comparison data_exporter.xml @ 15:b6a4dd06cde0 draft

"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cardinal commit badc51fcd74ba0c14cd1ae64d5f524291fa11441"

14:be5d1c3c51e5

    ]]></configfile>
    </configfiles>
    <inputs>
        <expand macro="reading_msidata"/>
        <param name="output_options" type="select" display="checkboxes" optional="False" multiple="true" label="Multiple output files can be selected">
            <option value="int_matrix" selected="True" >intensity matrix</option>
            <option value="mz_tabular">mz feature output</option>
            <option value="pixel_tabular">pixel output</option>
        </param>
        <conditional name="counting_calibrants">

                <option value="yes_annotation">yes</option>
            </param>
            <when value="no_annotation"/>
            <when value="yes_annotation">
                <expand macro="reading_pixel_annotations"/>
                <param name="summary_type" type="select" display="checkboxes" optional="False" multiple="true" label="Calculation for each m/z and all pixels of a annotation group" help="This step will only work if pixel annotations are provided">
                    <option value="mean">mean</option>
                    <option value="median">median</option>
                    <option value="sd">standard deviation</option>
                </param>
            </when>

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    ]]></configfile>
    </configfiles>
    <inputs>
        <expand macro="reading_msidata"/>
        <param name="output_options" type="select" optional="False" multiple="true" label="Multiple output files can be selected">
            <option value="int_matrix" selected="True" >intensity matrix</option>
            <option value="mz_tabular">mz feature output</option>
            <option value="pixel_tabular">pixel output</option>
        </param>
        <conditional name="counting_calibrants">

                <option value="yes_annotation">yes</option>
            </param>
            <when value="no_annotation"/>
            <when value="yes_annotation">
                <expand macro="reading_pixel_annotations"/>
                <param name="summary_type" type="select" optional="False" multiple="true" label="Calculation for each m/z and all pixels of a annotation group" help="This step will only work if pixel annotations are provided">
                    <option value="mean">mean</option>
                    <option value="median">median</option>
                    <option value="sd">standard deviation</option>
                </param>
            </when>