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changeset 12:3f8fe8747f22 draft

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"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cardinal commit 39bd480e8813fa7a96b640150365577a69885d17-dirty"
author galaxyp
date Sun, 29 Nov 2020 23:19:21 +0000
parents 2308bd817e3e
children b18329a8ac14
files test-data/Heatmaps_LM8_file16.pdf test-data/Heatmaps_analyze75.pdf test-data/Heatmaps_imzml.pdf test-data/Heatmaps_processed.pdf test-data/Heatmaps_rdata.pdf test-data/centroids_proc.pdf test-data/preprocessing_results1.ibd test-data/preprocessing_results1.imzml test-data/preprocessing_results1.imzml.txt test-data/preprocessing_results1.pdf test-data/preprocessing_results2.ibd test-data/preprocessing_results2.imzml test-data/preprocessing_results2.imzml.txt test-data/preprocessing_results2.pdf test-data/preprocessing_results3.ibd test-data/preprocessing_results3.imzml test-data/preprocessing_results3.imzml.txt test-data/preprocessing_results3.pdf
diffstat 18 files changed, 111 insertions(+), 111 deletions(-) [+]
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Binary file test-data/Heatmaps_LM8_file16.pdf has changed
Binary file test-data/Heatmaps_analyze75.pdf has changed
Binary file test-data/Heatmaps_imzml.pdf has changed
Binary file test-data/Heatmaps_processed.pdf has changed
Binary file test-data/Heatmaps_rdata.pdf has changed
Binary file test-data/centroids_proc.pdf has changed
Binary file test-data/preprocessing_results1.ibd has changed
--- a/test-data/preprocessing_results1.imzml	Tue Oct 06 07:44:06 2020 +0000
+++ b/test-data/preprocessing_results1.imzml	Sun Nov 29 23:19:21 2020 +0000
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--- a/test-data/preprocessing_results1.imzml.txt	Tue Oct 06 07:44:06 2020 +0000
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+						<cvParam cvRef="IMS" accession="IMS:1000103" name="external array length" value="36" />
+						<cvParam cvRef="IMS" accession="IMS:1000104" name="external encoded length" value="144" />
 						<binary />
 					</binaryDataArray>
 				</binaryDataArrayList>
@@ -172,16 +172,16 @@
 				<binaryDataArrayList count="2">
 					<binaryDataArray encodedLength="0">
 						<referenceableParamGroupRef ref="mzArray" />
-						<cvParam cvRef="IMS" accession="IMS:1000102" name="external offset" value="328" />
-						<cvParam cvRef="IMS" accession="IMS:1000103" name="external array length" value="21" />
-						<cvParam cvRef="IMS" accession="IMS:1000104" name="external encoded length" value="84" />
+						<cvParam cvRef="IMS" accession="IMS:1000102" name="external offset" value="16" />
+						<cvParam cvRef="IMS" accession="IMS:1000103" name="external array length" value="36" />
+						<cvParam cvRef="IMS" accession="IMS:1000104" name="external encoded length" value="144" />
 						<binary />
 					</binaryDataArray>
 					<binaryDataArray encodedLength="0">
 						<referenceableParamGroupRef ref="intensityArray" />
-						<cvParam cvRef="IMS" accession="IMS:1000102" name="external offset" value="412" />
-						<cvParam cvRef="IMS" accession="IMS:1000103" name="external array length" value="21" />
-						<cvParam cvRef="IMS" accession="IMS:1000104" name="external encoded length" value="84" />
+						<cvParam cvRef="IMS" accession="IMS:1000102" name="external offset" value="592" />
+						<cvParam cvRef="IMS" accession="IMS:1000103" name="external array length" value="36" />
+						<cvParam cvRef="IMS" accession="IMS:1000104" name="external encoded length" value="144" />
 						<binary />
 					</binaryDataArray>
 				</binaryDataArrayList>
@@ -201,16 +201,16 @@
 				<binaryDataArrayList count="2">
 					<binaryDataArray encodedLength="0">
 						<referenceableParamGroupRef ref="mzArray" />
-						<cvParam cvRef="IMS" accession="IMS:1000102" name="external offset" value="496" />
-						<cvParam cvRef="IMS" accession="IMS:1000103" name="external array length" value="4" />
-						<cvParam cvRef="IMS" accession="IMS:1000104" name="external encoded length" value="16" />
+						<cvParam cvRef="IMS" accession="IMS:1000102" name="external offset" value="16" />
+						<cvParam cvRef="IMS" accession="IMS:1000103" name="external array length" value="36" />
+						<cvParam cvRef="IMS" accession="IMS:1000104" name="external encoded length" value="144" />
 						<binary />
 					</binaryDataArray>
 					<binaryDataArray encodedLength="0">
 						<referenceableParamGroupRef ref="intensityArray" />
-						<cvParam cvRef="IMS" accession="IMS:1000102" name="external offset" value="512" />
-						<cvParam cvRef="IMS" accession="IMS:1000103" name="external array length" value="4" />
-						<cvParam cvRef="IMS" accession="IMS:1000104" name="external encoded length" value="16" />
+						<cvParam cvRef="IMS" accession="IMS:1000102" name="external offset" value="736" />
+						<cvParam cvRef="IMS" accession="IMS:1000103" name="external array length" value="36" />
+						<cvParam cvRef="IMS" accession="IMS:1000104" name="external encoded length" value="144" />
 						<binary />
 					</binaryDataArray>
 				</binaryDataArrayList>
@@ -230,16 +230,16 @@
 				<binaryDataArrayList count="2">
 					<binaryDataArray encodedLength="0">
 						<referenceableParamGroupRef ref="mzArray" />
-						<cvParam cvRef="IMS" accession="IMS:1000102" name="external offset" value="528" />
-						<cvParam cvRef="IMS" accession="IMS:1000103" name="external array length" value="18" />
-						<cvParam cvRef="IMS" accession="IMS:1000104" name="external encoded length" value="72" />
+						<cvParam cvRef="IMS" accession="IMS:1000102" name="external offset" value="16" />
+						<cvParam cvRef="IMS" accession="IMS:1000103" name="external array length" value="36" />
+						<cvParam cvRef="IMS" accession="IMS:1000104" name="external encoded length" value="144" />
 						<binary />
 					</binaryDataArray>
 					<binaryDataArray encodedLength="0">
 						<referenceableParamGroupRef ref="intensityArray" />
-						<cvParam cvRef="IMS" accession="IMS:1000102" name="external offset" value="600" />
-						<cvParam cvRef="IMS" accession="IMS:1000103" name="external array length" value="18" />
-						<cvParam cvRef="IMS" accession="IMS:1000104" name="external encoded length" value="72" />
+						<cvParam cvRef="IMS" accession="IMS:1000102" name="external offset" value="880" />
+						<cvParam cvRef="IMS" accession="IMS:1000103" name="external array length" value="36" />
+						<cvParam cvRef="IMS" accession="IMS:1000104" name="external encoded length" value="144" />
 						<binary />
 					</binaryDataArray>
 				</binaryDataArrayList>
@@ -259,16 +259,16 @@
 				<binaryDataArrayList count="2">
 					<binaryDataArray encodedLength="0">
 						<referenceableParamGroupRef ref="mzArray" />
-						<cvParam cvRef="IMS" accession="IMS:1000102" name="external offset" value="672" />
-						<cvParam cvRef="IMS" accession="IMS:1000103" name="external array length" value="17" />
-						<cvParam cvRef="IMS" accession="IMS:1000104" name="external encoded length" value="68" />
+						<cvParam cvRef="IMS" accession="IMS:1000102" name="external offset" value="16" />
+						<cvParam cvRef="IMS" accession="IMS:1000103" name="external array length" value="36" />
+						<cvParam cvRef="IMS" accession="IMS:1000104" name="external encoded length" value="144" />
 						<binary />
 					</binaryDataArray>
 					<binaryDataArray encodedLength="0">
 						<referenceableParamGroupRef ref="intensityArray" />
-						<cvParam cvRef="IMS" accession="IMS:1000102" name="external offset" value="740" />
-						<cvParam cvRef="IMS" accession="IMS:1000103" name="external array length" value="17" />
-						<cvParam cvRef="IMS" accession="IMS:1000104" name="external encoded length" value="68" />
+						<cvParam cvRef="IMS" accession="IMS:1000102" name="external offset" value="1024" />
+						<cvParam cvRef="IMS" accession="IMS:1000103" name="external array length" value="36" />
+						<cvParam cvRef="IMS" accession="IMS:1000104" name="external encoded length" value="144" />
 						<binary />
 					</binaryDataArray>
 				</binaryDataArrayList>
@@ -288,16 +288,16 @@
 				<binaryDataArrayList count="2">
 					<binaryDataArray encodedLength="0">
 						<referenceableParamGroupRef ref="mzArray" />
-						<cvParam cvRef="IMS" accession="IMS:1000102" name="external offset" value="808" />
-						<cvParam cvRef="IMS" accession="IMS:1000103" name="external array length" value="8" />
-						<cvParam cvRef="IMS" accession="IMS:1000104" name="external encoded length" value="32" />
+						<cvParam cvRef="IMS" accession="IMS:1000102" name="external offset" value="16" />
+						<cvParam cvRef="IMS" accession="IMS:1000103" name="external array length" value="36" />
+						<cvParam cvRef="IMS" accession="IMS:1000104" name="external encoded length" value="144" />
 						<binary />
 					</binaryDataArray>
 					<binaryDataArray encodedLength="0">
 						<referenceableParamGroupRef ref="intensityArray" />
-						<cvParam cvRef="IMS" accession="IMS:1000102" name="external offset" value="840" />
-						<cvParam cvRef="IMS" accession="IMS:1000103" name="external array length" value="8" />
-						<cvParam cvRef="IMS" accession="IMS:1000104" name="external encoded length" value="32" />
+						<cvParam cvRef="IMS" accession="IMS:1000102" name="external offset" value="1168" />
+						<cvParam cvRef="IMS" accession="IMS:1000103" name="external array length" value="36" />
+						<cvParam cvRef="IMS" accession="IMS:1000104" name="external encoded length" value="144" />
 						<binary />
 					</binaryDataArray>
 				</binaryDataArrayList>
@@ -317,16 +317,16 @@
 				<binaryDataArrayList count="2">
 					<binaryDataArray encodedLength="0">
 						<referenceableParamGroupRef ref="mzArray" />
-						<cvParam cvRef="IMS" accession="IMS:1000102" name="external offset" value="872" />
-						<cvParam cvRef="IMS" accession="IMS:1000103" name="external array length" value="11" />
-						<cvParam cvRef="IMS" accession="IMS:1000104" name="external encoded length" value="44" />
+						<cvParam cvRef="IMS" accession="IMS:1000102" name="external offset" value="16" />
+						<cvParam cvRef="IMS" accession="IMS:1000103" name="external array length" value="36" />
+						<cvParam cvRef="IMS" accession="IMS:1000104" name="external encoded length" value="144" />
 						<binary />
 					</binaryDataArray>
 					<binaryDataArray encodedLength="0">
 						<referenceableParamGroupRef ref="intensityArray" />
-						<cvParam cvRef="IMS" accession="IMS:1000102" name="external offset" value="916" />
-						<cvParam cvRef="IMS" accession="IMS:1000103" name="external array length" value="11" />
-						<cvParam cvRef="IMS" accession="IMS:1000104" name="external encoded length" value="44" />
+						<cvParam cvRef="IMS" accession="IMS:1000102" name="external offset" value="1312" />
+						<cvParam cvRef="IMS" accession="IMS:1000103" name="external array length" value="36" />
+						<cvParam cvRef="IMS" accession="IMS:1000104" name="external encoded length" value="144" />
 						<binary />
 					</binaryDataArray>
 				</binaryDataArrayList>
--- a/test-data/preprocessing_results3.imzml.txt	Tue Oct 06 07:44:06 2020 +0000
+++ b/test-data/preprocessing_results3.imzml.txt	Sun Nov 29 23:19:21 2020 +0000
@@ -1,4 +1,4 @@
 imzML file:
 total 24
--rw-rw-r-- 1 meli meli   960 Oct  5 19:58 ibd
--rw-rw-r-- 1 meli meli 18112 Oct  5 19:58 imzml
+-rw-rw-r-- 1 meli meli  1456 Nov 29 18:04 ibd
+-rw-rw-r-- 1 meli meli 18133 Nov 29 18:04 imzml
Binary file test-data/preprocessing_results3.pdf has changed