Mercurial > repos > galaxyp > cardinal_filtering

diff filtering.xml @ 10:a4475567dd22 draft

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"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cardinal commit ca89f8e007c6b17f7c30066729e05b8686ab975a"
author galaxyp
date Sun, 27 Sep 2020 10:54:29 +0000
parents e92efed83208
children 105056844497
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line diff
--- a/filtering.xml	Thu Sep 24 11:39:44 2020 +0000
+++ b/filtering.xml	Sun Sep 27 10:54:29 2020 +0000
@@ -386,9 +386,7 @@
         guides(fill=guide_legend(ncol=5,byrow=TRUE))
       print(histogram_mz + scale_fill_manual(values=c("#00BFC4", "#F8766D")))
 
-
-
-        dev.off()
+    dev.off()
 
     ## save msidata as imzML file, will only work if there is at least 1 m/z left
 
@@ -396,6 +394,7 @@
             ## make sure that coordinates are integers
             coord(msidata)\$y = as.integer(coord(msidata)\$y)
             coord(msidata)\$x = as.integer(coord(msidata)\$x)
+            msidata = as(msidata, "MSContinuousImagingExperiment")
         writeImzML(msidata, "out")}