Mercurial > repos > galaxyp > calisp
view feather2tsv.py @ 0:6d93529d19d4 draft
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/calisp commit 060699366b6dd19ad6c3ef3f332f63cc55d75dce
author | galaxyp |
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date | Thu, 01 Jun 2023 08:34:14 +0000 |
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#!/usr/bin/env python """ based on https://github.com/kinestetika/Calisp/blob/master/benchmarking/sip%20benchmarking.ipynb """ import argparse import os import pandas as pd def load_calisp_data(filename): # (1) load data if os.path.isdir(filename): file_data = [] for f in os.listdir(filename): if not f.endswith(".feather"): continue f = os.path.join(filename, f) file_data.append(pd.read_feather(f)) base, _ = os.path.splitext(f) file_data[-1].to_csv(f"{base}.tsv", sep="\t") data = pd.concat(file_data) else: data = pd.read_feather(filename) base, _ = os.path.splitext(filename) data.to_csv(f"{base}.tsv", sep="\t") parser = argparse.ArgumentParser(description='feather2tsv') parser.add_argument('--calisp_output', required=True, help='feather file') args = parser.parse_args() data = load_calisp_data(args.calisp_output)