diff idpicker.xml @ 0:35cf23cd8c3d draft

Initial commit.

--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/idpicker.xml	Fri May 10 17:06:14 2013 -0400
@@ -0,0 +1,56 @@
+<tool id="idpicker" name="IDPicker 3" version="0.1.0">
+  <description>
+    Assemble parsimonious protien identifications.
+  </description>
+  <configfiles>
+    <configfile name="group_config"># Simple format group:group_name followed by pairs of name:name and path:path lines
+#for $group in $groups:
+group:$group.group_name
+#for $idpdb_input in $group.idpdb_inputs:
+name:${idpdb_input.display_name}
+path:${idpdb_input}
+#end for
+#end for
+    </configfile>
+  </configfiles>
+  <command interpreter="python">
+    idpicker_wrapper.py --input $group_config --output $output
+  </command>
+  <inputs>
+    <param format="idpdb" name="outside_inputs" type="data" multiple="true" label="idpDB Inputs" help="Run results through idpQonvert tool to produce idpDB files for IDPicker." />
+    <repeat name="groups" title="Experimental Group">
+      <param name="group_name" type="text" label="Group Name" help="Name for the group (use only letters and numbers)." />
+      <param format="idpdb" name="idpdb_inputs" type="data" multiple="true" label="idpDB Inputs" help="Run results through idpQonvert tool to produce idpDB files for IDPicker." />
+    </repeat>
+  </inputs>
+  <outputs>
+    <data format="idpdb" name="output" />
+  </outputs>
+  <requirements>
+    <requirement type="package">idpicker</requirement>
+  </requirements>
+  <help>
+**WARNING**
+
+This tool does not current work.
+
+**What it does**
+
+
+
+** Building Groups **
+
+Build arbitrary hierarchy by nesting groups with colon (e.g. control:666Gx6).
+
+http://fenchurch.mc.vanderbilt.edu/bumbershoot/idpicker/index_files/image003.gif
+
+------
+
+
+**Citation**
+
+For the underlying tool, please cite `TODO`
+
+If you use this tool in Galaxy, please cite TODO
+  </help>
+</tool>
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