Mercurial > repos > galaxyp > cardinal_preprocessing
diff macros.xml @ 16:798da6bdff3d draft
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cardinal commit badc51fcd74ba0c14cd1ae64d5f524291fa11441"
| author | galaxyp |
|---|---|
| date | Tue, 22 Feb 2022 20:56:10 +0000 |
| parents | accf9fb6ea01 |
| children |
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--- a/macros.xml Sun Aug 29 07:32:56 2021 +0000 +++ b/macros.xml Tue Feb 22 20:56:10 2022 +0000 @@ -178,7 +178,7 @@ - MSI data: 3 types of input data can be used: - - imzml file (upload imzml and ibd file via the "composite" function) `Introduction to the imzml format <https://ms-imaging.org/wp/imzml/>`_ + - imzml file (upload imzml and ibd file via the "composite" function) `Introduction to the imzml format <https://ms-imaging.org/imzml/>`_ - Analyze7.5 (upload hdr, img and t2m file via the "composite" function) - Cardinal "MSImageSet" or "MSImagingExperiment" saved as .RData ]]></token> @@ -219,21 +219,21 @@ ]]></token> <token name="@SPECTRA_TABULAR_INPUT_DESCRIPTION@"><![CDATA[ - - Optional file with pixel coordinates and annotation: + - Optional file with pixel coordinates and annotation: - Tabular file: One column with x values, one column with y values and one column with annotations - The file is allowed to have any column names as header (in this case set "Tabular file contains a header line" to yes) - Pixel with coordinates outside the coordinates of the input file are ignored + :: - + x_coord y_coord annotation 1 1 healthy 2 1 healthy 3 1 disease ... ... - ]]></token> <xml name="reading_msidata">