\\\": \\\"2\\\", \\\"reverse_ion\\\": \\\"y\\\", \\\"precursor_ion_tol\\\": \\\"10.0\\\"}\", \"advanced_options\": \"{\\\"searchgui_advanced\\\": {\\\"searchgui_advanced_selector\\\": \\\"basic\\\", \\\"__current_case__\\\": 0}, \\\"xtandem\\\": {\\\"xtandem_quick_acetyl\\\": \\\"false\\\", \\\"xtandem_min_peaks\\\": \\\"15\\\", \\\"xtandem_quick_pyro\\\": \\\"false\\\", \\\"xtandem_stp_bias\\\": \\\"false\\\", \\\"xtandem_advanced\\\": \\\"yes\\\", \\\"xtandem_dynamic_range\\\": \\\"100\\\", \\\"xtandem_min_prec_mass\\\": \\\"200\\\", \\\"xtandem_output_sequences\\\": \\\"false\\\", \\\"__current_case__\\\": 1, \\\"xtandem_output_proteins\\\": \\\"false\\\", \\\"xtandem_output_spectra\\\": \\\"true\\\", \\\"xtandem_npeaks\\\": \\\"50\\\", \\\"xtandem_noise_suppr\\\": \\\"true\\\", \\\"xtandem_min_frag_mz\\\": \\\"200\\\", \\\"xtandem_evalue\\\": \\\"100.0\\\", \\\"xtandem_refine\\\": {\\\"xtandem_refine_selector\\\": \\\"no\\\", \\\"__current_case__\\\": 0}}, \\\"msgf\\\": {\\\"msgf_advanced\\\": \\\"no\\\", \\\"__current_case__\\\": 0}, \\\"directtag\\\": {\\\"directtag_advanced\\\": \\\"no\\\", \\\"__current_case__\\\": 0}, \\\"comet\\\": {\\\"comet_advanced\\\": \\\"no\\\", \\\"__current_case__\\\": 0}, \\\"omssa\\\": {\\\"omssa_advanced\\\": \\\"no\\\", \\\"__current_case__\\\": 0}, \\\"novor\\\": {\\\"novor_advanced\\\": \\\"no\\\", \\\"__current_case__\\\": 0}}\", \"input_database\": \"{\\\"__class__\\\": \\\"RuntimeValue\\\"}\", \"protein_modification_options\": \"{\\\"variable_modifications\\\": [\\\"Acetylation of protein N-term\\\", \\\"Oxidation of M\\\"], \\\"fixed_modifications\\\": [\\\"Carbamidomethylation of C\\\"]}\"}", |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
486 "tool_version": "3.2.11", |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
487 "type": "tool", |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
488 "uuid": "cf449d43-a257-4f63-8a52-cccee9f7aa9c", |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
489 "workflow_outputs": [ |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
490 { |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
491 "label": null, |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
492 "output_name": "searchgui_results", |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
493 "uuid": "f0b50cb3-9c6a-42f2-a2ef-8d4c0b2d427b" |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
494 } |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
495 ] |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
496 }, |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
497 "11": { |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
498 "annotation": "", |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
499 "content_id": "toolshed.g2.bx.psu.edu/repos/galaxyp/peptideshaker/search_gui/3.2.11", |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
500 "id": 11, |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
501 "input_connections": { |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
502 "input_database": { |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
503 "id": 7, |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
504 "output_name": "output" |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
505 }, |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
506 "peak_lists": { |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
507 "id": 5, |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
508 "output_name": "output" |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
509 } |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
510 }, |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
511 "inputs": [ |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
512 { |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
513 "description": "runtime parameter for tool Search GUI", |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
514 "name": "peak_lists" |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
515 }, |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
516 { |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
517 "description": "runtime parameter for tool Search GUI", |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
518 "name": "input_database" |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
519 } |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
520 ], |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
521 "label": null, |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
522 "name": "Search GUI", |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
523 "outputs": [ |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
524 { |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
525 "name": "searchgui_results", |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
526 "type": "searchgui_archive" |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
527 } |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
528 ], |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
529 "position": { |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
530 "left": 583, |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
531 "top": 1127 |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
532 }, |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
533 "post_job_actions": { |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
534 "RenameDatasetActionsearchgui_results": { |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
535 "action_arguments": { |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
536 "newname": "04112012_JL_HCC827_GFP_TAP_2_run1 (SearchGUI Results)" |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
537 }, |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
538 "action_type": "RenameDatasetAction", |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
539 "output_name": "searchgui_results" |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
540 } |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
541 }, |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
542 "tool_errors": null, |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
543 "tool_id": "toolshed.g2.bx.psu.edu/repos/galaxyp/peptideshaker/search_gui/3.2.11", |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
544 "tool_shed_repository": { |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
545 "changeset_revision": "7f2aeb19650f", |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
546 "name": "peptideshaker", |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
547 "owner": "galaxyp", |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
548 "tool_shed": "toolshed.g2.bx.psu.edu" |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
549 }, |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
550 "tool_state": "{\"__page__\": 0, \"peak_lists\": \"{\\\"__class__\\\": \\\"RuntimeValue\\\"}\", \"protein_database_options\": \"{\\\"update_gene_mapping\\\": \\\"false\\\", \\\"use_gene_mapping\\\": \\\"false\\\", \\\"create_decoy\\\": \\\"true\\\"}\", \"protein_digest_options\": \"{\\\"digestion\\\": {\\\"cleavage\\\": \\\"default\\\", \\\"missed_cleavages\\\": \\\"2\\\", \\\"__current_case__\\\": 0}}\", \"__rerun_remap_job_id__\": null, \"search_engines_options\": \"{\\\"engines\\\": [\\\"X!Tandem\\\", \\\"MSGF\\\", \\\"OMSSA\\\"]}\", \"precursor_options\": \"{\\\"forward_ion\\\": \\\"b\\\", \\\"max_charge\\\": \\\"6\\\", \\\"max_isotope\\\": \\\"1\\\", \\\"precursor_ion_tol_units\\\": \\\"1\\\", \\\"min_isotope\\\": \\\"0\\\", \\\"fragment_tol\\\": \\\"0.5\\\", \\\"min_charge\\\": \\\"2\\\", \\\"reverse_ion\\\": \\\"y\\\", \\\"precursor_ion_tol\\\": \\\"10.0\\\"}\", \"advanced_options\": \"{\\\"searchgui_advanced\\\": {\\\"searchgui_advanced_selector\\\": \\\"basic\\\", \\\"__current_case__\\\": 0}, \\\"xtandem\\\": {\\\"xtandem_quick_acetyl\\\": \\\"false\\\", \\\"xtandem_min_peaks\\\": \\\"15\\\", \\\"xtandem_quick_pyro\\\": \\\"false\\\", \\\"xtandem_stp_bias\\\": \\\"false\\\", \\\"xtandem_advanced\\\": \\\"yes\\\", \\\"xtandem_dynamic_range\\\": \\\"100\\\", \\\"xtandem_min_prec_mass\\\": \\\"200\\\", \\\"xtandem_output_sequences\\\": \\\"false\\\", \\\"__current_case__\\\": 1, \\\"xtandem_output_proteins\\\": \\\"false\\\", \\\"xtandem_output_spectra\\\": \\\"true\\\", \\\"xtandem_npeaks\\\": \\\"50\\\", \\\"xtandem_noise_suppr\\\": \\\"true\\\", \\\"xtandem_min_frag_mz\\\": \\\"200\\\", \\\"xtandem_evalue\\\": \\\"100.0\\\", \\\"xtandem_refine\\\": {\\\"xtandem_refine_selector\\\": \\\"no\\\", \\\"__current_case__\\\": 0}}, \\\"msgf\\\": {\\\"msgf_advanced\\\": \\\"no\\\", \\\"__current_case__\\\": 0}, \\\"directtag\\\": {\\\"directtag_advanced\\\": \\\"no\\\", \\\"__current_case__\\\": 0}, \\\"comet\\\": {\\\"comet_advanced\\\": \\\"no\\\", \\\"__current_case__\\\": 0}, \\\"omssa\\\": {\\\"omssa_advanced\\\": \\\"no\\\", \\\"__current_case__\\\": 0}, \\\"novor\\\": {\\\"novor_advanced\\\": \\\"no\\\", \\\"__current_case__\\\": 0}}\", \"input_database\": \"{\\\"__class__\\\": \\\"RuntimeValue\\\"}\", \"protein_modification_options\": \"{\\\"variable_modifications\\\": [\\\"Acetylation of protein N-term\\\", \\\"Oxidation of M\\\"], \\\"fixed_modifications\\\": [\\\"Carbamidomethylation of C\\\"]}\"}", |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
551 "tool_version": "3.2.11", |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
552 "type": "tool", |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
553 "uuid": "016a97dc-03c8-409d-8168-d13bd2923672", |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
554 "workflow_outputs": [ |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
555 { |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
556 "label": null, |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
557 "output_name": "searchgui_results", |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
558 "uuid": "38d8b5ae-bc12-4297-a3e4-0ada3dc20422" |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
559 } |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
560 ] |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
561 }, |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
562 "12": { |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
563 "annotation": "", |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
564 "content_id": "toolshed.g2.bx.psu.edu/repos/galaxyp/peptideshaker/peptide_shaker/1.16.3", |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
565 "id": 12, |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
566 "input_connections": { |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
567 "searchgui_input": { |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
568 "id": 8, |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
569 "output_name": "searchgui_results" |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
570 } |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
571 }, |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
572 "inputs": [ |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
573 { |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
574 "description": "runtime parameter for tool Peptide Shaker", |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
575 "name": "searchgui_input" |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
576 } |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
577 ], |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
578 "label": null, |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
579 "name": "Peptide Shaker", |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
580 "outputs": [ |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
581 { |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
582 "name": "mzidentML", |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
583 "type": "mzid" |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
584 }, |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
585 { |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
586 "name": "output_cps", |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
587 "type": "peptideshaker_archive" |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
588 }, |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
589 { |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
590 "name": "output_zip", |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
591 "type": "zip" |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
592 }, |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
593 { |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
594 "name": "output_certificate", |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
595 "type": "txt" |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
596 }, |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
597 { |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
598 "name": "output_hierarchical", |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
599 "type": "tabular" |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
600 }, |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
601 { |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
602 "name": "output_psm_phosphorylation", |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
603 "type": "tabular" |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
604 }, |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
605 { |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
606 "name": "output_psm", |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
607 "type": "tabular" |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
608 }, |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
609 { |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
610 "name": "output_extended_psm", |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
611 "type": "tabular" |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
612 }, |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
613 { |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
614 "name": "output_peptides_phosphorylation", |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
615 "type": "tabular" |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
616 }, |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
617 { |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
618 "name": "output_peptides", |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
619 "type": "tabular" |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
620 }, |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
621 { |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
622 "name": "output_proteins_phosphorylation", |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
623 "type": "tabular" |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
624 }, |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
625 { |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
626 "name": "output_proteins", |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
627 "type": "tabular" |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
628 } |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
629 ], |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
630 "position": { |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
631 "left": 1015, |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
632 "top": 187 |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
633 }, |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
634 "post_job_actions": { |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
635 "HideDatasetActionmzidentML": { |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
636 "action_arguments": {}, |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
637 "action_type": "HideDatasetAction", |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
638 "output_name": "mzidentML" |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
639 }, |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
640 "HideDatasetActionoutput_cps": { |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
641 "action_arguments": {}, |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
642 "action_type": "HideDatasetAction", |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
643 "output_name": "output_cps" |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
644 }, |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
645 "HideDatasetActionoutput_extended_psm": { |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
646 "action_arguments": {}, |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
647 "action_type": "HideDatasetAction", |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
648 "output_name": "output_extended_psm" |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
649 }, |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
650 "HideDatasetActionoutput_hierarchical": { |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
651 "action_arguments": {}, |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
652 "action_type": "HideDatasetAction", |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
653 "output_name": "output_hierarchical" |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
654 }, |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
655 "HideDatasetActionoutput_peptides": { |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
656 "action_arguments": {}, |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
657 "action_type": "HideDatasetAction", |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
658 "output_name": "output_peptides" |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
659 }, |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
660 "HideDatasetActionoutput_peptides_phosphorylation": { |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
661 "action_arguments": {}, |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
662 "action_type": "HideDatasetAction", |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
663 "output_name": "output_peptides_phosphorylation" |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
664 }, |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
665 "HideDatasetActionoutput_proteins_phosphorylation": { |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
666 "action_arguments": {}, |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
667 "action_type": "HideDatasetAction", |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
668 "output_name": "output_proteins_phosphorylation" |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
669 }, |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
670 "HideDatasetActionoutput_psm_phosphorylation": { |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
671 "action_arguments": {}, |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
672 "action_type": "HideDatasetAction", |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
673 "output_name": "output_psm_phosphorylation" |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
674 }, |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
675 "HideDatasetActionoutput_zip": { |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
676 "action_arguments": {}, |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
677 "action_type": "HideDatasetAction", |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
678 "output_name": "output_zip" |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
679 }, |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
680 "RenameDatasetActionoutput_certificate": { |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
681 "action_arguments": { |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
682 "newname": "PeptideShaker Summary Report: 04112012_JL_HCC827_EGFR_TAP_1_run1" |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
683 }, |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
684 "action_type": "RenameDatasetAction", |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
685 "output_name": "output_certificate" |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
686 }, |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
687 "RenameDatasetActionoutput_proteins": { |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
688 "action_arguments": { |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
689 "newname": "PeptideShaker Protein Report: 04112012_JL_HCC827_EGFR_TAP_1_run1" |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
690 }, |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
691 "action_type": "RenameDatasetAction", |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
692 "output_name": "output_proteins" |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
693 }, |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
694 "RenameDatasetActionoutput_psm": { |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
695 "action_arguments": { |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
696 "newname": "PeptideShaker PSM Report: 04112012_JL_HCC827_EGFR_TAP_1_run1" |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
697 }, |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
698 "action_type": "RenameDatasetAction", |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
699 "output_name": "output_psm" |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
700 } |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
701 }, |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
702 "tool_errors": null, |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
703 "tool_id": "toolshed.g2.bx.psu.edu/repos/galaxyp/peptideshaker/peptide_shaker/1.16.3", |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
704 "tool_shed_repository": { |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
705 "changeset_revision": "7f2aeb19650f", |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
706 "name": "peptideshaker", |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
707 "owner": "galaxyp", |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
708 "tool_shed": "toolshed.g2.bx.psu.edu" |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
709 }, |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
710 "tool_state": "{\"__page__\": 0, \"processing_options\": \"{\\\"peptide_fdr\\\": \\\"5.0\\\", \\\"protein_fdr\\\": \\\"5.0\\\", \\\"protein_fraction_mw_confidence\\\": \\\"95.0\\\", \\\"ptm_score\\\": {\\\"ptm_score_selector\\\": \\\"0\\\", \\\"__current_case__\\\": 0}, \\\"ptm_alignment\\\": \\\"true\\\", \\\"__current_case__\\\": 1, \\\"processing_options_selector\\\": \\\"yes\\\", \\\"psm_fdr\\\": \\\"5.0\\\"}\", \"__rerun_remap_job_id__\": null, \"filtering_options\": \"{\\\"max_precursor_error_type\\\": \\\"1\\\", \\\"filtering_options_selector\\\": \\\"yes\\\", \\\"__current_case__\\\": 1, \\\"max_precursor_error\\\": \\\"10.0\\\", \\\"exclude_unknown_ptms\\\": \\\"true\\\", \\\"max_peptide_length\\\": \\\"75\\\", \\\"min_peptide_length\\\": \\\"6\\\"}\", \"searchgui_input\": \"{\\\"__class__\\\": \\\"RuntimeValue\\\"}\", \"contact_options\": \"{\\\"contact_options_selector\\\": \\\"no\\\", \\\"__current_case__\\\": 0}\", \"outputs\": \"[\\\"3\\\", \\\"7\\\", \\\"0\\\"]\", \"include_sequences\": \"\\\"false\\\"\"}", |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
711 "tool_version": "1.16.3", |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
712 "type": "tool", |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
713 "uuid": "6b56c797-782d-4f2f-b145-d752755cef44", |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
714 "workflow_outputs": [ |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
715 { |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
716 "label": null, |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
717 "output_name": "output_proteins", |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
718 "uuid": "0978c289-4a5b-41fc-80b5-e23e9745e9a3" |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
719 }, |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
720 { |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
721 "label": null, |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
722 "output_name": "output_psm", |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
723 "uuid": "450b67c3-e6c6-4fd7-bc4b-272ef4b3e3a5" |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
724 }, |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
725 { |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
726 "label": null, |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
727 "output_name": "output_certificate", |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
728 "uuid": "98aa4a9c-3a06-4ddd-8fa4-3978102875ac" |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
729 } |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
730 ] |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
731 }, |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
732 "13": { |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
733 "annotation": "", |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
734 "content_id": "toolshed.g2.bx.psu.edu/repos/galaxyp/peptideshaker/peptide_shaker/1.16.3", |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
735 "id": 13, |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
736 "input_connections": { |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
737 "searchgui_input": { |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
738 "id": 9, |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
739 "output_name": "searchgui_results" |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
740 } |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
741 }, |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
742 "inputs": [ |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
743 { |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
744 "description": "runtime parameter for tool Peptide Shaker", |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
745 "name": "searchgui_input" |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
746 } |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
747 ], |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
748 "label": null, |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
749 "name": "Peptide Shaker", |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
750 "outputs": [ |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
751 { |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
752 "name": "mzidentML", |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
753 "type": "mzid" |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
754 }, |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
755 { |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
756 "name": "output_cps", |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
757 "type": "peptideshaker_archive" |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
758 }, |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
759 { |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
760 "name": "output_zip", |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
761 "type": "zip" |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
762 }, |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
763 { |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
764 "name": "output_certificate", |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
765 "type": "txt" |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
766 }, |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
767 { |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
768 "name": "output_hierarchical", |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
769 "type": "tabular" |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
770 }, |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
771 { |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
772 "name": "output_psm_phosphorylation", |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
773 "type": "tabular" |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
774 }, |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
775 { |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
776 "name": "output_psm", |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
777 "type": "tabular" |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
778 }, |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
779 { |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
780 "name": "output_extended_psm", |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
781 "type": "tabular" |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
782 }, |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
783 { |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
784 "name": "output_peptides_phosphorylation", |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
785 "type": "tabular" |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
786 }, |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
787 { |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
788 "name": "output_peptides", |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
789 "type": "tabular" |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
790 }, |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
791 { |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
792 "name": "output_proteins_phosphorylation", |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
793 "type": "tabular" |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
794 }, |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
795 { |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
796 "name": "output_proteins", |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
797 "type": "tabular" |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
798 } |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
799 ], |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
800 "position": { |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
801 "left": 959, |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
802 "top": 313 |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
803 }, |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
804 "post_job_actions": { |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
805 "HideDatasetActionmzidentML": { |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
806 "action_arguments": {}, |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
807 "action_type": "HideDatasetAction", |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
808 "output_name": "mzidentML" |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
809 }, |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
810 "HideDatasetActionoutput_cps": { |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
811 "action_arguments": {}, |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
812 "action_type": "HideDatasetAction", |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
813 "output_name": "output_cps" |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
814 }, |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
815 "HideDatasetActionoutput_extended_psm": { |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
816 "action_arguments": {}, |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
817 "action_type": "HideDatasetAction", |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
818 "output_name": "output_extended_psm" |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
819 }, |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
820 "HideDatasetActionoutput_hierarchical": { |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
821 "action_arguments": {}, |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
822 "action_type": "HideDatasetAction", |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
823 "output_name": "output_hierarchical" |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
824 }, |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
825 "HideDatasetActionoutput_peptides": { |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
826 "action_arguments": {}, |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
827 "action_type": "HideDatasetAction", |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
828 "output_name": "output_peptides" |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
829 }, |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
830 "HideDatasetActionoutput_peptides_phosphorylation": { |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
831 "action_arguments": {}, |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
832 "action_type": "HideDatasetAction", |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
833 "output_name": "output_peptides_phosphorylation" |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
834 }, |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
835 "HideDatasetActionoutput_proteins_phosphorylation": { |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
836 "action_arguments": {}, |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
837 "action_type": "HideDatasetAction", |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
838 "output_name": "output_proteins_phosphorylation" |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
839 }, |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
840 "HideDatasetActionoutput_psm_phosphorylation": { |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
841 "action_arguments": {}, |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
842 "action_type": "HideDatasetAction", |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
843 "output_name": "output_psm_phosphorylation" |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
844 }, |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
845 "HideDatasetActionoutput_zip": { |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
846 "action_arguments": {}, |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
847 "action_type": "HideDatasetAction", |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
848 "output_name": "output_zip" |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
849 }, |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
850 "RenameDatasetActionoutput_certificate": { |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
851 "action_arguments": { |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
852 "newname": "PeptideShaker Summary Report: 04112012_JL_HCC827_EGFR_TAP_2_run1" |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
853 }, |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
854 "action_type": "RenameDatasetAction", |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
855 "output_name": "output_certificate" |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
856 }, |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
857 "RenameDatasetActionoutput_proteins": { |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
858 "action_arguments": { |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
859 "newname": "PeptideShaker Protein Report: 04112012_JL_HCC827_EGFR_TAP_2_run1" |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
860 }, |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
861 "action_type": "RenameDatasetAction", |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
862 "output_name": "output_proteins" |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
863 }, |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
864 "RenameDatasetActionoutput_psm": { |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
865 "action_arguments": { |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
866 "newname": "PeptideShaker PSM Report: 04112012_JL_HCC827_EGFR_TAP_2_run1" |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
867 }, |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
868 "action_type": "RenameDatasetAction", |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
869 "output_name": "output_psm" |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
870 } |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
871 }, |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
872 "tool_errors": null, |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
873 "tool_id": "toolshed.g2.bx.psu.edu/repos/galaxyp/peptideshaker/peptide_shaker/1.16.3", |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
874 "tool_shed_repository": { |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
875 "changeset_revision": "7f2aeb19650f", |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
876 "name": "peptideshaker", |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
877 "owner": "galaxyp", |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
878 "tool_shed": "toolshed.g2.bx.psu.edu" |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
879 }, |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
880 "tool_state": "{\"__page__\": 0, \"processing_options\": \"{\\\"peptide_fdr\\\": \\\"5.0\\\", \\\"protein_fdr\\\": \\\"5.0\\\", \\\"protein_fraction_mw_confidence\\\": \\\"95.0\\\", \\\"ptm_score\\\": {\\\"ptm_score_selector\\\": \\\"0\\\", \\\"__current_case__\\\": 0}, \\\"ptm_alignment\\\": \\\"true\\\", \\\"__current_case__\\\": 1, \\\"processing_options_selector\\\": \\\"yes\\\", \\\"psm_fdr\\\": \\\"5.0\\\"}\", \"__rerun_remap_job_id__\": null, \"filtering_options\": \"{\\\"max_precursor_error_type\\\": \\\"1\\\", \\\"filtering_options_selector\\\": \\\"yes\\\", \\\"__current_case__\\\": 1, \\\"max_precursor_error\\\": \\\"10.0\\\", \\\"exclude_unknown_ptms\\\": \\\"true\\\", \\\"max_peptide_length\\\": \\\"75\\\", \\\"min_peptide_length\\\": \\\"6\\\"}\", \"searchgui_input\": \"{\\\"__class__\\\": \\\"RuntimeValue\\\"}\", \"contact_options\": \"{\\\"contact_options_selector\\\": \\\"no\\\", \\\"__current_case__\\\": 0}\", \"outputs\": \"[\\\"3\\\", \\\"7\\\", \\\"0\\\"]\", \"include_sequences\": \"\\\"false\\\"\"}", |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
881 "tool_version": "1.16.3", |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
882 "type": "tool", |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
883 "uuid": "ba7821bf-c567-4fb4-803e-84608b3e3caa", |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
884 "workflow_outputs": [ |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
885 { |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
886 "label": null, |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
887 "output_name": "output_proteins", |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
888 "uuid": "34edffd6-1c64-450c-8e73-76470502022c" |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
889 }, |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
890 { |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
891 "label": null, |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
892 "output_name": "output_psm", |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
893 "uuid": "11989f3d-2a42-491d-88e5-0bb0792a8fb1" |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
894 }, |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
895 { |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
896 "label": null, |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
897 "output_name": "output_certificate", |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
898 "uuid": "79441850-bf30-441a-82e5-ecaebf4f0659" |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
899 } |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
900 ] |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
901 }, |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
902 "14": { |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
903 "annotation": "", |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
904 "content_id": "toolshed.g2.bx.psu.edu/repos/galaxyp/peptideshaker/peptide_shaker/1.16.3", |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
905 "id": 14, |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
906 "input_connections": { |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
907 "searchgui_input": { |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
908 "id": 10, |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
909 "output_name": "searchgui_results" |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
910 } |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
911 }, |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
912 "inputs": [ |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
913 { |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
914 "description": "runtime parameter for tool Peptide Shaker", |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
915 "name": "searchgui_input" |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
916 } |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
917 ], |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
918 "label": null, |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
919 "name": "Peptide Shaker", |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
920 "outputs": [ |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
921 { |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
922 "name": "mzidentML", |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
923 "type": "mzid" |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
924 }, |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
925 { |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
926 "name": "output_cps", |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
927 "type": "peptideshaker_archive" |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
928 }, |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
929 { |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
930 "name": "output_zip", |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
931 "type": "zip" |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
932 }, |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
933 { |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
934 "name": "output_certificate", |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
935 "type": "txt" |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
936 }, |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
937 { |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
938 "name": "output_hierarchical", |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
939 "type": "tabular" |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
940 }, |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
941 { |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
942 "name": "output_psm_phosphorylation", |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
943 "type": "tabular" |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
944 }, |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
945 { |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
946 "name": "output_psm", |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
947 "type": "tabular" |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
948 }, |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
949 { |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
950 "name": "output_extended_psm", |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
951 "type": "tabular" |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
952 }, |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
953 { |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
954 "name": "output_peptides_phosphorylation", |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
955 "type": "tabular" |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
956 }, |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
957 { |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
958 "name": "output_peptides", |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
959 "type": "tabular" |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
960 }, |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
961 { |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
962 "name": "output_proteins_phosphorylation", |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
963 "type": "tabular" |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
964 }, |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
965 { |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
966 "name": "output_proteins", |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
967 "type": "tabular" |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
968 } |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
969 ], |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
970 "position": { |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
971 "left": 905, |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
972 "top": 545 |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
973 }, |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
974 "post_job_actions": { |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
975 "HideDatasetActionmzidentML": { |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
976 "action_arguments": {}, |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
977 "action_type": "HideDatasetAction", |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
978 "output_name": "mzidentML" |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
979 }, |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
980 "HideDatasetActionoutput_cps": { |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
981 "action_arguments": {}, |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
982 "action_type": "HideDatasetAction", |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
983 "output_name": "output_cps" |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
984 }, |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
985 "HideDatasetActionoutput_extended_psm": { |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
986 "action_arguments": {}, |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
987 "action_type": "HideDatasetAction", |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
988 "output_name": "output_extended_psm" |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
989 }, |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
990 "HideDatasetActionoutput_hierarchical": { |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
991 "action_arguments": {}, |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
992 "action_type": "HideDatasetAction", |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
993 "output_name": "output_hierarchical" |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
994 }, |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
995 "HideDatasetActionoutput_peptides": { |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
996 "action_arguments": {}, |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
997 "action_type": "HideDatasetAction", |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
998 "output_name": "output_peptides" |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
999 }, |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1000 "HideDatasetActionoutput_peptides_phosphorylation": { |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1001 "action_arguments": {}, |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1002 "action_type": "HideDatasetAction", |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1003 "output_name": "output_peptides_phosphorylation" |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1004 }, |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1005 "HideDatasetActionoutput_proteins_phosphorylation": { |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1006 "action_arguments": {}, |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1007 "action_type": "HideDatasetAction", |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1008 "output_name": "output_proteins_phosphorylation" |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1009 }, |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1010 "HideDatasetActionoutput_psm_phosphorylation": { |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1011 "action_arguments": {}, |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1012 "action_type": "HideDatasetAction", |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1013 "output_name": "output_psm_phosphorylation" |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1014 }, |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1015 "HideDatasetActionoutput_zip": { |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1016 "action_arguments": {}, |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1017 "action_type": "HideDatasetAction", |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1018 "output_name": "output_zip" |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1019 }, |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1020 "RenameDatasetActionoutput_certificate": { |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1021 "action_arguments": { |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1022 "newname": "PeptideShaker Summary Report: 04112012_JL_HCC827_GFP_TAP_1_run1" |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1023 }, |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1024 "action_type": "RenameDatasetAction", |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1025 "output_name": "output_certificate" |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1026 }, |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1027 "RenameDatasetActionoutput_proteins": { |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1028 "action_arguments": { |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1029 "newname": "PeptideShaker Protein Report: 04112012_JL_HCC827_GFP_TAP_1_run1" |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1030 }, |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1031 "action_type": "RenameDatasetAction", |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1032 "output_name": "output_proteins" |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1033 }, |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1034 "RenameDatasetActionoutput_psm": { |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1035 "action_arguments": { |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1036 "newname": "PeptideShaker PSM Report: 04112012_JL_HCC827_GFP_TAP_1_run1" |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1037 }, |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1038 "action_type": "RenameDatasetAction", |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1039 "output_name": "output_psm" |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1040 } |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1041 }, |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1042 "tool_errors": null, |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1043 "tool_id": "toolshed.g2.bx.psu.edu/repos/galaxyp/peptideshaker/peptide_shaker/1.16.3", |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1044 "tool_shed_repository": { |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1045 "changeset_revision": "7f2aeb19650f", |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1046 "name": "peptideshaker", |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1047 "owner": "galaxyp", |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1048 "tool_shed": "toolshed.g2.bx.psu.edu" |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1049 }, |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1050 "tool_state": "{\"__page__\": 0, \"processing_options\": \"{\\\"peptide_fdr\\\": \\\"5.0\\\", \\\"protein_fdr\\\": \\\"5.0\\\", \\\"protein_fraction_mw_confidence\\\": \\\"95.0\\\", \\\"ptm_score\\\": {\\\"ptm_score_selector\\\": \\\"0\\\", \\\"__current_case__\\\": 0}, \\\"ptm_alignment\\\": \\\"true\\\", \\\"__current_case__\\\": 1, \\\"processing_options_selector\\\": \\\"yes\\\", \\\"psm_fdr\\\": \\\"5.0\\\"}\", \"__rerun_remap_job_id__\": null, \"filtering_options\": \"{\\\"max_precursor_error_type\\\": \\\"1\\\", \\\"filtering_options_selector\\\": \\\"yes\\\", \\\"__current_case__\\\": 1, \\\"max_precursor_error\\\": \\\"10.0\\\", \\\"exclude_unknown_ptms\\\": \\\"true\\\", \\\"max_peptide_length\\\": \\\"75\\\", \\\"min_peptide_length\\\": \\\"6\\\"}\", \"searchgui_input\": \"{\\\"__class__\\\": \\\"RuntimeValue\\\"}\", \"contact_options\": \"{\\\"contact_options_selector\\\": \\\"no\\\", \\\"__current_case__\\\": 0}\", \"outputs\": \"[\\\"3\\\", \\\"7\\\", \\\"0\\\"]\", \"include_sequences\": \"\\\"false\\\"\"}", |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1051 "tool_version": "1.16.3", |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1052 "type": "tool", |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1053 "uuid": "bb1a7289-73ec-4c0e-bb89-0f7547483867", |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1054 "workflow_outputs": [ |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1055 { |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1056 "label": null, |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1057 "output_name": "output_certificate", |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1058 "uuid": "e878162e-ddc9-4751-a8a0-d80394e675e4" |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1059 }, |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1060 { |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1061 "label": null, |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1062 "output_name": "output_psm", |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1063 "uuid": "c4d742d4-41f8-4855-82b3-a417af83c170" |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1064 }, |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1065 { |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1066 "label": null, |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1067 "output_name": "output_proteins", |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1068 "uuid": "1c004ba8-4ae5-49c0-90d5-adc9262f16e9" |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1069 } |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1070 ] |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1071 }, |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1072 "15": { |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1073 "annotation": "", |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1074 "content_id": "toolshed.g2.bx.psu.edu/repos/galaxyp/peptideshaker/peptide_shaker/1.16.3", |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1075 "id": 15, |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1076 "input_connections": { |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1077 "searchgui_input": { |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1078 "id": 11, |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1079 "output_name": "searchgui_results" |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1080 } |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1081 }, |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1082 "inputs": [ |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1083 { |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1084 "description": "runtime parameter for tool Peptide Shaker", |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1085 "name": "searchgui_input" |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1086 } |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1087 ], |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1088 "label": null, |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1089 "name": "Peptide Shaker", |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1090 "outputs": [ |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1091 { |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1092 "name": "mzidentML", |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1093 "type": "mzid" |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1094 }, |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1095 { |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1096 "name": "output_cps", |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1097 "type": "peptideshaker_archive" |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1098 }, |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1099 { |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1100 "name": "output_zip", |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1101 "type": "zip" |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1102 }, |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1103 { |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1104 "name": "output_certificate", |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1105 "type": "txt" |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1106 }, |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1107 { |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1108 "name": "output_hierarchical", |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1109 "type": "tabular" |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1110 }, |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1111 { |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1112 "name": "output_psm_phosphorylation", |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1113 "type": "tabular" |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1114 }, |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1115 { |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1116 "name": "output_psm", |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1117 "type": "tabular" |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1118 }, |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1119 { |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1120 "name": "output_extended_psm", |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1121 "type": "tabular" |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1122 }, |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1123 { |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1124 "name": "output_peptides_phosphorylation", |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1125 "type": "tabular" |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1126 }, |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1127 { |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1128 "name": "output_peptides", |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1129 "type": "tabular" |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1130 }, |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1131 { |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1132 "name": "output_proteins_phosphorylation", |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1133 "type": "tabular" |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1134 }, |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1135 { |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1136 "name": "output_proteins", |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1137 "type": "tabular" |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1138 } |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1139 ], |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1140 "position": { |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1141 "left": 873, |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1142 "top": 829 |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1143 }, |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1144 "post_job_actions": { |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1145 "HideDatasetActionmzidentML": { |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1146 "action_arguments": {}, |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1147 "action_type": "HideDatasetAction", |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1148 "output_name": "mzidentML" |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1149 }, |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1150 "HideDatasetActionoutput_cps": { |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1151 "action_arguments": {}, |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1152 "action_type": "HideDatasetAction", |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1153 "output_name": "output_cps" |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1154 }, |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1155 "HideDatasetActionoutput_extended_psm": { |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1156 "action_arguments": {}, |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1157 "action_type": "HideDatasetAction", |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1158 "output_name": "output_extended_psm" |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1159 }, |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1160 "HideDatasetActionoutput_hierarchical": { |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1161 "action_arguments": {}, |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1162 "action_type": "HideDatasetAction", |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1163 "output_name": "output_hierarchical" |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1164 }, |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1165 "HideDatasetActionoutput_peptides": { |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1166 "action_arguments": {}, |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1167 "action_type": "HideDatasetAction", |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1168 "output_name": "output_peptides" |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1169 }, |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1170 "HideDatasetActionoutput_peptides_phosphorylation": { |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1171 "action_arguments": {}, |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1172 "action_type": "HideDatasetAction", |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1173 "output_name": "output_peptides_phosphorylation" |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1174 }, |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1175 "HideDatasetActionoutput_proteins_phosphorylation": { |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1176 "action_arguments": {}, |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1177 "action_type": "HideDatasetAction", |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1178 "output_name": "output_proteins_phosphorylation" |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1179 }, |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1180 "HideDatasetActionoutput_psm_phosphorylation": { |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1181 "action_arguments": {}, |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1182 "action_type": "HideDatasetAction", |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1183 "output_name": "output_psm_phosphorylation" |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1184 }, |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1185 "HideDatasetActionoutput_zip": { |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1186 "action_arguments": {}, |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1187 "action_type": "HideDatasetAction", |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1188 "output_name": "output_zip" |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1189 }, |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1190 "RenameDatasetActionoutput_certificate": { |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1191 "action_arguments": { |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1192 "newname": "PeptideShaker Summary Report: 04112012_JL_HCC827_GFP_TAP_2_run1" |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1193 }, |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1194 "action_type": "RenameDatasetAction", |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1195 "output_name": "output_certificate" |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1196 }, |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1197 "RenameDatasetActionoutput_proteins": { |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1198 "action_arguments": { |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1199 "newname": "PeptideShaker Protein Report: 04112012_JL_HCC827_GFP_TAP_2_run1" |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1200 }, |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1201 "action_type": "RenameDatasetAction", |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1202 "output_name": "output_proteins" |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1203 }, |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1204 "RenameDatasetActionoutput_psm": { |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1205 "action_arguments": { |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1206 "newname": "PeptideShaker PSM Report: 04112012_JL_HCC827_GFP_TAP_2_run1" |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1207 }, |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1208 "action_type": "RenameDatasetAction", |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1209 "output_name": "output_psm" |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1210 } |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1211 }, |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1212 "tool_errors": null, |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1213 "tool_id": "toolshed.g2.bx.psu.edu/repos/galaxyp/peptideshaker/peptide_shaker/1.16.3", |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1214 "tool_shed_repository": { |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1215 "changeset_revision": "7f2aeb19650f", |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1216 "name": "peptideshaker", |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1217 "owner": "galaxyp", |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1218 "tool_shed": "toolshed.g2.bx.psu.edu" |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1219 }, |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1220 "tool_state": "{\"__page__\": 0, \"processing_options\": \"{\\\"peptide_fdr\\\": \\\"5.0\\\", \\\"protein_fdr\\\": \\\"5.0\\\", \\\"protein_fraction_mw_confidence\\\": \\\"95.0\\\", \\\"ptm_score\\\": {\\\"ptm_score_selector\\\": \\\"0\\\", \\\"__current_case__\\\": 0}, \\\"ptm_alignment\\\": \\\"true\\\", \\\"__current_case__\\\": 1, \\\"processing_options_selector\\\": \\\"yes\\\", \\\"psm_fdr\\\": \\\"5.0\\\"}\", \"__rerun_remap_job_id__\": null, \"filtering_options\": \"{\\\"max_precursor_error_type\\\": \\\"1\\\", \\\"filtering_options_selector\\\": \\\"yes\\\", \\\"__current_case__\\\": 1, \\\"max_precursor_error\\\": \\\"10.0\\\", \\\"exclude_unknown_ptms\\\": \\\"true\\\", \\\"max_peptide_length\\\": \\\"75\\\", \\\"min_peptide_length\\\": \\\"6\\\"}\", \"searchgui_input\": \"{\\\"__class__\\\": \\\"RuntimeValue\\\"}\", \"contact_options\": \"{\\\"contact_options_selector\\\": \\\"no\\\", \\\"__current_case__\\\": 0}\", \"outputs\": \"[\\\"3\\\", \\\"7\\\", \\\"0\\\"]\", \"include_sequences\": \"\\\"false\\\"\"}", |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1221 "tool_version": "1.16.3", |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1222 "type": "tool", |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1223 "uuid": "54bba191-2325-4beb-b13b-fbfc54248145", |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1224 "workflow_outputs": [ |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1225 { |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1226 "label": null, |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1227 "output_name": "output_certificate", |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1228 "uuid": "fd4adacf-fc64-49b3-97fc-283eb89b6fd6" |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1229 }, |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1230 { |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1231 "label": null, |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1232 "output_name": "output_psm", |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1233 "uuid": "20ffbbba-4caa-4ccd-8805-6e3183296ed9" |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1234 }, |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1235 { |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1236 "label": null, |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1237 "output_name": "output_proteins", |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1238 "uuid": "7afcb5c6-2bcf-4d3e-a158-7eb9ac76cf1c" |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1239 } |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1240 ] |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1241 }, |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1242 "16": { |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1243 "annotation": "", |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1244 "content_id": "toolshed.g2.bx.psu.edu/repos/bornea/saint_preprocessing/SAINT_preprocessing_v6/1.0.0", |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1245 "id": 16, |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1246 "input_connections": { |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1247 "type_select|bait_file_in": { |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1248 "id": 6, |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1249 "output_name": "output" |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1250 }, |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1251 "type_select|fasta_db": { |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1252 "id": 7, |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1253 "output_name": "output" |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1254 }, |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1255 "type_select|protein_inputs_0|protein_file": { |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1256 "id": 15, |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1257 "output_name": "output_proteins" |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1258 }, |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1259 "type_select|protein_inputs_1|protein_file": { |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1260 "id": 14, |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1261 "output_name": "output_proteins" |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1262 }, |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1263 "type_select|protein_inputs_2|protein_file": { |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1264 "id": 13, |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1265 "output_name": "output_proteins" |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1266 }, |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1267 "type_select|protein_inputs_3|protein_file": { |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1268 "id": 12, |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1269 "output_name": "output_proteins" |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1270 } |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1271 }, |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1272 "inputs": [ |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1273 { |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1274 "description": "runtime parameter for tool SAINT pre-processing", |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1275 "name": "type_select" |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1276 }, |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1277 { |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1278 "description": "runtime parameter for tool SAINT pre-processing", |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1279 "name": "type_select" |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1280 } |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1281 ], |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1282 "label": null, |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1283 "name": "SAINT pre-processing", |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1284 "outputs": [ |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1285 { |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1286 "name": "Inter_file", |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1287 "type": "txt" |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1288 }, |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1289 { |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1290 "name": "Prey_file", |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1291 "type": "txt" |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1292 }, |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1293 { |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1294 "name": "Bait_file", |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1295 "type": "txt" |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1296 } |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1297 ], |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1298 "position": { |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1299 "left": 1412.5, |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1300 "top": 394 |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1301 }, |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1302 "post_job_actions": { |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1303 "HideDatasetActionBait_file": { |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1304 "action_arguments": {}, |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1305 "action_type": "HideDatasetAction", |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1306 "output_name": "Bait_file" |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1307 }, |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1308 "HideDatasetActionInter_file": { |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1309 "action_arguments": {}, |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1310 "action_type": "HideDatasetAction", |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1311 "output_name": "Inter_file" |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1312 }, |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1313 "HideDatasetActionPrey_file": { |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1314 "action_arguments": {}, |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1315 "action_type": "HideDatasetAction", |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1316 "output_name": "Prey_file" |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1317 } |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1318 }, |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1319 "tool_errors": null, |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1320 "tool_id": "toolshed.g2.bx.psu.edu/repos/bornea/saint_preprocessing/SAINT_preprocessing_v6/1.0.0", |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1321 "tool_shed_repository": { |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1322 "changeset_revision": "6ad498eac0e2", |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1323 "name": "saint_preprocessing", |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1324 "owner": "bornea", |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1325 "tool_shed": "toolshed.g2.bx.psu.edu" |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1326 }, |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1327 "tool_state": "{\"bait\": \"[]\", \"__rerun_remap_job_id__\": null, \"type_select\": \"{\\\"protein_inputs\\\": [{\\\"__index__\\\": 0, \\\"protein_file\\\": {\\\"__class__\\\": \\\"RuntimeValue\\\"}}, {\\\"__index__\\\": 1, \\\"protein_file\\\": {\\\"__class__\\\": \\\"RuntimeValue\\\"}}, {\\\"__index__\\\": 2, \\\"protein_file\\\": {\\\"__class__\\\": \\\"RuntimeValue\\\"}}, {\\\"__index__\\\": 3, \\\"protein_file\\\": {\\\"__class__\\\": \\\"RuntimeValue\\\"}}], \\\"preybool\\\": \\\"true\\\", \\\"fasta_db\\\": {\\\"__class__\\\": \\\"RuntimeValue\\\"}, \\\"bait_file_in\\\": {\\\"__class__\\\": \\\"RuntimeValue\\\"}, \\\"bait_bool\\\": \\\"true\\\", \\\"__current_case__\\\": 3, \\\"use_metric\\\": \\\"Validated_Peptides\\\", \\\"type\\\": \\\"Peptideshaker_ordered_input\\\"}\", \"__page__\": 0}", |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1328 "tool_version": "1.0.0", |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1329 "type": "tool", |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1330 "uuid": "7504f5ce-684d-46f6-bc00-d4b8eaf87b3a", |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1331 "workflow_outputs": [] |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1332 }, |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1333 "17": { |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1334 "annotation": "", |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1335 "content_id": "toolshed.g2.bx.psu.edu/repos/bornea/query_crapome/CRAPomeQuery/1.0.0", |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1336 "id": 17, |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1337 "input_connections": { |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1338 "fasta_db": { |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1339 "id": 7, |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1340 "output_name": "output" |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1341 }, |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1342 "input": { |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1343 "id": 16, |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1344 "output_name": "Prey_file" |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1345 } |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1346 }, |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1347 "inputs": [ |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1348 { |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1349 "description": "runtime parameter for tool Query CRAPome", |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1350 "name": "input" |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1351 }, |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1352 { |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1353 "description": "runtime parameter for tool Query CRAPome", |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1354 "name": "fasta_db" |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1355 } |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1356 ], |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1357 "label": null, |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1358 "name": "Query CRAPome", |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1359 "outputs": [ |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1360 { |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1361 "name": "CrapomeFile", |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1362 "type": "txt" |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1363 } |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1364 ], |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1365 "position": { |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1366 "left": 1267, |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1367 "top": 723 |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1368 }, |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1369 "post_job_actions": { |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1370 "RenameDatasetActionCrapomeFile": { |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1371 "action_arguments": { |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1372 "newname": "CRAPome File Output" |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1373 }, |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1374 "action_type": "RenameDatasetAction", |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1375 "output_name": "CrapomeFile" |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1376 } |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1377 }, |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1378 "tool_errors": null, |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1379 "tool_id": "toolshed.g2.bx.psu.edu/repos/bornea/query_crapome/CRAPomeQuery/1.0.0", |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1380 "tool_shed_repository": { |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1381 "changeset_revision": "f1459638e1bc", |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1382 "name": "query_crapome", |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1383 "owner": "bornea", |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1384 "tool_shed": "toolshed.g2.bx.psu.edu" |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1385 }, |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1386 "tool_state": "{\"input\": \"{\\\"__class__\\\": \\\"RuntimeValue\\\"}\", \"__rerun_remap_job_id__\": null, \"fasta_db\": \"{\\\"__class__\\\": \\\"RuntimeValue\\\"}\", \"species\": \"\\\"HUMAN\\\"\", \"__page__\": 0}", |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1387 "tool_version": "1.0.0", |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1388 "type": "tool", |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1389 "uuid": "16096e29-d534-4a6d-9627-e7e287798c71", |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1390 "workflow_outputs": [ |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1391 { |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1392 "label": null, |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1393 "output_name": "CrapomeFile", |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1394 "uuid": "1f90a8ba-22ee-45c4-9018-98a153162583" |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1395 } |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1396 ] |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1397 }, |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1398 "18": { |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1399 "annotation": "", |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1400 "content_id": "toolshed.g2.bx.psu.edu/repos/bornea/saintexpress/saint_wrapper/1.0.0", |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1401 "id": 18, |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1402 "input_connections": { |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1403 "bait_input": { |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1404 "id": 16, |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1405 "output_name": "Bait_file" |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1406 }, |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1407 "inter_input": { |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1408 "id": 16, |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1409 "output_name": "Inter_file" |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1410 }, |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1411 "prey_input": { |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1412 "id": 16, |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1413 "output_name": "Prey_file" |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1414 } |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1415 }, |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1416 "inputs": [ |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1417 { |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1418 "description": "runtime parameter for tool SAINTexpress", |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1419 "name": "go_file" |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1420 }, |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1421 { |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1422 "description": "runtime parameter for tool SAINTexpress", |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1423 "name": "bait_input" |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1424 }, |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1425 { |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1426 "description": "runtime parameter for tool SAINTexpress", |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1427 "name": "inter_input" |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1428 }, |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1429 { |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1430 "description": "runtime parameter for tool SAINTexpress", |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1431 "name": "prey_input" |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1432 } |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1433 ], |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1434 "label": null, |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1435 "name": "SAINTexpress", |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1436 "outputs": [ |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1437 { |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1438 "name": "SAINT_output", |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1439 "type": "txt" |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1440 } |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1441 ], |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1442 "position": { |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1443 "left": 1763.5, |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1444 "top": 524 |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1445 }, |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1446 "post_job_actions": { |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1447 "RenameDatasetActionSAINT_output": { |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1448 "action_arguments": { |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1449 "newname": "SAINT Output File" |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1450 }, |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1451 "action_type": "RenameDatasetAction", |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1452 "output_name": "SAINT_output" |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1453 } |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1454 }, |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1455 "tool_errors": null, |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1456 "tool_id": "toolshed.g2.bx.psu.edu/repos/bornea/saintexpress/saint_wrapper/1.0.0", |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1457 "tool_shed_repository": { |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1458 "changeset_revision": "67631a640534", |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1459 "name": "saintexpress", |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1460 "owner": "bornea", |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1461 "tool_shed": "toolshed.g2.bx.psu.edu" |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1462 }, |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1463 "tool_state": "{\"rep_num\": \"\\\"100\\\"\", \"__page__\": 0, \"go_file\": \"{\\\"__class__\\\": \\\"RuntimeValue\\\"}\", \"__rerun_remap_job_id__\": null, \"bait_input\": \"{\\\"__class__\\\": \\\"RuntimeValue\\\"}\", \"vc_bool\": \"\\\"false\\\"\", \"inter_input\": \"{\\\"__class__\\\": \\\"RuntimeValue\\\"}\", \"go_bool\": \"\\\"false\\\"\", \"prey_input\": \"{\\\"__class__\\\": \\\"RuntimeValue\\\"}\", \"vc_num\": \"\\\"1\\\"\"}", |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1464 "tool_version": "1.0.0", |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1465 "type": "tool", |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1466 "uuid": "86e2c9ce-be72-496b-84c2-7e3027d0187e", |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1467 "workflow_outputs": [ |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1468 { |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1469 "label": null, |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1470 "output_name": "SAINT_output", |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1471 "uuid": "f4c612f6-d132-444f-9474-f95f7b968382" |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1472 } |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1473 ] |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1474 } |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1475 }, |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1476 "uuid": "4f118197-8eee-42d5-ba46-3abfcb3f127b" |
0b6e9cc279fc
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/apostl commit 79aa418c07e54b5f152681452767f7c8a40379b6
galaxyp
parents:
diff
changeset
|
1477 } |