Mercurial > repos > galaxyp > cardinal_segmentations

annotate test-data/out5.imzml @ 13:cc430977c8ff draft

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"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cardinal commit 180894cfabbee2d308be140a0f0b4dba119e88d4-dirty"
author galaxyp
date Wed, 23 Dec 2020 22:25:00 +0000
parents f4fcd7c81b5b
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
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034885df9b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cardinal commit f127be2141cf22e269c85282d226eb16fe14a9c1
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1 <?xml version="1.0"?>
034885df9b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cardinal commit f127be2141cf22e269c85282d226eb16fe14a9c1
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2 <mzML version="1.1" xmlns="http://psi.hupo.org/ms/mzml" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://psi.hupo.org/ms/mzml http://psidev.info/files/ms/mzML/xsd/mzML1.1.0_idx.xsd">
034885df9b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cardinal commit f127be2141cf22e269c85282d226eb16fe14a9c1
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3 <cvList count="3">
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4 <cv id="MS" fullName="Proteomics Standards Initiative Mass Spectrometry Ontology" version="1.3.1" URI="http://psidev.info/ms/mzML/psi-ms.obo" />
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5 <cv id="UO" fullName="Unit Ontology" version="1.15" URI="http://obo.cvs.sourceforge.net/obo/obo/ontology/phenotype/unit.obo" />
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6 <cv id="IMS" fullName="Imaging MS Ontology" version="0.9.1" URI="http://www.maldi-msi.org/download/imzml/imagingMS.obo" />
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7 </cvList>
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8 <fileDescription>
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9 <fileContent>
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10 <cvParam cvRef="MS" accession="MS:1000579" name="MS1 spectrum" value="" />
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f4fcd7c81b5b "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cardinal commit ca89f8e007c6b17f7c30066729e05b8686ab975a"
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f4fcd7c81b5b "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cardinal commit ca89f8e007c6b17f7c30066729e05b8686ab975a"
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15 </fileContent>
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16 </fileDescription>
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17 <referenceableParamGroupList count="4">
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18 <referenceableParamGroup id="spectrum1">
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19 <cvParam cvRef="MS" accession="MS:1000579" name="MS1 spectrum" value="" />
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20 <cvParam cvRef="MS" accession="MS:1000511" name="ms level" value="0" />
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21 <cvParam cvRef="MS" accession="MS:1000128" name="profile spectrum" value="" />
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22 </referenceableParamGroup>
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23 <referenceableParamGroup id="scan1">
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24 <cvParam cvRef="MS" accession="MS:1000093" name="increasing m/z scan" value="" />
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25 </referenceableParamGroup>
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26 <referenceableParamGroup id="mzArray">
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034885df9b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cardinal commit f127be2141cf22e269c85282d226eb16fe14a9c1
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28 <cvParam cvRef="MS" accession="MS:1000514" name="m/z array" value="" unitCvRef="MS" unitAccession="MS:1000040" unitName="m/z" />
034885df9b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cardinal commit f127be2141cf22e269c85282d226eb16fe14a9c1
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82f6c2f4332d "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cardinal commit 15e24b1f0143679647906bc427654f66b417a45c"
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31 </referenceableParamGroup>
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32 <referenceableParamGroup id="intensityArray">
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33 <cvParam cvRef="MS" accession="MS:1000576" name="no compression" value="" />
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34 <cvParam cvRef="MS" accession="MS:1000515" name="intensity array" value="" unitCvRef="MS" unitAccession="MS:1000131" unitName="number of counts" />
034885df9b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cardinal commit f127be2141cf22e269c85282d226eb16fe14a9c1
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82f6c2f4332d "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cardinal commit 15e24b1f0143679647906bc427654f66b417a45c"
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36 <cvParam cvRef="MS" accession="MS:1000521" name="32-bit float" value="" />
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37 </referenceableParamGroup>
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38 </referenceableParamGroupList>
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39 <sampleList count="1">
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40 <sample id="sample1" name="Sample1">
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41 <cvParam cvRef="MS" accession="MS:1000001" name="sample number" value="1" />
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42 </sample>
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43 </sampleList>
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44 <softwareList count="1">
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45 <software id="Cardinal" version="2.6.0">
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47 </software>
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48 </softwareList>
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49 <scanSettingsList count="1">
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50 <scanSettings id="scansettings1">
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51 <cvParam cvRef="IMS" accession="IMS:1000042" name="max count of pixel x" value="3" />
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82f6c2f4332d "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cardinal commit 15e24b1f0143679647906bc427654f66b417a45c"
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82f6c2f4332d "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cardinal commit 15e24b1f0143679647906bc427654f66b417a45c"
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82f6c2f4332d "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cardinal commit 15e24b1f0143679647906bc427654f66b417a45c"
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82f6c2f4332d "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cardinal commit 15e24b1f0143679647906bc427654f66b417a45c"
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82f6c2f4332d "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cardinal commit 15e24b1f0143679647906bc427654f66b417a45c"
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57 </scanSettings>
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58 </scanSettingsList>
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59 <instrumentConfigurationList count="1">
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82f6c2f4332d "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cardinal commit 15e24b1f0143679647906bc427654f66b417a45c"
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60 <instrumentConfiguration id="IC1">
82f6c2f4332d "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cardinal commit 15e24b1f0143679647906bc427654f66b417a45c"
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61 <cvParam cvRef="MS" accession="MS:1000031" name="instrument model" />
82f6c2f4332d "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cardinal commit 15e24b1f0143679647906bc427654f66b417a45c"
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62 </instrumentConfiguration>
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63 </instrumentConfigurationList>
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64 <dataProcessingList count="1">
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65 <dataProcessing id="CardinalWriteImzML">
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66 <processingMethod order="1" softwareRef="Cardinal">
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68 </processingMethod>
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69 </dataProcessing>
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70 </dataProcessingList>
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71 <run defaultInstrumentConfigurationRef="IC1" id="Experiment01" sampleRef="sample1">
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72 <spectrumList count="6" defaultDataProcessingRef="CardinalWriteImzML">
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73 <spectrum id="Spectrum=1" defaultArrayLength="0" index="1">
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74 <referenceableParamGroupRef ref="spectrum1" />
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75 <scanList count="1">
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77 <scan instrumentConfigurationRef="IC1">
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78 <referenceableParamGroupRef ref="scan1" />
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galaxyp
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galaxyp
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82f6c2f4332d "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cardinal commit 15e24b1f0143679647906bc427654f66b417a45c"
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galaxyp
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galaxyp
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82f6c2f4332d "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cardinal commit 15e24b1f0143679647906bc427654f66b417a45c"
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82f6c2f4332d "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cardinal commit 15e24b1f0143679647906bc427654f66b417a45c"
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galaxyp
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galaxyp
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galaxyp
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galaxyp
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82f6c2f4332d "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cardinal commit 15e24b1f0143679647906bc427654f66b417a45c"
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galaxyp
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galaxyp
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