diff test-data/112_auto_combined.imzml @ 6:19f68d9ae773 draft

"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cardinal commit 1df4591de435d232862f20669aea529ceb23b12a"
author galaxyp
date Fri, 13 Dec 2019 13:53:41 -0500
parents d4803c1e5e19
children bb9500286fe4
line wrap: on
line diff
--- a/test-data/112_auto_combined.imzml	Fri Sep 06 03:40:23 2019 -0400
+++ b/test-data/112_auto_combined.imzml	Fri Dec 13 13:53:41 2019 -0500
@@ -9,8 +9,8 @@
 		<fileContent>
 			<cvParam cvRef="MS" accession="MS:1000579" name="MS1 spectrum" value="" />
 			<cvParam cvRef="MS" accession="MS:1000128" name="profile spectrum" value="" />
-			<cvParam cvRef="IMS" accession="IMS:1000080" name="universally unique identifier" value="{00A83E55-A8F8-41D4-BBAC-345FA77AAB7E}" />
-			<cvParam cvRef="IMS" accession="IMS:1000091" name="ibd SHA-1" value="9B17E43E3D3B35BE3CD0AE65F40E0C6B27C2752F" />
+			<cvParam cvRef="IMS" accession="IMS:1000080" name="universally unique identifier" value="a0620366-fee2-4a2a-a643-0f0e0c9ae5a6" />
+			<cvParam cvRef="IMS" accession="IMS:1000091" name="ibd SHA-1" value="9bcd78ace1e6441dc527501b5eb3994fcf15b894" />
 			<cvParam cvRef="IMS" accession="IMS:1000030" name="continuous" value="" />
 		</fileContent>
 	</fileDescription>
@@ -22,19 +22,18 @@
 		</referenceableParamGroup>
 		<referenceableParamGroup id="scan1">
 			<cvParam cvRef="MS" accession="MS:1000093" name="increasing m/z scan" value="" />
-			<cvParam cvRef="MS" accession="MS:1000095" name="linear" value="" />
 		</referenceableParamGroup>
 		<referenceableParamGroup id="mzArray">
 			<cvParam cvRef="MS" accession="MS:1000576" name="no compression" value="" />
 			<cvParam cvRef="MS" accession="MS:1000514" name="m/z array" value="" unitCvRef="MS" unitAccession="MS:1000040" unitName="m/z" />
 			<cvParam cvRef="IMS" accession="IMS:1000101" name="external data" value="true" />
-			<cvParam cvRef="MS" accession="MS:1000521" name="32-bit float" value="32-bit float" />
+			<cvParam cvRef="MS" accession="MS:1000521" name="32-bit float" value="" />
 		</referenceableParamGroup>
 		<referenceableParamGroup id="intensityArray">
 			<cvParam cvRef="MS" accession="MS:1000576" name="no compression" value="" />
 			<cvParam cvRef="MS" accession="MS:1000515" name="intensity array" value="" unitCvRef="MS" unitAccession="MS:1000131" unitName="number of counts" />
 			<cvParam cvRef="IMS" accession="IMS:1000101" name="external data" value="true" />
-			<cvParam cvRef="MS" accession="MS:1000521" name="32-bit float" value="32-bit float" />
+			<cvParam cvRef="MS" accession="MS:1000521" name="32-bit float" value="" />
 		</referenceableParamGroup>
 	</referenceableParamGroupList>
 	<sampleList count="1">
@@ -43,18 +42,24 @@
 		</sample>
 	</sampleList>
 	<softwareList count="1">
-		<software id="Cardinal" version="1.12.1">
+		<software id="Cardinal" version="2.2.6">
 			<cvParam cvRef="MS" accession="MS:1000799" name="custom unreleased software tool" value="" />
 		</software>
 	</softwareList>
 	<scanSettingsList count="1">
 		<scanSettings id="scansettings1">
-			<cvParam cvRef="IMS" accession="IMS:1000042" name="max count of pixel x" value="15" />
+			<cvParam cvRef="IMS" accession="IMS:1000042" name="max count of pixel x" value="5" />
 			<cvParam cvRef="IMS" accession="IMS:1000043" name="max count of pixel y" value="3" />
+			<cvParam cvRef="IMS" accession="IMS:1000044" name="max dimension x" value="15" />
+			<cvParam cvRef="IMS" accession="IMS:1000045" name="max dimension y" value="3" />
+			<cvParam cvRef="IMS" accession="IMS:1000046" name="pixel size x" value="1.000000" />
+			<cvParam cvRef="IMS" accession="IMS:1000047" name="pixel size y" value="1.000000" />
 		</scanSettings>
 	</scanSettingsList>
 	<instrumentConfigurationList count="1">
-		<instrumentConfiguration id="IC1" />
+		<instrumentConfiguration id="IC1">
+			<cvParam cvRef="MS" accession="MS:1000031" name="instrument model" />
+		</instrumentConfiguration>
 	</instrumentConfigurationList>
 	<dataProcessingList count="1">
 		<dataProcessing id="CardinalWriteImzML">