Mercurial > repos > galaxyp > cardinal_classification
annotate test-data/out3.imzml @ 4:47fc5b518ffc draft
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cardinal commit ecdc3a64aa245d80dbc5487b2bf10a85a43adc6d
author | galaxyp |
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date | Fri, 22 Mar 2019 08:13:29 -0400 |
parents | cbc7e53518ce |
children | b574b84afc4d |
rev | line source |
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2
cbc7e53518ce
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cardinal commit f127be2141cf22e269c85282d226eb16fe14a9c1
galaxyp
parents:
diff
changeset
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1 <?xml version="1.0"?> |
cbc7e53518ce
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cardinal commit f127be2141cf22e269c85282d226eb16fe14a9c1
galaxyp
parents:
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2 <mzML version="1.1" xmlns="http://psi.hupo.org/ms/mzml" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://psi.hupo.org/ms/mzml http://psidev.info/files/ms/mzML/xsd/mzML1.1.0_idx.xsd"> |
cbc7e53518ce
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cardinal commit f127be2141cf22e269c85282d226eb16fe14a9c1
galaxyp
parents:
diff
changeset
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3 <cvList count="3"> |
cbc7e53518ce
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cardinal commit f127be2141cf22e269c85282d226eb16fe14a9c1
galaxyp
parents:
diff
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4 <cv id="MS" fullName="Proteomics Standards Initiative Mass Spectrometry Ontology" version="1.3.1" URI="http://psidev.info/ms/mzML/psi-ms.obo" /> |
cbc7e53518ce
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cardinal commit f127be2141cf22e269c85282d226eb16fe14a9c1
galaxyp
parents:
diff
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5 <cv id="UO" fullName="Unit Ontology" version="1.15" URI="http://obo.cvs.sourceforge.net/obo/obo/ontology/phenotype/unit.obo" /> |
cbc7e53518ce
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cardinal commit f127be2141cf22e269c85282d226eb16fe14a9c1
galaxyp
parents:
diff
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6 <cv id="IMS" fullName="Imaging MS Ontology" version="0.9.1" URI="http://www.maldi-msi.org/download/imzml/imagingMS.obo" /> |
cbc7e53518ce
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cardinal commit f127be2141cf22e269c85282d226eb16fe14a9c1
galaxyp
parents:
diff
changeset
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7 </cvList> |
cbc7e53518ce
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cardinal commit f127be2141cf22e269c85282d226eb16fe14a9c1
galaxyp
parents:
diff
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8 <fileDescription> |
cbc7e53518ce
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cardinal commit f127be2141cf22e269c85282d226eb16fe14a9c1
galaxyp
parents:
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9 <fileContent> |
cbc7e53518ce
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cardinal commit f127be2141cf22e269c85282d226eb16fe14a9c1
galaxyp
parents:
diff
changeset
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10 <cvParam cvRef="MS" accession="MS:1000579" name="MS1 spectrum" value="" /> |
cbc7e53518ce
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cardinal commit f127be2141cf22e269c85282d226eb16fe14a9c1
galaxyp
parents:
diff
changeset
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11 <cvParam cvRef="MS" accession="MS:1000128" name="profile spectrum" value="" /> |
cbc7e53518ce
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cardinal commit f127be2141cf22e269c85282d226eb16fe14a9c1
galaxyp
parents:
diff
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12 <cvParam cvRef="IMS" accession="IMS:1000080" name="universally unique identifier" value="{AEDF2DEE-A321-4DAF-B971-943AE2AF79A6}" /> |
cbc7e53518ce
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cardinal commit f127be2141cf22e269c85282d226eb16fe14a9c1
galaxyp
parents:
diff
changeset
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13 <cvParam cvRef="IMS" accession="IMS:1000091" name="ibd SHA-1" value="8311A159EC925605745E409F14BB6C570FF59ACA" /> |
cbc7e53518ce
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cardinal commit f127be2141cf22e269c85282d226eb16fe14a9c1
galaxyp
parents:
diff
changeset
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14 <cvParam cvRef="IMS" accession="IMS:1000030" name="continuous" value="" /> |
cbc7e53518ce
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cardinal commit f127be2141cf22e269c85282d226eb16fe14a9c1
galaxyp
parents:
diff
changeset
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15 </fileContent> |
cbc7e53518ce
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cardinal commit f127be2141cf22e269c85282d226eb16fe14a9c1
galaxyp
parents:
diff
changeset
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16 </fileDescription> |
cbc7e53518ce
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cardinal commit f127be2141cf22e269c85282d226eb16fe14a9c1
galaxyp
parents:
diff
changeset
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17 <referenceableParamGroupList count="4"> |
cbc7e53518ce
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cardinal commit f127be2141cf22e269c85282d226eb16fe14a9c1
galaxyp
parents:
diff
changeset
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18 <referenceableParamGroup id="spectrum1"> |
cbc7e53518ce
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cardinal commit f127be2141cf22e269c85282d226eb16fe14a9c1
galaxyp
parents:
diff
changeset
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19 <cvParam cvRef="MS" accession="MS:1000579" name="MS1 spectrum" value="" /> |
cbc7e53518ce
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cardinal commit f127be2141cf22e269c85282d226eb16fe14a9c1
galaxyp
parents:
diff
changeset
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20 <cvParam cvRef="MS" accession="MS:1000511" name="ms level" value="0" /> |
cbc7e53518ce
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cardinal commit f127be2141cf22e269c85282d226eb16fe14a9c1
galaxyp
parents:
diff
changeset
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21 <cvParam cvRef="MS" accession="MS:1000128" name="profile spectrum" value="" /> |
cbc7e53518ce
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cardinal commit f127be2141cf22e269c85282d226eb16fe14a9c1
galaxyp
parents:
diff
changeset
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22 </referenceableParamGroup> |
cbc7e53518ce
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cardinal commit f127be2141cf22e269c85282d226eb16fe14a9c1
galaxyp
parents:
diff
changeset
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23 <referenceableParamGroup id="scan1"> |
cbc7e53518ce
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cardinal commit f127be2141cf22e269c85282d226eb16fe14a9c1
galaxyp
parents:
diff
changeset
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24 <cvParam cvRef="MS" accession="MS:1000093" name="increasing m/z scan" value="" /> |
cbc7e53518ce
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cardinal commit f127be2141cf22e269c85282d226eb16fe14a9c1
galaxyp
parents:
diff
changeset
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25 <cvParam cvRef="MS" accession="MS:1000095" name="linear" value="" /> |
cbc7e53518ce
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cardinal commit f127be2141cf22e269c85282d226eb16fe14a9c1
galaxyp
parents:
diff
changeset
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26 </referenceableParamGroup> |
cbc7e53518ce
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cardinal commit f127be2141cf22e269c85282d226eb16fe14a9c1
galaxyp
parents:
diff
changeset
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27 <referenceableParamGroup id="mzArray"> |
cbc7e53518ce
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cardinal commit f127be2141cf22e269c85282d226eb16fe14a9c1
galaxyp
parents:
diff
changeset
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28 <cvParam cvRef="MS" accession="MS:1000576" name="no compression" value="" /> |
cbc7e53518ce
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cardinal commit f127be2141cf22e269c85282d226eb16fe14a9c1
galaxyp
parents:
diff
changeset
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29 <cvParam cvRef="MS" accession="MS:1000514" name="m/z array" value="" unitCvRef="MS" unitAccession="MS:1000040" unitName="m/z" /> |
cbc7e53518ce
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cardinal commit f127be2141cf22e269c85282d226eb16fe14a9c1
galaxyp
parents:
diff
changeset
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30 <cvParam cvRef="IMS" accession="IMS:1000101" name="external data" value="true" /> |
cbc7e53518ce
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cardinal commit f127be2141cf22e269c85282d226eb16fe14a9c1
galaxyp
parents:
diff
changeset
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31 <cvParam cvRef="MS" accession="MS:1000521" name="32-bit float" value="32-bit float" /> |
cbc7e53518ce
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cardinal commit f127be2141cf22e269c85282d226eb16fe14a9c1
galaxyp
parents:
diff
changeset
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32 </referenceableParamGroup> |
cbc7e53518ce
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cardinal commit f127be2141cf22e269c85282d226eb16fe14a9c1
galaxyp
parents:
diff
changeset
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33 <referenceableParamGroup id="intensityArray"> |
cbc7e53518ce
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cardinal commit f127be2141cf22e269c85282d226eb16fe14a9c1
galaxyp
parents:
diff
changeset
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34 <cvParam cvRef="MS" accession="MS:1000576" name="no compression" value="" /> |
cbc7e53518ce
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cardinal commit f127be2141cf22e269c85282d226eb16fe14a9c1
galaxyp
parents:
diff
changeset
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35 <cvParam cvRef="MS" accession="MS:1000515" name="intensity array" value="" unitCvRef="MS" unitAccession="MS:1000131" unitName="number of counts" /> |
cbc7e53518ce
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cardinal commit f127be2141cf22e269c85282d226eb16fe14a9c1
galaxyp
parents:
diff
changeset
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36 <cvParam cvRef="IMS" accession="IMS:1000101" name="external data" value="true" /> |
cbc7e53518ce
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cardinal commit f127be2141cf22e269c85282d226eb16fe14a9c1
galaxyp
parents:
diff
changeset
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37 <cvParam cvRef="MS" accession="MS:1000521" name="32-bit float" value="32-bit float" /> |
cbc7e53518ce
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cardinal commit f127be2141cf22e269c85282d226eb16fe14a9c1
galaxyp
parents:
diff
changeset
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38 </referenceableParamGroup> |
cbc7e53518ce
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cardinal commit f127be2141cf22e269c85282d226eb16fe14a9c1
galaxyp
parents:
diff
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39 </referenceableParamGroupList> |
cbc7e53518ce
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cardinal commit f127be2141cf22e269c85282d226eb16fe14a9c1
galaxyp
parents:
diff
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40 <sampleList count="1"> |
cbc7e53518ce
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cardinal commit f127be2141cf22e269c85282d226eb16fe14a9c1
galaxyp
parents:
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41 <sample id="sample1" name="Sample1"> |
cbc7e53518ce
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cardinal commit f127be2141cf22e269c85282d226eb16fe14a9c1
galaxyp
parents:
diff
changeset
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42 <cvParam cvRef="MS" accession="MS:1000001" name="sample number" value="1" /> |
cbc7e53518ce
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cardinal commit f127be2141cf22e269c85282d226eb16fe14a9c1
galaxyp
parents:
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43 </sample> |
cbc7e53518ce
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cardinal commit f127be2141cf22e269c85282d226eb16fe14a9c1
galaxyp
parents:
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44 </sampleList> |
cbc7e53518ce
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cardinal commit f127be2141cf22e269c85282d226eb16fe14a9c1
galaxyp
parents:
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45 <softwareList count="1"> |
cbc7e53518ce
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cardinal commit f127be2141cf22e269c85282d226eb16fe14a9c1
galaxyp
parents:
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46 <software id="Cardinal" version="1.12.1"> |
cbc7e53518ce
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cardinal commit f127be2141cf22e269c85282d226eb16fe14a9c1
galaxyp
parents:
diff
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47 <cvParam cvRef="MS" accession="MS:1000799" name="custom unreleased software tool" value="" /> |
cbc7e53518ce
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cardinal commit f127be2141cf22e269c85282d226eb16fe14a9c1
galaxyp
parents:
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48 </software> |
cbc7e53518ce
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cardinal commit f127be2141cf22e269c85282d226eb16fe14a9c1
galaxyp
parents:
diff
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49 </softwareList> |
cbc7e53518ce
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cardinal commit f127be2141cf22e269c85282d226eb16fe14a9c1
galaxyp
parents:
diff
changeset
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50 <scanSettingsList count="1"> |
cbc7e53518ce
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cardinal commit f127be2141cf22e269c85282d226eb16fe14a9c1
galaxyp
parents:
diff
changeset
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51 <scanSettings id="scansettings1"> |
cbc7e53518ce
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cardinal commit f127be2141cf22e269c85282d226eb16fe14a9c1
galaxyp
parents:
diff
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52 <cvParam cvRef="IMS" accession="IMS:1000042" name="max count of pixel x" value="3" /> |
cbc7e53518ce
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cardinal commit f127be2141cf22e269c85282d226eb16fe14a9c1
galaxyp
parents:
diff
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53 <cvParam cvRef="IMS" accession="IMS:1000043" name="max count of pixel y" value="2" /> |
cbc7e53518ce
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cardinal commit f127be2141cf22e269c85282d226eb16fe14a9c1
galaxyp
parents:
diff
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54 </scanSettings> |
cbc7e53518ce
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cardinal commit f127be2141cf22e269c85282d226eb16fe14a9c1
galaxyp
parents:
diff
changeset
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55 </scanSettingsList> |
cbc7e53518ce
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cardinal commit f127be2141cf22e269c85282d226eb16fe14a9c1
galaxyp
parents:
diff
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56 <instrumentConfigurationList count="1"> |
cbc7e53518ce
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cardinal commit f127be2141cf22e269c85282d226eb16fe14a9c1
galaxyp
parents:
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57 <instrumentConfiguration id="IC1" /> |
cbc7e53518ce
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cardinal commit f127be2141cf22e269c85282d226eb16fe14a9c1
galaxyp
parents:
diff
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58 </instrumentConfigurationList> |
cbc7e53518ce
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cardinal commit f127be2141cf22e269c85282d226eb16fe14a9c1
galaxyp
parents:
diff
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59 <dataProcessingList count="1"> |
cbc7e53518ce
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cardinal commit f127be2141cf22e269c85282d226eb16fe14a9c1
galaxyp
parents:
diff
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60 <dataProcessing id="CardinalWriteImzML"> |
cbc7e53518ce
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cardinal commit f127be2141cf22e269c85282d226eb16fe14a9c1
galaxyp
parents:
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61 <processingMethod order="1" softwareRef="Cardinal"> |
cbc7e53518ce
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cardinal commit f127be2141cf22e269c85282d226eb16fe14a9c1
galaxyp
parents:
diff
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62 <cvParam cvRef="MS" accession="MS:1000544" name="Conversion to mzML" value="" /> |
cbc7e53518ce
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cardinal commit f127be2141cf22e269c85282d226eb16fe14a9c1
galaxyp
parents:
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63 </processingMethod> |
cbc7e53518ce
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cardinal commit f127be2141cf22e269c85282d226eb16fe14a9c1
galaxyp
parents:
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64 </dataProcessing> |
cbc7e53518ce
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cardinal commit f127be2141cf22e269c85282d226eb16fe14a9c1
galaxyp
parents:
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65 </dataProcessingList> |
cbc7e53518ce
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cardinal commit f127be2141cf22e269c85282d226eb16fe14a9c1
galaxyp
parents:
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66 <run defaultInstrumentConfigurationRef="IC1" id="Experiment01" sampleRef="sample1"> |
cbc7e53518ce
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cardinal commit f127be2141cf22e269c85282d226eb16fe14a9c1
galaxyp
parents:
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67 <spectrumList count="3" defaultDataProcessingRef="CardinalWriteImzML"> |
cbc7e53518ce
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cardinal commit f127be2141cf22e269c85282d226eb16fe14a9c1
galaxyp
parents:
diff
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68 <spectrum id="Spectrum=1" defaultArrayLength="0" index="1"> |
cbc7e53518ce
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cardinal commit f127be2141cf22e269c85282d226eb16fe14a9c1
galaxyp
parents:
diff
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69 <referenceableParamGroupRef ref="spectrum1" /> |
cbc7e53518ce
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cardinal commit f127be2141cf22e269c85282d226eb16fe14a9c1
galaxyp
parents:
diff
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70 <scanList count="1"> |
cbc7e53518ce
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cardinal commit f127be2141cf22e269c85282d226eb16fe14a9c1
galaxyp
parents:
diff
changeset
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71 <cvParam cvRef="MS" accession="MS:1000795" name="no combination" value="" /> |
cbc7e53518ce
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cardinal commit f127be2141cf22e269c85282d226eb16fe14a9c1
galaxyp
parents:
diff
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72 <scan instrumentConfigurationRef="IC1"> |
cbc7e53518ce
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cardinal commit f127be2141cf22e269c85282d226eb16fe14a9c1
galaxyp
parents:
diff
changeset
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73 <referenceableParamGroupRef ref="scan1" /> |
cbc7e53518ce
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cardinal commit f127be2141cf22e269c85282d226eb16fe14a9c1
galaxyp
parents:
diff
changeset
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74 <cvParam cvRef="IMS" accession="IMS:1000050" name="position x" value="1" /> |
cbc7e53518ce
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cardinal commit f127be2141cf22e269c85282d226eb16fe14a9c1
galaxyp
parents:
diff
changeset
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75 <cvParam cvRef="IMS" accession="IMS:1000051" name="position y" value="2" /> |
cbc7e53518ce
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cardinal commit f127be2141cf22e269c85282d226eb16fe14a9c1
galaxyp
parents:
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76 </scan> |
cbc7e53518ce
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cardinal commit f127be2141cf22e269c85282d226eb16fe14a9c1
galaxyp
parents:
diff
changeset
|
77 </scanList> |
cbc7e53518ce
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cardinal commit f127be2141cf22e269c85282d226eb16fe14a9c1
galaxyp
parents:
diff
changeset
|
78 <binaryDataArrayList count="2"> |
cbc7e53518ce
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cardinal commit f127be2141cf22e269c85282d226eb16fe14a9c1
galaxyp
parents:
diff
changeset
|
79 <binaryDataArray encodedLength="0"> |
cbc7e53518ce
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cardinal commit f127be2141cf22e269c85282d226eb16fe14a9c1
galaxyp
parents:
diff
changeset
|
80 <referenceableParamGroupRef ref="mzArray" /> |
cbc7e53518ce
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cardinal commit f127be2141cf22e269c85282d226eb16fe14a9c1
galaxyp
parents:
diff
changeset
|
81 <cvParam cvRef="IMS" accession="IMS:1000102" name="external offset" value="16" /> |
cbc7e53518ce
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cardinal commit f127be2141cf22e269c85282d226eb16fe14a9c1
galaxyp
parents:
diff
changeset
|
82 <cvParam cvRef="IMS" accession="IMS:1000103" name="external array length" value="600" /> |
cbc7e53518ce
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cardinal commit f127be2141cf22e269c85282d226eb16fe14a9c1
galaxyp
parents:
diff
changeset
|
83 <cvParam cvRef="IMS" accession="IMS:1000104" name="external encoded length" value="2400" /> |
cbc7e53518ce
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cardinal commit f127be2141cf22e269c85282d226eb16fe14a9c1
galaxyp
parents:
diff
changeset
|
84 <binary /> |
cbc7e53518ce
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cardinal commit f127be2141cf22e269c85282d226eb16fe14a9c1
galaxyp
parents:
diff
changeset
|
85 </binaryDataArray> |
cbc7e53518ce
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cardinal commit f127be2141cf22e269c85282d226eb16fe14a9c1
galaxyp
parents:
diff
changeset
|
86 <binaryDataArray encodedLength="0"> |
cbc7e53518ce
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cardinal commit f127be2141cf22e269c85282d226eb16fe14a9c1
galaxyp
parents:
diff
changeset
|
87 <referenceableParamGroupRef ref="intensityArray" /> |
cbc7e53518ce
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cardinal commit f127be2141cf22e269c85282d226eb16fe14a9c1
galaxyp
parents:
diff
changeset
|
88 <cvParam cvRef="IMS" accession="IMS:1000102" name="external offset" value="2416" /> |
cbc7e53518ce
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cardinal commit f127be2141cf22e269c85282d226eb16fe14a9c1
galaxyp
parents:
diff
changeset
|
89 <cvParam cvRef="IMS" accession="IMS:1000103" name="external array length" value="600" /> |
cbc7e53518ce
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cardinal commit f127be2141cf22e269c85282d226eb16fe14a9c1
galaxyp
parents:
diff
changeset
|
90 <cvParam cvRef="IMS" accession="IMS:1000104" name="external encoded length" value="2400" /> |
cbc7e53518ce
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cardinal commit f127be2141cf22e269c85282d226eb16fe14a9c1
galaxyp
parents:
diff
changeset
|
91 <binary /> |
cbc7e53518ce
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cardinal commit f127be2141cf22e269c85282d226eb16fe14a9c1
galaxyp
parents:
diff
changeset
|
92 </binaryDataArray> |
cbc7e53518ce
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cardinal commit f127be2141cf22e269c85282d226eb16fe14a9c1
galaxyp
parents:
diff
changeset
|
93 </binaryDataArrayList> |
cbc7e53518ce
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cardinal commit f127be2141cf22e269c85282d226eb16fe14a9c1
galaxyp
parents:
diff
changeset
|
94 </spectrum> |
cbc7e53518ce
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cardinal commit f127be2141cf22e269c85282d226eb16fe14a9c1
galaxyp
parents:
diff
changeset
|
95 <spectrum id="Spectrum=2" defaultArrayLength="0" index="2"> |
cbc7e53518ce
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cardinal commit f127be2141cf22e269c85282d226eb16fe14a9c1
galaxyp
parents:
diff
changeset
|
96 <referenceableParamGroupRef ref="spectrum1" /> |
cbc7e53518ce
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cardinal commit f127be2141cf22e269c85282d226eb16fe14a9c1
galaxyp
parents:
diff
changeset
|
97 <scanList count="1"> |
cbc7e53518ce
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cardinal commit f127be2141cf22e269c85282d226eb16fe14a9c1
galaxyp
parents:
diff
changeset
|
98 <cvParam cvRef="MS" accession="MS:1000795" name="no combination" value="" /> |
cbc7e53518ce
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cardinal commit f127be2141cf22e269c85282d226eb16fe14a9c1
galaxyp
parents:
diff
changeset
|
99 <scan instrumentConfigurationRef="IC1"> |
cbc7e53518ce
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cardinal commit f127be2141cf22e269c85282d226eb16fe14a9c1
galaxyp
parents:
diff
changeset
|
100 <referenceableParamGroupRef ref="scan1" /> |
cbc7e53518ce
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cardinal commit f127be2141cf22e269c85282d226eb16fe14a9c1
galaxyp
parents:
diff
changeset
|
101 <cvParam cvRef="IMS" accession="IMS:1000050" name="position x" value="2" /> |
cbc7e53518ce
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cardinal commit f127be2141cf22e269c85282d226eb16fe14a9c1
galaxyp
parents:
diff
changeset
|
102 <cvParam cvRef="IMS" accession="IMS:1000051" name="position y" value="2" /> |
cbc7e53518ce
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cardinal commit f127be2141cf22e269c85282d226eb16fe14a9c1
galaxyp
parents:
diff
changeset
|
103 </scan> |
cbc7e53518ce
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cardinal commit f127be2141cf22e269c85282d226eb16fe14a9c1
galaxyp
parents:
diff
changeset
|
104 </scanList> |
cbc7e53518ce
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cardinal commit f127be2141cf22e269c85282d226eb16fe14a9c1
galaxyp
parents:
diff
changeset
|
105 <binaryDataArrayList count="2"> |
cbc7e53518ce
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cardinal commit f127be2141cf22e269c85282d226eb16fe14a9c1
galaxyp
parents:
diff
changeset
|
106 <binaryDataArray encodedLength="0"> |
cbc7e53518ce
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cardinal commit f127be2141cf22e269c85282d226eb16fe14a9c1
galaxyp
parents:
diff
changeset
|
107 <referenceableParamGroupRef ref="mzArray" /> |
cbc7e53518ce
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cardinal commit f127be2141cf22e269c85282d226eb16fe14a9c1
galaxyp
parents:
diff
changeset
|
108 <cvParam cvRef="IMS" accession="IMS:1000102" name="external offset" value="16" /> |
cbc7e53518ce
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cardinal commit f127be2141cf22e269c85282d226eb16fe14a9c1
galaxyp
parents:
diff
changeset
|
109 <cvParam cvRef="IMS" accession="IMS:1000103" name="external array length" value="600" /> |
cbc7e53518ce
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cardinal commit f127be2141cf22e269c85282d226eb16fe14a9c1
galaxyp
parents:
diff
changeset
|
110 <cvParam cvRef="IMS" accession="IMS:1000104" name="external encoded length" value="2400" /> |
cbc7e53518ce
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cardinal commit f127be2141cf22e269c85282d226eb16fe14a9c1
galaxyp
parents:
diff
changeset
|
111 <binary /> |
cbc7e53518ce
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cardinal commit f127be2141cf22e269c85282d226eb16fe14a9c1
galaxyp
parents:
diff
changeset
|
112 </binaryDataArray> |
cbc7e53518ce
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cardinal commit f127be2141cf22e269c85282d226eb16fe14a9c1
galaxyp
parents:
diff
changeset
|
113 <binaryDataArray encodedLength="0"> |
cbc7e53518ce
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cardinal commit f127be2141cf22e269c85282d226eb16fe14a9c1
galaxyp
parents:
diff
changeset
|
114 <referenceableParamGroupRef ref="intensityArray" /> |
cbc7e53518ce
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cardinal commit f127be2141cf22e269c85282d226eb16fe14a9c1
galaxyp
parents:
diff
changeset
|
115 <cvParam cvRef="IMS" accession="IMS:1000102" name="external offset" value="4816" /> |
cbc7e53518ce
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cardinal commit f127be2141cf22e269c85282d226eb16fe14a9c1
galaxyp
parents:
diff
changeset
|
116 <cvParam cvRef="IMS" accession="IMS:1000103" name="external array length" value="600" /> |
cbc7e53518ce
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cardinal commit f127be2141cf22e269c85282d226eb16fe14a9c1
galaxyp
parents:
diff
changeset
|
117 <cvParam cvRef="IMS" accession="IMS:1000104" name="external encoded length" value="2400" /> |
cbc7e53518ce
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cardinal commit f127be2141cf22e269c85282d226eb16fe14a9c1
galaxyp
parents:
diff
changeset
|
118 <binary /> |
cbc7e53518ce
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cardinal commit f127be2141cf22e269c85282d226eb16fe14a9c1
galaxyp
parents:
diff
changeset
|
119 </binaryDataArray> |
cbc7e53518ce
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cardinal commit f127be2141cf22e269c85282d226eb16fe14a9c1
galaxyp
parents:
diff
changeset
|
120 </binaryDataArrayList> |
cbc7e53518ce
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cardinal commit f127be2141cf22e269c85282d226eb16fe14a9c1
galaxyp
parents:
diff
changeset
|
121 </spectrum> |
cbc7e53518ce
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cardinal commit f127be2141cf22e269c85282d226eb16fe14a9c1
galaxyp
parents:
diff
changeset
|
122 <spectrum id="Spectrum=3" defaultArrayLength="0" index="3"> |
cbc7e53518ce
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cardinal commit f127be2141cf22e269c85282d226eb16fe14a9c1
galaxyp
parents:
diff
changeset
|
123 <referenceableParamGroupRef ref="spectrum1" /> |
cbc7e53518ce
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cardinal commit f127be2141cf22e269c85282d226eb16fe14a9c1
galaxyp
parents:
diff
changeset
|
124 <scanList count="1"> |
cbc7e53518ce
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cardinal commit f127be2141cf22e269c85282d226eb16fe14a9c1
galaxyp
parents:
diff
changeset
|
125 <cvParam cvRef="MS" accession="MS:1000795" name="no combination" value="" /> |
cbc7e53518ce
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cardinal commit f127be2141cf22e269c85282d226eb16fe14a9c1
galaxyp
parents:
diff
changeset
|
126 <scan instrumentConfigurationRef="IC1"> |
cbc7e53518ce
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cardinal commit f127be2141cf22e269c85282d226eb16fe14a9c1
galaxyp
parents:
diff
changeset
|
127 <referenceableParamGroupRef ref="scan1" /> |
cbc7e53518ce
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cardinal commit f127be2141cf22e269c85282d226eb16fe14a9c1
galaxyp
parents:
diff
changeset
|
128 <cvParam cvRef="IMS" accession="IMS:1000050" name="position x" value="3" /> |
cbc7e53518ce
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cardinal commit f127be2141cf22e269c85282d226eb16fe14a9c1
galaxyp
parents:
diff
changeset
|
129 <cvParam cvRef="IMS" accession="IMS:1000051" name="position y" value="2" /> |
cbc7e53518ce
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cardinal commit f127be2141cf22e269c85282d226eb16fe14a9c1
galaxyp
parents:
diff
changeset
|
130 </scan> |
cbc7e53518ce
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cardinal commit f127be2141cf22e269c85282d226eb16fe14a9c1
galaxyp
parents:
diff
changeset
|
131 </scanList> |
cbc7e53518ce
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cardinal commit f127be2141cf22e269c85282d226eb16fe14a9c1
galaxyp
parents:
diff
changeset
|
132 <binaryDataArrayList count="2"> |
cbc7e53518ce
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cardinal commit f127be2141cf22e269c85282d226eb16fe14a9c1
galaxyp
parents:
diff
changeset
|
133 <binaryDataArray encodedLength="0"> |
cbc7e53518ce
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cardinal commit f127be2141cf22e269c85282d226eb16fe14a9c1
galaxyp
parents:
diff
changeset
|
134 <referenceableParamGroupRef ref="mzArray" /> |
cbc7e53518ce
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cardinal commit f127be2141cf22e269c85282d226eb16fe14a9c1
galaxyp
parents:
diff
changeset
|
135 <cvParam cvRef="IMS" accession="IMS:1000102" name="external offset" value="16" /> |
cbc7e53518ce
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cardinal commit f127be2141cf22e269c85282d226eb16fe14a9c1
galaxyp
parents:
diff
changeset
|
136 <cvParam cvRef="IMS" accession="IMS:1000103" name="external array length" value="600" /> |
cbc7e53518ce
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cardinal commit f127be2141cf22e269c85282d226eb16fe14a9c1
galaxyp
parents:
diff
changeset
|
137 <cvParam cvRef="IMS" accession="IMS:1000104" name="external encoded length" value="2400" /> |
cbc7e53518ce
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cardinal commit f127be2141cf22e269c85282d226eb16fe14a9c1
galaxyp
parents:
diff
changeset
|
138 <binary /> |
cbc7e53518ce
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cardinal commit f127be2141cf22e269c85282d226eb16fe14a9c1
galaxyp
parents:
diff
changeset
|
139 </binaryDataArray> |
cbc7e53518ce
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cardinal commit f127be2141cf22e269c85282d226eb16fe14a9c1
galaxyp
parents:
diff
changeset
|
140 <binaryDataArray encodedLength="0"> |
cbc7e53518ce
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cardinal commit f127be2141cf22e269c85282d226eb16fe14a9c1
galaxyp
parents:
diff
changeset
|
141 <referenceableParamGroupRef ref="intensityArray" /> |
cbc7e53518ce
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cardinal commit f127be2141cf22e269c85282d226eb16fe14a9c1
galaxyp
parents:
diff
changeset
|
142 <cvParam cvRef="IMS" accession="IMS:1000102" name="external offset" value="7216" /> |
cbc7e53518ce
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cardinal commit f127be2141cf22e269c85282d226eb16fe14a9c1
galaxyp
parents:
diff
changeset
|
143 <cvParam cvRef="IMS" accession="IMS:1000103" name="external array length" value="600" /> |
cbc7e53518ce
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cardinal commit f127be2141cf22e269c85282d226eb16fe14a9c1
galaxyp
parents:
diff
changeset
|
144 <cvParam cvRef="IMS" accession="IMS:1000104" name="external encoded length" value="2400" /> |
cbc7e53518ce
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cardinal commit f127be2141cf22e269c85282d226eb16fe14a9c1
galaxyp
parents:
diff
changeset
|
145 <binary /> |
cbc7e53518ce
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cardinal commit f127be2141cf22e269c85282d226eb16fe14a9c1
galaxyp
parents:
diff
changeset
|
146 </binaryDataArray> |
cbc7e53518ce
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cardinal commit f127be2141cf22e269c85282d226eb16fe14a9c1
galaxyp
parents:
diff
changeset
|
147 </binaryDataArrayList> |
cbc7e53518ce
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cardinal commit f127be2141cf22e269c85282d226eb16fe14a9c1
galaxyp
parents:
diff
changeset
|
148 </spectrum> |
cbc7e53518ce
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cardinal commit f127be2141cf22e269c85282d226eb16fe14a9c1
galaxyp
parents:
diff
changeset
|
149 </spectrumList> |
cbc7e53518ce
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cardinal commit f127be2141cf22e269c85282d226eb16fe14a9c1
galaxyp
parents:
diff
changeset
|
150 </run> |
cbc7e53518ce
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cardinal commit f127be2141cf22e269c85282d226eb16fe14a9c1
galaxyp
parents:
diff
changeset
|
151 </mzML> |