annotate PeptideShaker_Identifcation_from_mzML.ga @ 1:673718067538 draft default tip

planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
author galaxyp
date Mon, 16 May 2016 09:16:49 -0400
parents
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
1
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
1 {
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
2 "a_galaxy_workflow": "true",
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
3 "annotation": "",
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
4 "format-version": "0.1",
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
5 "name": "Workflow 1 for ASMS 2016 Workshop",
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
6 "steps": {
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
7 "0": {
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
8 "annotation": "",
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
9 "content_id": "toolshed.g2.bx.psu.edu/repos/galaxyp/dbbuilder/dbbuilder/0.2.0",
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
10 "id": 0,
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
11 "input_connections": {},
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
12 "inputs": [],
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
13 "label": null,
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
14 "name": "Protein Database Downloader",
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
15 "outputs": [
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
16 {
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
17 "name": "output_database",
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
18 "type": "fasta"
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
19 }
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
20 ],
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
21 "position": {
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
22 "left": 245.5,
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
23 "top": 147
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
24 },
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
25 "post_job_actions": {},
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
26 "tool_errors": null,
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
27 "tool_id": "toolshed.g2.bx.psu.edu/repos/galaxyp/dbbuilder/dbbuilder/0.2.0",
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
28 "tool_state": "{\"source\": \"{\\\"set\\\": \\\"+keyword%3a1185\\\", \\\"from\\\": \\\"uniprot\\\", \\\"taxon\\\": \\\"10090\\\", \\\"reviewed\\\": \\\"+\\\", \\\"__current_case__\\\": 0, \\\"include_isoform\\\": \\\"True\\\"}\", \"__rerun_remap_job_id__\": null, \"__page__\": 0}",
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
29 "tool_version": "0.2.0",
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
30 "type": "tool",
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
31 "uuid": "0130f0ee-1abf-4157-94b3-62e502b9c061",
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
32 "workflow_outputs": [
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
33 {
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
34 "label": " Mouse Protein Database",
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
35 "output_name": "output_database",
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
36 "uuid": "50b914ea-7b4d-4d86-b890-910f9b14f7f6"
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
37 }
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
38 ]
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
39 },
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
40 "1": {
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
41 "annotation": "",
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
42 "content_id": "toolshed.g2.bx.psu.edu/repos/galaxyp/dbbuilder/dbbuilder/0.2.0",
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
43 "id": 1,
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
44 "input_connections": {},
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
45 "inputs": [],
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
46 "label": null,
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
47 "name": "Protein Database Downloader",
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
48 "outputs": [
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
49 {
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
50 "name": "output_database",
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
51 "type": "fasta"
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
52 }
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
53 ],
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
54 "position": {
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
55 "left": 245.5,
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
56 "top": 248
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
57 },
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
58 "post_job_actions": {
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
59 "HideDatasetActionoutput_database": {
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
60 "action_arguments": {},
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
61 "action_type": "HideDatasetAction",
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
62 "output_name": "output_database"
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
63 },
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
64 "RenameDatasetActionoutput_database": {
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
65 "action_arguments": {
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
66 "newname": "Contaminant Protein Database"
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
67 },
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
68 "action_type": "RenameDatasetAction",
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
69 "output_name": "output_database"
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
70 }
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
71 },
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
72 "tool_errors": null,
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
73 "tool_id": "toolshed.g2.bx.psu.edu/repos/galaxyp/dbbuilder/dbbuilder/0.2.0",
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
74 "tool_state": "{\"source\": \"{\\\"from\\\": \\\"cRAP\\\", \\\"__current_case__\\\": 1}\", \"__rerun_remap_job_id__\": null, \"__page__\": 0}",
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
75 "tool_version": "0.2.0",
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
76 "type": "tool",
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
77 "uuid": "2804e8cd-8bb1-4ffc-9dcc-3ac5e373943a",
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
78 "workflow_outputs": []
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
79 },
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
80 "2": {
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
81 "annotation": "From proB RNAseq SpliceDB workflow",
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
82 "content_id": null,
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
83 "id": 2,
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
84 "input_connections": {},
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
85 "inputs": [
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
86 {
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
87 "description": "From proB RNAseq SpliceDB workflow",
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
88 "name": "proB Splice Isoform Database"
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
89 }
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
90 ],
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
91 "label": null,
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
92 "name": "Input dataset",
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
93 "outputs": [],
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
94 "position": {
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
95 "left": 177,
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
96 "top": 370
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
97 },
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
98 "tool_errors": null,
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
99 "tool_id": null,
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
100 "tool_state": "{\"name\": \"proB Splice Isoform Database\"}",
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
101 "tool_version": null,
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
102 "type": "data_input",
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
103 "uuid": "afb73119-0730-4926-b571-fc15a9fba9c5",
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
104 "workflow_outputs": []
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
105 },
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
106 "3": {
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
107 "annotation": "From preB RNAseq SpliceDB workflow",
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
108 "content_id": null,
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
109 "id": 3,
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
110 "input_connections": {},
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
111 "inputs": [
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
112 {
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
113 "description": "From preB RNAseq SpliceDB workflow",
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
114 "name": "preB Splice Isoform Database"
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
115 }
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
116 ],
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
117 "label": null,
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
118 "name": "Input dataset",
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
119 "outputs": [],
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
120 "position": {
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
121 "left": 188,
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
122 "top": 495
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
123 },
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
124 "tool_errors": null,
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
125 "tool_id": null,
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
126 "tool_state": "{\"name\": \"preB Splice Isoform Database\"}",
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
127 "tool_version": null,
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
128 "type": "data_input",
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
129 "uuid": "1c18cd30-ba5a-4c48-9d68-151faf005b59",
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
130 "workflow_outputs": []
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
131 },
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
132 "4": {
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
133 "annotation": "",
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
134 "content_id": null,
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
135 "id": 4,
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
136 "input_connections": {},
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
137 "inputs": [
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
138 {
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
139 "description": "",
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
140 "name": "mzML Spectrum files"
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
141 }
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
142 ],
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
143 "label": null,
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
144 "name": "Input dataset collection",
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
145 "outputs": [],
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
146 "position": {
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
147 "left": 256.5,
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
148 "top": 642
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
149 },
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
150 "tool_errors": null,
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
151 "tool_id": null,
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
152 "tool_state": "{\"collection_type\": \"list\", \"name\": \"mzML Spectrum files\"}",
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
153 "tool_version": null,
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
154 "type": "data_collection_input",
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
155 "uuid": "7e4ce412-2dc8-4905-959b-b765c6fe3726",
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
156 "workflow_outputs": []
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
157 },
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
158 "5": {
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
159 "annotation": "",
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
160 "content_id": "toolshed.g2.bx.psu.edu/repos/galaxyp/fasta_merge_files_and_filter_unique_sequences/fasta_merge_files_and_filter_unique_sequences/1.0",
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
161 "id": 5,
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
162 "input_connections": {
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
163 "inputs_0|input": {
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
164 "id": 2,
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
165 "output_name": "output"
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
166 },
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
167 "inputs_1|input": {
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
168 "id": 3,
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
169 "output_name": "output"
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
170 }
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
171 },
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
172 "inputs": [],
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
173 "label": null,
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
174 "name": "FASTA Merge Files and Filter Unique Sequences",
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
175 "outputs": [
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
176 {
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
177 "name": "output",
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
178 "type": "fasta"
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
179 }
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
180 ],
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
181 "position": {
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
182 "left": 399.5,
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
183 "top": 397
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
184 },
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
185 "post_job_actions": {
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
186 "HideDatasetActionoutput": {
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
187 "action_arguments": {},
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
188 "action_type": "HideDatasetAction",
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
189 "output_name": "output"
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
190 },
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
191 "RenameDatasetActionoutput": {
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
192 "action_arguments": {
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
193 "newname": "Merged Sample Splice Isoform Databases: proB + preB"
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
194 },
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
195 "action_type": "RenameDatasetAction",
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
196 "output_name": "output"
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
197 }
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
198 },
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
199 "tool_errors": null,
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
200 "tool_id": "toolshed.g2.bx.psu.edu/repos/galaxyp/fasta_merge_files_and_filter_unique_sequences/fasta_merge_files_and_filter_unique_sequences/1.0",
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
201 "tool_state": "{\"inputs\": \"[{\\\"__index__\\\": 0, \\\"input\\\": null}, {\\\"__index__\\\": 1, \\\"input\\\": null}]\", \"__rerun_remap_job_id__\": null, \"__page__\": 0}",
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
202 "tool_version": "1.0",
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
203 "type": "tool",
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
204 "uuid": "dcdf18e5-3d06-4a10-a717-ef0c976345e6",
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
205 "workflow_outputs": []
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
206 },
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
207 "6": {
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
208 "annotation": "",
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
209 "content_id": "toolshed.g2.bx.psu.edu/repos/galaxyp/mgf_formatter/mgf_formatter/0.1.0",
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
210 "id": 6,
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
211 "input_connections": {
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
212 "type|inputs": {
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
213 "id": 4,
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
214 "output_name": "output"
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
215 }
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
216 },
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
217 "inputs": [],
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
218 "label": null,
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
219 "name": "MGF Formatter",
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
220 "outputs": [
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
221 {
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
222 "name": "output",
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
223 "type": "mgf"
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
224 }
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
225 ],
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
226 "position": {
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
227 "left": 612.5,
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
228 "top": 609
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
229 },
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
230 "post_job_actions": {
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
231 "HideDatasetActionoutput": {
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
232 "action_arguments": {},
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
233 "action_type": "HideDatasetAction",
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
234 "output_name": "output"
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
235 }
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
236 },
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
237 "tool_errors": null,
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
238 "tool_id": "toolshed.g2.bx.psu.edu/repos/galaxyp/mgf_formatter/mgf_formatter/0.1.0",
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
239 "tool_state": "{\"__page__\": 0, \"itraq_filter\": \"\\\"True\\\"\", \"__rerun_remap_job_id__\": null, \"type\": \"{\\\"input_type\\\": \\\"mzml\\\", \\\"__current_case__\\\": 0, \\\"inputs\\\": null}\", \"mgf_format\": \"\\\"DEFAULT\\\"\"}",
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
240 "tool_version": "0.1.0",
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
241 "type": "tool",
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
242 "uuid": "52cd6753-b0e6-4631-a98f-b7962b6ddc9b",
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
243 "workflow_outputs": []
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
244 },
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
245 "7": {
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
246 "annotation": "",
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
247 "content_id": "toolshed.g2.bx.psu.edu/repos/galaxyp/fasta_merge_files_and_filter_unique_sequences/fasta_merge_files_and_filter_unique_sequences/1.0",
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
248 "id": 7,
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
249 "input_connections": {
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
250 "inputs_0|input": {
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
251 "id": 0,
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
252 "output_name": "output_database"
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
253 },
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
254 "inputs_1|input": {
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
255 "id": 1,
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
256 "output_name": "output_database"
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
257 },
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
258 "inputs_2|input": {
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
259 "id": 5,
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
260 "output_name": "output"
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
261 }
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
262 },
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
263 "inputs": [],
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
264 "label": null,
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
265 "name": "FASTA Merge Files and Filter Unique Sequences",
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
266 "outputs": [
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
267 {
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
268 "name": "output",
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
269 "type": "fasta"
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
270 }
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
271 ],
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
272 "position": {
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
273 "left": 711.5,
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
274 "top": 209
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
275 },
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
276 "post_job_actions": {
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
277 "HideDatasetActionoutput": {
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
278 "action_arguments": {},
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
279 "action_type": "HideDatasetAction",
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
280 "output_name": "output"
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
281 }
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
282 },
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
283 "tool_errors": null,
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
284 "tool_id": "toolshed.g2.bx.psu.edu/repos/galaxyp/fasta_merge_files_and_filter_unique_sequences/fasta_merge_files_and_filter_unique_sequences/1.0",
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
285 "tool_state": "{\"inputs\": \"[{\\\"__index__\\\": 0, \\\"input\\\": null}, {\\\"__index__\\\": 1, \\\"input\\\": null}, {\\\"__index__\\\": 2, \\\"input\\\": null}]\", \"__rerun_remap_job_id__\": null, \"chromInfo\": \"\\\"/website/galaxyp2014.msi.umn.edu/galaxy-central/tool-data/shared/ucsc/chrom/GRCm38_canon.len\\\"\", \"__page__\": 0}",
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
286 "tool_version": "1.0",
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
287 "type": "tool",
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
288 "uuid": "c138e24b-4cb8-4e40-b277-aff37cbf6ba2",
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
289 "workflow_outputs": []
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
290 },
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
291 "8": {
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
292 "annotation": "",
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
293 "content_id": "toolshed.g2.bx.psu.edu/repos/galaxyp/peptideshaker/search_gui/2.8.0",
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
294 "id": 8,
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
295 "input_connections": {
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
296 "input_database": {
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
297 "id": 7,
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
298 "output_name": "output"
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
299 },
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
300 "peak_lists": {
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
301 "id": 6,
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
302 "output_name": "output"
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
303 }
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
304 },
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
305 "inputs": [],
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
306 "label": null,
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
307 "name": "Search GUI",
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
308 "outputs": [
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
309 {
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
310 "name": "searchgui_results",
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
311 "type": "searchgui_archive"
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
312 }
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
313 ],
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
314 "position": {
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
315 "left": 992.5,
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
316 "top": 412
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
317 },
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
318 "post_job_actions": {
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
319 "HideDatasetActionsearchgui_results": {
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
320 "action_arguments": {},
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
321 "action_type": "HideDatasetAction",
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
322 "output_name": "searchgui_results"
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
323 }
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
324 },
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
325 "tool_errors": null,
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
326 "tool_id": "toolshed.g2.bx.psu.edu/repos/galaxyp/peptideshaker/search_gui/2.8.0",
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
327 "tool_state": "{\"msgf\": \"{\\\"msgf_advanced\\\": \\\"no\\\", \\\"__current_case__\\\": 0}\", \"use_gene_mapping\": \"\\\"False\\\"\", \"min_charge\": \"\\\"2\\\"\", \"__page__\": 0, \"peak_lists\": \"null\", \"engines\": \"[\\\"X!Tandem\\\", \\\"MSGF\\\", \\\"OMSSA\\\", \\\"Comet\\\"]\", \"__rerun_remap_job_id__\": null, \"create_decoy\": \"\\\"True\\\"\", \"enzyme\": \"\\\"Trypsin\\\"\", \"precursor_ion_tol_units\": \"\\\"1\\\"\", \"omssa\": \"{\\\"omssa_advanced\\\": \\\"no\\\", \\\"__current_case__\\\": 0}\", \"precursor_ion_tol\": \"\\\"10.0\\\"\", \"variable_modifications\": \"[\\\"Oxidation of M\\\", \\\"iTRAQ 4-plex of Y\\\"]\", \"input_database\": \"null\", \"fragment_tol\": \"\\\"0.1\\\"\", \"reverse_ion\": \"\\\"y\\\"\", \"forward_ion\": \"\\\"b\\\"\", \"searchgui_advanced\": \"{\\\"searchgui_advanced_selector\\\": \\\"basic\\\", \\\"__current_case__\\\": 0}\", \"xtandem\": \"{\\\"xtandem_quick_acetyl\\\": \\\"False\\\", \\\"xtandem_min_peaks\\\": \\\"15\\\", \\\"xtandem_quick_pyro\\\": \\\"False\\\", \\\"xtandem_stp_bias\\\": \\\"False\\\", \\\"xtandem_advanced\\\": \\\"yes\\\", \\\"xtandem_dynamic_range\\\": \\\"100\\\", \\\"xtandem_min_prec_mass\\\": \\\"200\\\", \\\"xtandem_output_sequences\\\": \\\"False\\\", \\\"__current_case__\\\": 1, \\\"xtandem_output_proteins\\\": \\\"False\\\", \\\"xtandem_output_spectra\\\": \\\"True\\\", \\\"xtandem_npeaks\\\": \\\"50\\\", \\\"xtandem_noise_suppr\\\": \\\"True\\\", \\\"xtandem_min_frag_mz\\\": \\\"200\\\", \\\"xtandem_evalue\\\": \\\"100.0\\\", \\\"xtandem_refine\\\": {\\\"xtandem_refine_selector\\\": \\\"no\\\", \\\"__current_case__\\\": 0}}\", \"max_charge\": \"\\\"6\\\"\", \"fixed_modifications\": \"[\\\"Carbamidomethylation of C\\\", \\\"iTRAQ 4-plex of K\\\", \\\"iTRAQ 4-plex of peptide N-term\\\"]\", \"comet\": \"{\\\"comet_advanced\\\": \\\"no\\\", \\\"__current_case__\\\": 0}\", \"missed_cleavages\": \"\\\"2\\\"\"}",
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
328 "tool_version": "2.8.0",
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
329 "type": "tool",
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
330 "uuid": "aaa7fa44-ab4f-4f0c-8497-235885e4e8cb",
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
331 "workflow_outputs": []
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
332 },
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
333 "9": {
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
334 "annotation": "",
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
335 "content_id": "toolshed.g2.bx.psu.edu/repos/galaxyp/peptideshaker/peptide_shaker/1.10.0",
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
336 "id": 9,
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
337 "input_connections": {
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
338 "searchgui_input": {
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
339 "id": 8,
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
340 "output_name": "searchgui_results"
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
341 }
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
342 },
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
343 "inputs": [],
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
344 "label": null,
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
345 "name": "Peptide Shaker",
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
346 "outputs": [
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
347 {
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
348 "name": "mzidentML",
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
349 "type": "mzid"
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
350 },
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
351 {
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
352 "name": "output_cps",
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
353 "type": "peptideshaker_archive"
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
354 },
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
355 {
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
356 "name": "output_zip",
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
357 "type": "zip"
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
358 },
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
359 {
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
360 "name": "output_certificate",
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
361 "type": "txt"
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
362 },
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
363 {
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
364 "name": "output_hierarchical",
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
365 "type": "tabular"
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
366 },
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
367 {
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
368 "name": "output_psm_phosphorylation",
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
369 "type": "tabular"
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
370 },
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
371 {
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
372 "name": "output_psm",
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
373 "type": "tabular"
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
374 },
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
375 {
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
376 "name": "output_peptides_phosphorylation",
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
377 "type": "tabular"
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
378 },
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
379 {
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
380 "name": "output_peptides",
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
381 "type": "tabular"
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
382 },
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
383 {
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
384 "name": "output_proteins_phosphorylation",
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
385 "type": "tabular"
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
386 },
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
387 {
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
388 "name": "output_proteins",
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
389 "type": "tabular"
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
390 }
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
391 ],
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
392 "position": {
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
393 "left": 1343.5,
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
394 "top": 285
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
395 },
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
396 "post_job_actions": {
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
397 "HideDatasetActionmzidentML": {
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
398 "action_arguments": {},
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
399 "action_type": "HideDatasetAction",
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
400 "output_name": "mzidentML"
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
401 },
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
402 "HideDatasetActionoutput_certificate": {
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
403 "action_arguments": {},
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
404 "action_type": "HideDatasetAction",
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
405 "output_name": "output_certificate"
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
406 },
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
407 "HideDatasetActionoutput_cps": {
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
408 "action_arguments": {},
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
409 "action_type": "HideDatasetAction",
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
410 "output_name": "output_cps"
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
411 },
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
412 "HideDatasetActionoutput_hierarchical": {
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
413 "action_arguments": {},
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
414 "action_type": "HideDatasetAction",
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
415 "output_name": "output_hierarchical"
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
416 },
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
417 "HideDatasetActionoutput_peptides": {
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
418 "action_arguments": {},
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
419 "action_type": "HideDatasetAction",
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
420 "output_name": "output_peptides"
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
421 },
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
422 "HideDatasetActionoutput_peptides_phosphorylation": {
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
423 "action_arguments": {},
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
424 "action_type": "HideDatasetAction",
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
425 "output_name": "output_peptides_phosphorylation"
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
426 },
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
427 "HideDatasetActionoutput_proteins": {
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
428 "action_arguments": {},
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
429 "action_type": "HideDatasetAction",
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
430 "output_name": "output_proteins"
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
431 },
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
432 "HideDatasetActionoutput_proteins_phosphorylation": {
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
433 "action_arguments": {},
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
434 "action_type": "HideDatasetAction",
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
435 "output_name": "output_proteins_phosphorylation"
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
436 },
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
437 "HideDatasetActionoutput_psm": {
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
438 "action_arguments": {},
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
439 "action_type": "HideDatasetAction",
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
440 "output_name": "output_psm"
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
441 },
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
442 "HideDatasetActionoutput_psm_phosphorylation": {
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
443 "action_arguments": {},
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
444 "action_type": "HideDatasetAction",
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
445 "output_name": "output_psm_phosphorylation"
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
446 },
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
447 "HideDatasetActionoutput_zip": {
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
448 "action_arguments": {},
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
449 "action_type": "HideDatasetAction",
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
450 "output_name": "output_zip"
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
451 }
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
452 },
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
453 "tool_errors": null,
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
454 "tool_id": "toolshed.g2.bx.psu.edu/repos/galaxyp/peptideshaker/peptide_shaker/1.10.0",
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
455 "tool_state": "{\"__page__\": 0, \"processing_options\": \"{\\\"processing_options_selector\\\": \\\"no\\\", \\\"__current_case__\\\": 0}\", \"__rerun_remap_job_id__\": null, \"filtering_options\": \"{\\\"max_precursor_error_type\\\": \\\"1\\\", \\\"filtering_options_selector\\\": \\\"yes\\\", \\\"__current_case__\\\": 1, \\\"max_precursor_error\\\": \\\"10.0\\\", \\\"exclude_unknown_ptms\\\": \\\"True\\\", \\\"max_peptide_length\\\": \\\"50\\\", \\\"min_peptide_length\\\": \\\"6\\\"}\", \"searchgui_input\": \"null\", \"species_type\": \"{\\\"species_type_selector\\\": \\\"no_species_type\\\", \\\"__current_case__\\\": 0}\", \"outputs\": \"[\\\"mzidentML\\\", \\\"3\\\", \\\"7\\\", \\\"0\\\"]\", \"chromInfo\": \"\\\"/website/galaxyp2014.msi.umn.edu/galaxy-central/tool-data/shared/ucsc/chrom/GRCm38_canon.len\\\"\"}",
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
456 "tool_version": "1.10.0",
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
457 "type": "tool",
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
458 "uuid": "4ed37c6f-a6a2-4e8b-ba45-620e8b66445b",
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
459 "workflow_outputs": []
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
460 }
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
461 },
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
462 "uuid": "a3d518ca-b4fd-48ca-884e-45ca7dd027dc"
673718067538 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/workflows/asms_tutorial_2016 commit 16fc7b82dcada630bb8eba892679d46041e0efbb-dirty
galaxyp
parents:
diff changeset
463 }