comparison test-data/12_combined.imzml @ 7:392b2dfd261d draft

"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cardinal commit f986c51abe33c7f622d429a3c4a79ee24b33c1f3"
author galaxyp
date Thu, 23 Apr 2020 08:04:25 -0400
parents b41107d8fe89
children 7e18fcb92a6a
comparison
equal deleted inserted replaced
6:bb1ac6b47a6c 7:392b2dfd261d
7 </cvList> 7 </cvList>
8 <fileDescription> 8 <fileDescription>
9 <fileContent> 9 <fileContent>
10 <cvParam cvRef="MS" accession="MS:1000579" name="MS1 spectrum" value="" /> 10 <cvParam cvRef="MS" accession="MS:1000579" name="MS1 spectrum" value="" />
11 <cvParam cvRef="MS" accession="MS:1000128" name="profile spectrum" value="" /> 11 <cvParam cvRef="MS" accession="MS:1000128" name="profile spectrum" value="" />
12 <cvParam cvRef="IMS" accession="IMS:1000080" name="universally unique identifier" value="e9aca5c3-32c8-416b-a9e9-e40ba239ce32" /> 12 <cvParam cvRef="IMS" accession="IMS:1000080" name="universally unique identifier" value="57f26041-833d-4843-ba25-0037f2c35f51" />
13 <cvParam cvRef="IMS" accession="IMS:1000091" name="ibd SHA-1" value="c0c53177dc3a008c7a18ba10fe139ccaecc295a2" /> 13 <cvParam cvRef="IMS" accession="IMS:1000091" name="ibd SHA-1" value="c271b37214900da9960cd3bcb748cc5bc377cfec" />
14 <cvParam cvRef="IMS" accession="IMS:1000030" name="continuous" value="" /> 14 <cvParam cvRef="IMS" accession="IMS:1000030" name="continuous" value="" />
15 </fileContent> 15 </fileContent>
16 </fileDescription> 16 </fileDescription>
17 <referenceableParamGroupList count="4"> 17 <referenceableParamGroupList count="4">
18 <referenceableParamGroup id="spectrum1"> 18 <referenceableParamGroup id="spectrum1">
40 <sample id="sample1" name="Sample1"> 40 <sample id="sample1" name="Sample1">
41 <cvParam cvRef="MS" accession="MS:1000001" name="sample number" value="1" /> 41 <cvParam cvRef="MS" accession="MS:1000001" name="sample number" value="1" />
42 </sample> 42 </sample>
43 </sampleList> 43 </sampleList>
44 <softwareList count="1"> 44 <softwareList count="1">
45 <software id="Cardinal" version="2.2.6"> 45 <software id="Cardinal" version="2.4.0">
46 <cvParam cvRef="MS" accession="MS:1000799" name="custom unreleased software tool" value="" /> 46 <cvParam cvRef="MS" accession="MS:1000799" name="custom unreleased software tool" value="" />
47 </software> 47 </software>
48 </softwareList> 48 </softwareList>
49 <scanSettingsList count="1"> 49 <scanSettingsList count="1">
50 <scanSettings id="scansettings1"> 50 <scanSettings id="scansettings1">
76 <cvParam cvRef="MS" accession="MS:1000795" name="no combination" value="" /> 76 <cvParam cvRef="MS" accession="MS:1000795" name="no combination" value="" />
77 <scan instrumentConfigurationRef="IC1"> 77 <scan instrumentConfigurationRef="IC1">
78 <referenceableParamGroupRef ref="scan1" /> 78 <referenceableParamGroupRef ref="scan1" />
79 <cvParam cvRef="IMS" accession="IMS:1000050" name="position x" value="1" /> 79 <cvParam cvRef="IMS" accession="IMS:1000050" name="position x" value="1" />
80 <cvParam cvRef="IMS" accession="IMS:1000051" name="position y" value="1" /> 80 <cvParam cvRef="IMS" accession="IMS:1000051" name="position y" value="1" />
81 <userParam name="3DPositionX" value="1.000000" />
82 <userParam name="3DPositionY" value="1.000000" />
81 </scan> 83 </scan>
82 </scanList> 84 </scanList>
83 <binaryDataArrayList count="2"> 85 <binaryDataArrayList count="2">
84 <binaryDataArray encodedLength="0"> 86 <binaryDataArray encodedLength="0">
85 <referenceableParamGroupRef ref="mzArray" /> 87 <referenceableParamGroupRef ref="mzArray" />
103 <cvParam cvRef="MS" accession="MS:1000795" name="no combination" value="" /> 105 <cvParam cvRef="MS" accession="MS:1000795" name="no combination" value="" />
104 <scan instrumentConfigurationRef="IC1"> 106 <scan instrumentConfigurationRef="IC1">
105 <referenceableParamGroupRef ref="scan1" /> 107 <referenceableParamGroupRef ref="scan1" />
106 <cvParam cvRef="IMS" accession="IMS:1000050" name="position x" value="1" /> 108 <cvParam cvRef="IMS" accession="IMS:1000050" name="position x" value="1" />
107 <cvParam cvRef="IMS" accession="IMS:1000051" name="position y" value="2" /> 109 <cvParam cvRef="IMS" accession="IMS:1000051" name="position y" value="2" />
110 <userParam name="3DPositionX" value="1.000000" />
111 <userParam name="3DPositionY" value="2.000000" />
108 </scan> 112 </scan>
109 </scanList> 113 </scanList>
110 <binaryDataArrayList count="2"> 114 <binaryDataArrayList count="2">
111 <binaryDataArray encodedLength="0"> 115 <binaryDataArray encodedLength="0">
112 <referenceableParamGroupRef ref="mzArray" /> 116 <referenceableParamGroupRef ref="mzArray" />
130 <cvParam cvRef="MS" accession="MS:1000795" name="no combination" value="" /> 134 <cvParam cvRef="MS" accession="MS:1000795" name="no combination" value="" />
131 <scan instrumentConfigurationRef="IC1"> 135 <scan instrumentConfigurationRef="IC1">
132 <referenceableParamGroupRef ref="scan1" /> 136 <referenceableParamGroupRef ref="scan1" />
133 <cvParam cvRef="IMS" accession="IMS:1000050" name="position x" value="1" /> 137 <cvParam cvRef="IMS" accession="IMS:1000050" name="position x" value="1" />
134 <cvParam cvRef="IMS" accession="IMS:1000051" name="position y" value="3" /> 138 <cvParam cvRef="IMS" accession="IMS:1000051" name="position y" value="3" />
139 <userParam name="3DPositionX" value="1.000000" />
140 <userParam name="3DPositionY" value="3.000000" />
135 </scan> 141 </scan>
136 </scanList> 142 </scanList>
137 <binaryDataArrayList count="2"> 143 <binaryDataArrayList count="2">
138 <binaryDataArray encodedLength="0"> 144 <binaryDataArray encodedLength="0">
139 <referenceableParamGroupRef ref="mzArray" /> 145 <referenceableParamGroupRef ref="mzArray" />
157 <cvParam cvRef="MS" accession="MS:1000795" name="no combination" value="" /> 163 <cvParam cvRef="MS" accession="MS:1000795" name="no combination" value="" />
158 <scan instrumentConfigurationRef="IC1"> 164 <scan instrumentConfigurationRef="IC1">
159 <referenceableParamGroupRef ref="scan1" /> 165 <referenceableParamGroupRef ref="scan1" />
160 <cvParam cvRef="IMS" accession="IMS:1000050" name="position x" value="7" /> 166 <cvParam cvRef="IMS" accession="IMS:1000050" name="position x" value="7" />
161 <cvParam cvRef="IMS" accession="IMS:1000051" name="position y" value="1" /> 167 <cvParam cvRef="IMS" accession="IMS:1000051" name="position y" value="1" />
168 <userParam name="3DPositionX" value="7.000000" />
169 <userParam name="3DPositionY" value="1.000000" />
162 </scan> 170 </scan>
163 </scanList> 171 </scanList>
164 <binaryDataArrayList count="2"> 172 <binaryDataArrayList count="2">
165 <binaryDataArray encodedLength="0"> 173 <binaryDataArray encodedLength="0">
166 <referenceableParamGroupRef ref="mzArray" /> 174 <referenceableParamGroupRef ref="mzArray" />
184 <cvParam cvRef="MS" accession="MS:1000795" name="no combination" value="" /> 192 <cvParam cvRef="MS" accession="MS:1000795" name="no combination" value="" />
185 <scan instrumentConfigurationRef="IC1"> 193 <scan instrumentConfigurationRef="IC1">
186 <referenceableParamGroupRef ref="scan1" /> 194 <referenceableParamGroupRef ref="scan1" />
187 <cvParam cvRef="IMS" accession="IMS:1000050" name="position x" value="8" /> 195 <cvParam cvRef="IMS" accession="IMS:1000050" name="position x" value="8" />
188 <cvParam cvRef="IMS" accession="IMS:1000051" name="position y" value="1" /> 196 <cvParam cvRef="IMS" accession="IMS:1000051" name="position y" value="1" />
197 <userParam name="3DPositionX" value="8.000000" />
198 <userParam name="3DPositionY" value="1.000000" />
189 </scan> 199 </scan>
190 </scanList> 200 </scanList>
191 <binaryDataArrayList count="2"> 201 <binaryDataArrayList count="2">
192 <binaryDataArray encodedLength="0"> 202 <binaryDataArray encodedLength="0">
193 <referenceableParamGroupRef ref="mzArray" /> 203 <referenceableParamGroupRef ref="mzArray" />
211 <cvParam cvRef="MS" accession="MS:1000795" name="no combination" value="" /> 221 <cvParam cvRef="MS" accession="MS:1000795" name="no combination" value="" />
212 <scan instrumentConfigurationRef="IC1"> 222 <scan instrumentConfigurationRef="IC1">
213 <referenceableParamGroupRef ref="scan1" /> 223 <referenceableParamGroupRef ref="scan1" />
214 <cvParam cvRef="IMS" accession="IMS:1000050" name="position x" value="7" /> 224 <cvParam cvRef="IMS" accession="IMS:1000050" name="position x" value="7" />
215 <cvParam cvRef="IMS" accession="IMS:1000051" name="position y" value="2" /> 225 <cvParam cvRef="IMS" accession="IMS:1000051" name="position y" value="2" />
226 <userParam name="3DPositionX" value="7.000000" />
227 <userParam name="3DPositionY" value="2.000000" />
216 </scan> 228 </scan>
217 </scanList> 229 </scanList>
218 <binaryDataArrayList count="2"> 230 <binaryDataArrayList count="2">
219 <binaryDataArray encodedLength="0"> 231 <binaryDataArray encodedLength="0">
220 <referenceableParamGroupRef ref="mzArray" /> 232 <referenceableParamGroupRef ref="mzArray" />
238 <cvParam cvRef="MS" accession="MS:1000795" name="no combination" value="" /> 250 <cvParam cvRef="MS" accession="MS:1000795" name="no combination" value="" />
239 <scan instrumentConfigurationRef="IC1"> 251 <scan instrumentConfigurationRef="IC1">
240 <referenceableParamGroupRef ref="scan1" /> 252 <referenceableParamGroupRef ref="scan1" />
241 <cvParam cvRef="IMS" accession="IMS:1000050" name="position x" value="8" /> 253 <cvParam cvRef="IMS" accession="IMS:1000050" name="position x" value="8" />
242 <cvParam cvRef="IMS" accession="IMS:1000051" name="position y" value="2" /> 254 <cvParam cvRef="IMS" accession="IMS:1000051" name="position y" value="2" />
255 <userParam name="3DPositionX" value="8.000000" />
256 <userParam name="3DPositionY" value="2.000000" />
243 </scan> 257 </scan>
244 </scanList> 258 </scanList>
245 <binaryDataArrayList count="2"> 259 <binaryDataArrayList count="2">
246 <binaryDataArray encodedLength="0"> 260 <binaryDataArray encodedLength="0">
247 <referenceableParamGroupRef ref="mzArray" /> 261 <referenceableParamGroupRef ref="mzArray" />
265 <cvParam cvRef="MS" accession="MS:1000795" name="no combination" value="" /> 279 <cvParam cvRef="MS" accession="MS:1000795" name="no combination" value="" />
266 <scan instrumentConfigurationRef="IC1"> 280 <scan instrumentConfigurationRef="IC1">
267 <referenceableParamGroupRef ref="scan1" /> 281 <referenceableParamGroupRef ref="scan1" />
268 <cvParam cvRef="IMS" accession="IMS:1000050" name="position x" value="7" /> 282 <cvParam cvRef="IMS" accession="IMS:1000050" name="position x" value="7" />
269 <cvParam cvRef="IMS" accession="IMS:1000051" name="position y" value="3" /> 283 <cvParam cvRef="IMS" accession="IMS:1000051" name="position y" value="3" />
284 <userParam name="3DPositionX" value="7.000000" />
285 <userParam name="3DPositionY" value="3.000000" />
270 </scan> 286 </scan>
271 </scanList> 287 </scanList>
272 <binaryDataArrayList count="2"> 288 <binaryDataArrayList count="2">
273 <binaryDataArray encodedLength="0"> 289 <binaryDataArray encodedLength="0">
274 <referenceableParamGroupRef ref="mzArray" /> 290 <referenceableParamGroupRef ref="mzArray" />
292 <cvParam cvRef="MS" accession="MS:1000795" name="no combination" value="" /> 308 <cvParam cvRef="MS" accession="MS:1000795" name="no combination" value="" />
293 <scan instrumentConfigurationRef="IC1"> 309 <scan instrumentConfigurationRef="IC1">
294 <referenceableParamGroupRef ref="scan1" /> 310 <referenceableParamGroupRef ref="scan1" />
295 <cvParam cvRef="IMS" accession="IMS:1000050" name="position x" value="8" /> 311 <cvParam cvRef="IMS" accession="IMS:1000050" name="position x" value="8" />
296 <cvParam cvRef="IMS" accession="IMS:1000051" name="position y" value="3" /> 312 <cvParam cvRef="IMS" accession="IMS:1000051" name="position y" value="3" />
313 <userParam name="3DPositionX" value="8.000000" />
314 <userParam name="3DPositionY" value="3.000000" />
297 </scan> 315 </scan>
298 </scanList> 316 </scanList>
299 <binaryDataArrayList count="2"> 317 <binaryDataArrayList count="2">
300 <binaryDataArray encodedLength="0"> 318 <binaryDataArray encodedLength="0">
301 <referenceableParamGroupRef ref="mzArray" /> 319 <referenceableParamGroupRef ref="mzArray" />