# HG changeset patch
# User galaxyp
# Date 1645562877 0
# Node ID c4df3005e04dec0d13fb0834c78f67c91a92ac3c
# Parent  5629069fca8fd39c55f3a638ff3ce1a145eb1b0f
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cardinal commit badc51fcd74ba0c14cd1ae64d5f524291fa11441"

diff -r 5629069fca8f -r c4df3005e04d macros.xml
--- a/macros.xml	Sun Aug 29 07:35:34 2021 +0000
+++ b/macros.xml	Tue Feb 22 20:47:57 2022 +0000
@@ -178,7 +178,7 @@
 
         - MSI data: 3 types of input data can be used:
 
-            - imzml file (upload imzml and ibd file via the "composite" function) `Introduction to the imzml format <https://ms-imaging.org/wp/imzml/>`_
+            - imzml file (upload imzml and ibd file via the "composite" function) `Introduction to the imzml format <https://ms-imaging.org/imzml/>`_
             - Analyze7.5 (upload hdr, img and t2m file via the "composite" function)
             - Cardinal "MSImageSet" or "MSImagingExperiment" saved as .RData
     ]]></token>
@@ -219,21 +219,21 @@
 
     ]]></token>
     <token name="@SPECTRA_TABULAR_INPUT_DESCRIPTION@"><![CDATA[
-        - Optional file with pixel coordinates and annotation: 
+        - Optional file with pixel coordinates and annotation:
 
             - Tabular file: One column with x values, one column with y values and one column with annotations
             - The file is allowed to have any column names as header (in this case set "Tabular file contains a header line" to yes)
             - Pixel with coordinates outside the coordinates of the input file are ignored
 
+
                 ::
-
+                
                       x_coord     y_coord    annotation
                         1            1        healthy
                         2            1        healthy
                         3            1        disease
                         ...
                         ...
-
     ]]></token>
 
     <xml name="reading_msidata">
diff -r 5629069fca8f -r c4df3005e04d test-data/DGMM_annotations.tabular
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/DGMM_annotations.tabular	Tue Feb 22 20:47:57 2022 +0000
@@ -0,0 +1,401 @@
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diff -r 5629069fca8f -r c4df3005e04d test-data/coloc1.pdf
Binary file test-data/coloc1.pdf has changed
diff -r 5629069fca8f -r c4df3005e04d test-data/coloc2.pdf
Binary file test-data/coloc2.pdf has changed
diff -r 5629069fca8f -r c4df3005e04d test-data/coloc3.pdf
Binary file test-data/coloc3.pdf has changed
diff -r 5629069fca8f -r c4df3005e04d test-data/coloc_table1.tabular
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/coloc_table1.tabular	Tue Feb 22 20:47:57 2022 +0000
@@ -0,0 +1,11 @@
+mz	correlation	M1	M2
+1023.70806884766	1	1	1
+1135.93347167969	0.94302593356566	0.875	0.875
+1200.46533203125	0.929209321928257	0.865	0.865
+1361.26818847656	0.671211137378556	0.71	0.71
+1227.93798828125	0.667168853181017	0.675	0.675
+1453.50952148438	0.665731065791311	0.695	0.695
+1858.89855957031	0.662094302798731	0.705	0.705
+781.236755371094	0.389123692250897	0.65	0.65
+473.920562744141	0.363240913030914	0.6	0.6
+788.86328125	0.337801573243261	0.605	0.605
diff -r 5629069fca8f -r c4df3005e04d test-data/coloc_table2.tabular
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/coloc_table2.tabular	Tue Feb 22 20:47:57 2022 +0000
@@ -0,0 +1,6 @@
+mz	correlation	M1	M2
+473.920562744141	0.894244530237853	1	0.455
+788.86328125	0.767668409422198	1	0.455
+781.236755371094	0.702693174822292	0.989010989010989	0.45
+1135.93347167969	0.41173637823825	0.846153846153846	0.385
+1023.70806884766	0.332982169243747	0.791208791208791	0.36
diff -r 5629069fca8f -r c4df3005e04d test-data/coloc_table3.tabular
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/coloc_table3.tabular	Tue Feb 22 20:47:57 2022 +0000
@@ -0,0 +1,51 @@
+mz	correlation	M1	M2
+100.583335876465	1	1	1
+100.666664123535	1	1	1
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diff -r 5629069fca8f -r c4df3005e04d test-data/dgmm_summary1.tabular
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/dgmm_summary1.tabular	Tue Feb 22 20:47:57 2022 +0000
@@ -0,0 +1,11 @@
+r	k	Classes/group	m/z	Feature
+1	6	2	473.920562744141	1
+1	6	4	781.236755371094	2
+1	6	1	788.86328125	3
+1	6	3	1023.70806884766	4
+1	6	3	1135.93347167969	5
+1	6	4	1200.46533203125	6
+1	6	2	1227.93798828125	7
+1	6	2	1361.26818847656	8
+1	6	2	1453.50952148438	9
+1	6	2	1858.89855957031	10
diff -r 5629069fca8f -r c4df3005e04d test-data/dgmm_summary2.tabular
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/dgmm_summary2.tabular	Tue Feb 22 20:47:57 2022 +0000
@@ -0,0 +1,11 @@
+r	k	Classes/group	m/z	Feature
+2	10	1	473.920562744141	1
+2	10	2	781.236755371094	2
+2	10	1	788.86328125	3
+2	10	1.67	1023.70806884766	4
+2	10	1.67	1135.93347167969	5
+2	10	1.67	1200.46533203125	6
+2	10	1	1227.93798828125	7
+2	10	1.67	1361.26818847656	8
+2	10	1	1453.50952148438	9
+2	10	1.33	1858.89855957031	10
diff -r 5629069fca8f -r c4df3005e04d test-data/dgmm_test1.pdf
Binary file test-data/dgmm_test1.pdf has changed
diff -r 5629069fca8f -r c4df3005e04d test-data/dgmm_test2.RData
Binary file test-data/dgmm_test2.RData has changed
diff -r 5629069fca8f -r c4df3005e04d test-data/dgmm_test2.pdf
Binary file test-data/dgmm_test2.pdf has changed
diff -r 5629069fca8f -r c4df3005e04d test-data/estimates_r1_k6_mz1135.93347167969.tabular
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/estimates_r1_k6_mz1135.93347167969.tabular	Tue Feb 22 20:47:57 2022 +0000
@@ -0,0 +1,4 @@
+group	class	mean	var
+files_	1	0.172268980321456	0.133976695047921
+files_	2	4.88607208725277	0.301220362077463
+files_	3	6.64940193494161	0.752878508867188
diff -r 5629069fca8f -r c4df3005e04d test-data/estimates_r2_k10_mz1200.46533203125.tabular
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/estimates_r2_k10_mz1200.46533203125.tabular	Tue Feb 22 20:47:57 2022 +0000
@@ -0,0 +1,6 @@
+group	class	mean	var
+bg	1	0.216553505243044	0.158967083338173
+bg	2	4.13395686852547	0.859771560896229
+circle	3	3.16694802842791	0.372813860593546
+circle	4	4.48944198265987	1.71739690046886
+square	5	3.8928901507304	1.21620428871296
diff -r 5629069fca8f -r c4df3005e04d test-data/probability_r1_k6_mz1023.70806884766.tabular
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/probability_r1_k6_mz1023.70806884766.tabular	Tue Feb 22 20:47:57 2022 +0000
@@ -0,0 +1,401 @@
+x	y	pixel_names	class	X1	X2	X3
+1	1	xy_1_1	3	0.0917647853727095	0.0922578863762729	0.815977328251018
+2	1	xy_2_1	2	0.100600898069221	0.796592711289945	0.102806390640834
+3	1	xy_3_1	2	0.0667865935968222	0.862320681023267	0.070892725379911
+4	1	xy_4_1	2	0.0989488158618163	0.800884528474502	0.100166655663682
+5	1	xy_5_1	2	0.0799636103030095	0.838443782101855	0.0815926075951352
+6	1	xy_6_1	2	0.0759173557100512	0.84637410749561	0.0777085367943388
+7	1	xy_7_1	2	0.0834313744936965	0.831348154231328	0.0852204712749755
+8	1	xy_8_1	1	0.882194666445594	0.0589026668387033	0.0589026667157024
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+11	1	xy_11_1	1	0.902126529015311	0.0489367355069679	0.0489367354777208
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+1	2	xy_1_2	3	0.116318148103275	0.176392372066194	0.70728947983053
+2	2	xy_2_2	2	0.123338375854007	0.549106377317356	0.327555246828637
+3	2	xy_3_2	3	0.134579979985956	0.341119648223749	0.524300371790295
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diff -r 5629069fca8f -r c4df3005e04d test-data/probability_r2_k10_mz1135.93347167969.tabular
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/probability_r2_k10_mz1135.93347167969.tabular	Tue Feb 22 20:47:57 2022 +0000
@@ -0,0 +1,401 @@
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+3	1	xy_3_1	3	NA	NA	0.875615363102476	0.124384636897524	NA
+4	1	xy_4_1	3	NA	NA	0.851266299854111	0.148733700145889	NA
+5	1	xy_5_1	3	NA	NA	0.860051638085976	0.139948361914025	NA
+6	1	xy_6_1	3	NA	NA	0.761647436676139	0.238352563323861	NA
+7	1	xy_7_1	2	0.182529426057793	0.817470573942208	NA	NA	NA
+8	1	xy_8_1	1	0.941039895576799	0.0589601044232009	NA	NA	NA
+9	1	xy_9_1	1	0.943908265739545	0.0560917342604552	NA	NA	NA
+10	1	xy_10_1	1	0.946144146674231	0.0538558533257694	NA	NA	NA
+11	1	xy_11_1	1	0.946407758474576	0.0535922415254241	NA	NA	NA
+12	1	xy_12_1	1	0.954188476238198	0.0458115237618019	NA	NA	NA
+13	1	xy_13_1	1	0.946620679361554	0.0533793206384464	NA	NA	NA
+14	1	xy_14_1	1	0.946383603328925	0.0536163966710746	NA	NA	NA
+15	1	xy_15_1	1	0.954534262297142	0.0454657377028575	NA	NA	NA
+16	1	xy_16_1	1	0.946937989073607	0.053062010926393	NA	NA	NA
+17	1	xy_17_1	1	0.947433161876214	0.0525668381237858	NA	NA	NA
+18	1	xy_18_1	1	0.947739055467613	0.0522609445323874	NA	NA	NA
+19	1	xy_19_1	1	0.947751293668412	0.0522487063315876	NA	NA	NA
+20	1	xy_20_1	1	0.952255848236646	0.0477441517633543	NA	NA	NA
+1	2	xy_1_2	3	NA	NA	0.859206228983602	0.140793771016398	NA
+2	2	xy_2_2	3	NA	NA	0.868966809797105	0.131033190202895	NA
+3	2	xy_3_2	3	NA	NA	0.875160479466722	0.124839520533278	NA
+4	2	xy_4_2	3	NA	NA	0.804220530331249	0.195779469668752	NA
+5	2	xy_5_2	3	NA	NA	0.794510153832606	0.205489846167394	NA
+6	2	xy_6_2	3	NA	NA	0.856628649807154	0.143371350192846	NA
+7	2	xy_7_2	3	NA	NA	0.855718253316932	0.144281746683068	NA
+8	2	xy_8_2	3	NA	NA	0.827753889743415	0.172246110256585	NA
+9	2	xy_9_2	1	0.946284298320806	0.0537157016791942	NA	NA	NA
+10	2	xy_10_2	1	0.769374657306886	0.230625342693115	NA	NA	NA
+11	2	xy_11_2	1	0.945090766923877	0.0549092330761232	NA	NA	NA
+12	2	xy_12_2	1	0.945737335422033	0.054262664577967	NA	NA	NA
+13	2	xy_13_2	1	0.945600558567459	0.0543994414325411	NA	NA	NA
+14	2	xy_14_2	1	0.950847256021339	0.0491527439786609	NA	NA	NA
+15	2	xy_15_2	1	0.945219115579397	0.0547808844206027	NA	NA	NA
+16	2	xy_16_2	1	0.94620821674802	0.0537917832519801	NA	NA	NA
+17	2	xy_17_2	1	0.953530272335786	0.0464697276642139	NA	NA	NA
+18	2	xy_18_2	1	0.951570612821144	0.0484293871788565	NA	NA	NA
+19	2	xy_19_2	1	0.955821461571265	0.0441785384287349	NA	NA	NA
+20	2	xy_20_2	1	0.947743776276186	0.0522562237238136	NA	NA	NA
+1	3	xy_1_3	3	NA	NA	0.835481115700174	0.164518884299826	NA
+2	3	xy_2_3	3	NA	NA	0.695409629420474	0.304590370579526	NA
+3	3	xy_3_3	3	NA	NA	0.876462568112197	0.123537431887803	NA
+4	3	xy_4_3	3	NA	NA	0.85082264789337	0.14917735210663	NA
+5	3	xy_5_3	3	NA	NA	0.878890510088586	0.121109489911414	NA
+6	3	xy_6_3	3	NA	NA	0.870311243843917	0.129688756156083	NA
+7	3	xy_7_3	3	NA	NA	0.87300813797666	0.12699186202334	NA
+8	3	xy_8_3	3	NA	NA	0.811661586530175	0.188338413469825	NA
+9	3	xy_9_3	3	NA	NA	0.856157399446096	0.143842600553904	NA
+10	3	xy_10_3	1	0.865627377090542	0.134372622909458	NA	NA	NA
+11	3	xy_11_3	1	0.94682656889567	0.0531734311043297	NA	NA	NA
+12	3	xy_12_3	1	0.893467278448154	0.106532721551846	NA	NA	NA
+13	3	xy_13_3	1	0.664961582397203	0.335038417602797	NA	NA	NA
+14	3	xy_14_3	1	0.944081001351204	0.0559189986487956	NA	NA	NA
+15	3	xy_15_3	2	0.490705121594534	0.509294878405466	NA	NA	NA
+16	3	xy_16_3	1	0.945709649905103	0.054290350094897	NA	NA	NA
+17	3	xy_17_3	1	0.954438913225744	0.0455610867742563	NA	NA	NA
+18	3	xy_18_3	1	0.947733594972515	0.0522664050274855	NA	NA	NA
+19	3	xy_19_3	1	0.940190235235463	0.0598097647645374	NA	NA	NA
+20	3	xy_20_3	1	0.947744927295705	0.0522550727042953	NA	NA	NA
+1	4	xy_1_4	3	NA	NA	0.859290347356755	0.140709652643245	NA
+2	4	xy_2_4	3	NA	NA	0.848944520847906	0.151055479152094	NA
+3	4	xy_3_4	3	NA	NA	0.862233623147597	0.137766376852403	NA
+4	4	xy_4_4	3	NA	NA	0.877889844474806	0.122110155525194	NA
+5	4	xy_5_4	3	NA	NA	0.832791852661168	0.167208147338832	NA
+6	4	xy_6_4	3	NA	NA	0.86141090652765	0.13858909347235	NA
+7	4	xy_7_4	3	NA	NA	0.856725598854547	0.143274401145453	NA
+8	4	xy_8_4	3	NA	NA	0.862594653289558	0.137405346710442	NA
+9	4	xy_9_4	4	NA	NA	0.311020143922041	0.688979856077959	NA
+10	4	xy_10_4	2	0.310400596407974	0.689599403592026	NA	NA	NA
+11	4	xy_11_4	1	0.949122117640388	0.0508778823596118	NA	NA	NA
+12	4	xy_12_4	1	0.94771473811543	0.0522852618845697	NA	NA	NA
+13	4	xy_13_4	1	0.945144439831975	0.0548555601680247	NA	NA	NA
+14	4	xy_14_4	1	0.9479921938618	0.0520078061382	NA	NA	NA
+15	4	xy_15_4	1	0.952856502465909	0.0471434975340905	NA	NA	NA
+16	4	xy_16_4	1	0.94603823314778	0.0539617668522203	NA	NA	NA
+17	4	xy_17_4	1	0.947140448639676	0.0528595513603244	NA	NA	NA
+18	4	xy_18_4	1	0.948394566672814	0.0516054333271861	NA	NA	NA
+19	4	xy_19_4	1	0.955877385436828	0.0441226145631717	NA	NA	NA
+20	4	xy_20_4	1	0.954608847759487	0.0453911522405126	NA	NA	NA
+1	5	xy_1_5	3	NA	NA	0.708678816602691	0.291321183397309	NA
+2	5	xy_2_5	3	NA	NA	0.866688795169369	0.133311204830631	NA
+3	5	xy_3_5	3	NA	NA	0.83124092507812	0.16875907492188	NA
+4	5	xy_4_5	3	NA	NA	0.871056045374113	0.128943954625887	NA
+5	5	xy_5_5	3	NA	NA	0.864944964416311	0.135055035583689	NA
+6	5	xy_6_5	3	NA	NA	0.828342523056709	0.171657476943291	NA
+7	5	xy_7_5	3	NA	NA	0.854440891173953	0.145559108826047	NA
+8	5	xy_8_5	3	NA	NA	0.835531654327779	0.164468345672221	NA
+9	5	xy_9_5	4	NA	NA	0.426778235447402	0.573221764552598	NA
+10	5	xy_10_5	2	0.35257154017378	0.64742845982622	NA	NA	NA
+11	5	xy_11_5	1	0.949826176399276	0.0501738236007243	NA	NA	NA
+12	5	xy_12_5	1	0.944645411896293	0.0553545881037068	NA	NA	NA
+13	5	xy_13_5	1	0.94908702741833	0.0509129725816703	NA	NA	NA
+14	5	xy_14_5	1	0.744060336891656	0.255939663108344	NA	NA	NA
+15	5	xy_15_5	1	0.947108365627823	0.0528916343721766	NA	NA	NA
+16	5	xy_16_5	1	0.941900021236051	0.0580999787639489	NA	NA	NA
+17	5	xy_17_5	1	0.946891281517419	0.0531087184825809	NA	NA	NA
+18	5	xy_18_5	1	0.949780896701428	0.0502191032985722	NA	NA	NA
+19	5	xy_19_5	1	0.947661323747976	0.0523386762520237	NA	NA	NA
+20	5	xy_20_5	1	0.949977005622238	0.0500229943777616	NA	NA	NA
+1	6	xy_1_6	3	NA	NA	0.869380299659226	0.130619700340774	NA
+2	6	xy_2_6	3	NA	NA	0.794275879655546	0.205724120344454	NA
+3	6	xy_3_6	3	NA	NA	0.873370797064789	0.126629202935211	NA
+4	6	xy_4_6	3	NA	NA	0.712786974626446	0.287213025373554	NA
+5	6	xy_5_6	3	NA	NA	0.83355641643066	0.16644358356934	NA
+6	6	xy_6_6	3	NA	NA	0.8717503068749	0.1282496931251	NA
+7	6	xy_7_6	3	NA	NA	0.752686485226544	0.247313514773456	NA
+8	6	xy_8_6	3	NA	NA	0.781766561168356	0.218233438831644	NA
+9	6	xy_9_6	3	NA	NA	0.636880967319099	0.363119032680901	NA
+10	6	xy_10_6	3	NA	NA	0.826838178010531	0.173161821989469	NA
+11	6	xy_11_6	1	0.948937537182194	0.0510624628178057	NA	NA	NA
+12	6	xy_12_6	1	0.944866378577411	0.0551336214225886	NA	NA	NA
+13	6	xy_13_6	1	0.945363853020618	0.0546361469793822	NA	NA	NA
+14	6	xy_14_6	1	0.947073716372855	0.0529262836271448	NA	NA	NA
+15	6	xy_15_6	1	0.952593797957732	0.0474062020422683	NA	NA	NA
+16	6	xy_16_6	1	0.945467682694886	0.0545323173051142	NA	NA	NA
+17	6	xy_17_6	1	0.923931767253487	0.0760682327465126	NA	NA	NA
+18	6	xy_18_6	1	0.951883203886192	0.0481167961138083	NA	NA	NA
+19	6	xy_19_6	1	0.955281580836861	0.0447184191631393	NA	NA	NA
+20	6	xy_20_6	1	0.946588971596075	0.0534110284039249	NA	NA	NA
+1	7	xy_1_7	3	NA	NA	0.85852265104932	0.14147734895068	NA
+2	7	xy_2_7	3	NA	NA	0.872285730739343	0.127714269260657	NA
+3	7	xy_3_7	3	NA	NA	0.862372785126613	0.137627214873387	NA
+4	7	xy_4_7	3	NA	NA	0.853013192766013	0.146986807233987	NA
+5	7	xy_5_7	3	NA	NA	0.862213959733968	0.137786040266032	NA
+6	7	xy_6_7	3	NA	NA	0.801964126537999	0.198035873462001	NA
+7	7	xy_7_7	3	NA	NA	0.870272013894925	0.129727986105075	NA
+8	7	xy_8_7	3	NA	NA	0.845666914611345	0.154333085388655	NA
+9	7	xy_9_7	3	NA	NA	0.853035877491773	0.146964122508227	NA
+10	7	xy_10_7	3	NA	NA	0.860125426935811	0.139874573064189	NA
+11	7	xy_11_7	1	0.939608912468137	0.0603910875318628	NA	NA	NA
+12	7	xy_12_7	1	0.947908320784015	0.0520916792159851	NA	NA	NA
+13	7	xy_13_7	1	0.606668291068225	0.393331708931775	NA	NA	NA
+14	7	xy_14_7	1	0.940615513158612	0.0593844868413878	NA	NA	NA
+15	7	xy_15_7	1	0.940378151728832	0.0596218482711677	NA	NA	NA
+16	7	xy_16_7	1	0.688860295443105	0.311139704556895	NA	NA	NA
+17	7	xy_17_7	1	0.828517790554322	0.171482209445678	NA	NA	NA
+18	7	xy_18_7	1	0.942697190677603	0.057302809322397	NA	NA	NA
+19	7	xy_19_7	1	0.943747065306261	0.0562529346937391	NA	NA	NA
+20	7	xy_20_7	1	0.943890883073635	0.0561091169263652	NA	NA	NA
+1	8	xy_1_8	3	NA	NA	0.839495701300916	0.160504298699084	NA
+2	8	xy_2_8	3	NA	NA	0.839363088896053	0.160636911103946	NA
+3	8	xy_3_8	3	NA	NA	0.877912965382988	0.122087034617012	NA
+4	8	xy_4_8	3	NA	NA	0.837582580219842	0.162417419780158	NA
+5	8	xy_5_8	3	NA	NA	0.844238403629106	0.155761596370894	NA
+6	8	xy_6_8	3	NA	NA	0.832619796586721	0.167380203413279	NA
+7	8	xy_7_8	3	NA	NA	0.859780669074422	0.140219330925578	NA
+8	8	xy_8_8	3	NA	NA	0.857307891639054	0.142692108360946	NA
+9	8	xy_9_8	3	NA	NA	0.734303546133108	0.265696453866892	NA
+10	8	xy_10_8	1	0.759026035837954	0.240973964162046	NA	NA	NA
+11	8	xy_11_8	1	0.923943664087017	0.0760563359129831	NA	NA	NA
+12	8	xy_12_8	1	0.825046757803008	0.174953242196992	NA	NA	NA
+13	8	xy_13_8	1	0.927622210033909	0.072377789966091	NA	NA	NA
+14	8	xy_14_8	1	0.936520451976929	0.0634795480230711	NA	NA	NA
+15	8	xy_15_8	1	0.925998553689414	0.0740014463105857	NA	NA	NA
+16	8	xy_16_8	1	0.744143958418101	0.255856041581899	NA	NA	NA
+17	8	xy_17_8	1	0.927662750905109	0.072337249094891	NA	NA	NA
+18	8	xy_18_8	1	0.938951697428001	0.0610483025719986	NA	NA	NA
+19	8	xy_19_8	1	0.940928710225265	0.0590712897747354	NA	NA	NA
+20	8	xy_20_8	1	0.940749875626563	0.0592501243734375	NA	NA	NA
+1	9	xy_1_9	3	NA	NA	0.87717908816612	0.12282091183388	NA
+2	9	xy_2_9	3	NA	NA	0.859865853793513	0.140134146206487	NA
+3	9	xy_3_9	3	NA	NA	0.791478572499058	0.208521427500942	NA
+4	9	xy_4_9	3	NA	NA	0.871464501711314	0.128535498288686	NA
+5	9	xy_5_9	3	NA	NA	0.851579932811066	0.148420067188934	NA
+6	9	xy_6_9	3	NA	NA	0.866554360744126	0.133445639255874	NA
+7	9	xy_7_9	3	NA	NA	0.842562875582308	0.157437124417692	NA
+8	9	xy_8_9	4	NA	NA	0.291318152228923	0.708681847771077	NA
+9	9	xy_9_9	4	NA	NA	0.281276555716685	0.718723444283315	NA
+10	9	xy_10_9	2	0.159869954330051	0.84013004566995	NA	NA	NA
+11	9	xy_11_9	2	0.142393408674551	0.857606591325449	NA	NA	NA
+12	9	xy_12_9	2	0.306234609367576	0.693765390632424	NA	NA	NA
+13	9	xy_13_9	2	0.170462810666442	0.829537189333558	NA	NA	NA
+14	9	xy_14_9	2	0.147886538161998	0.852113461838003	NA	NA	NA
+15	9	xy_15_9	2	0.158721406226984	0.841278593773016	NA	NA	NA
+16	9	xy_16_9	2	0.14649494921929	0.85350505078071	NA	NA	NA
+17	9	xy_17_9	2	0.237410919002814	0.762589080997186	NA	NA	NA
+18	9	xy_18_9	2	0.313447867489447	0.686552132510553	NA	NA	NA
+19	9	xy_19_9	2	0.204399189948879	0.795600810051121	NA	NA	NA
+20	9	xy_20_9	2	0.174736554536592	0.825263445463408	NA	NA	NA
+1	10	xy_1_10	3	NA	NA	0.81190663657937	0.18809336342063	NA
+2	10	xy_2_10	3	NA	NA	0.874723814560178	0.125276185439822	NA
+3	10	xy_3_10	3	NA	NA	0.823656123246783	0.176343876753217	NA
+4	10	xy_4_10	3	NA	NA	0.774037099680507	0.225962900319493	NA
+5	10	xy_5_10	3	NA	NA	0.85933121538065	0.140668784619349	NA
+6	10	xy_6_10	3	NA	NA	0.67165333366972	0.32834666633028	NA
+7	10	xy_7_10	3	NA	NA	0.853249967623256	0.146750032376744	NA
+8	10	xy_8_10	4	NA	NA	0.272273652014957	0.727726347985043	NA
+9	10	xy_9_10	2	0.312444358381102	0.687555641618898	NA	NA	NA
+10	10	xy_10_10	2	0.130074314004641	0.86992568599536	NA	NA	NA
+11	10	xy_11_10	2	0.12559212150261	0.87440787849739	NA	NA	NA
+12	10	xy_12_10	2	0.122160332718735	0.877839667281265	NA	NA	NA
+13	10	xy_13_10	2	0.156959824159884	0.843040175840116	NA	NA	NA
+14	10	xy_14_10	2	0.160366124748978	0.839633875251022	NA	NA	NA
+15	10	xy_15_10	2	0.132567710149668	0.867432289850332	NA	NA	NA
+16	10	xy_16_10	2	0.195072802254679	0.804927197745322	NA	NA	NA
+17	10	xy_17_10	2	0.192770438959689	0.807229561040311	NA	NA	NA
+18	10	xy_18_10	2	0.148448520214449	0.851551479785551	NA	NA	NA
+19	10	xy_19_10	2	0.136546130489683	0.863453869510317	NA	NA	NA
+20	10	xy_20_10	2	0.120212615023162	0.879787384976838	NA	NA	NA
+1	11	xy_1_11	2	0.2150241273944	0.7849758726056	NA	NA	NA
+2	11	xy_2_11	3	NA	NA	0.857901219814891	0.142098780185109	NA
+3	11	xy_3_11	3	NA	NA	0.879758815835409	0.120241184164591	NA
+4	11	xy_4_11	3	NA	NA	0.86215582812273	0.13784417187727	NA
+5	11	xy_5_11	3	NA	NA	0.877074947415041	0.122925052584959	NA
+6	11	xy_6_11	3	NA	NA	0.869506801384427	0.130493198615573	NA
+7	11	xy_7_11	3	NA	NA	0.790118184236069	0.209881815763931	NA
+8	11	xy_8_11	5	NA	NA	NA	NA	1
+9	11	xy_9_11	5	NA	NA	NA	NA	1
+10	11	xy_10_11	5	NA	NA	NA	NA	1
+11	11	xy_11_11	5	NA	NA	NA	NA	1
+12	11	xy_12_11	5	NA	NA	NA	NA	1
+13	11	xy_13_11	5	NA	NA	NA	NA	1
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diff -r 5629069fca8f -r c4df3005e04d test-data/spatial_DGMM_input.ibd
Binary file test-data/spatial_DGMM_input.ibd has changed
diff -r 5629069fca8f -r c4df3005e04d test-data/spatial_DGMM_input.imzML
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/spatial_DGMM_input.imzML	Tue Feb 22 20:47:57 2022 +0000
@@ -0,0 +1,11675 @@
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