# HG changeset patch # User galaxyp # Date 1576263133 18000 # Node ID b16b64ca7b7c5d5cfca446d6ff103734716df20d # Parent 9f7d1ec017673fda1002ba3402e30f186da67f15 "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cardinal commit 1df4591de435d232862f20669aea529ceb23b12a" diff -r 9f7d1ec01767 -r b16b64ca7b7c test-data/112_annotation_output.tabular --- a/test-data/112_annotation_output.tabular Fri Mar 22 08:15:15 2019 -0400 +++ b/test-data/112_annotation_output.tabular Fri Dec 13 13:52:13 2019 -0500 @@ -1,16 +1,16 @@ -x y sample_name file_name column_name NA.x NA.y NA -1 1 msidata_1.RData file_one col1 NA NA NA -1 2 msidata_1.RData file_one col1 NA NA NA -1 3 msidata_1.RData file_one col1 NA NA NA -10 1 123_combined.RData file_two col3 NA NA NA -10 2 123_combined.RData file_two col3 NA NA NA -10 3 123_combined.RData file_two col3 NA NA NA -15 1 123_combined.RData file_three col3 NA NA NA -15 2 123_combined.RData file_three col3 NA NA NA -15 3 123_combined.RData file_three col3 NA NA NA -7 1 123_combined.RData file_one col1 NA NA NA -7 2 123_combined.RData file_one col1 NA NA NA -7 3 123_combined.RData file_one col1 NA NA NA -9 1 123_combined.RData file_two col2 NA NA NA -9 2 123_combined.RData file_two col2 NA NA NA -9 3 123_combined.RData file_two col2 NA NA NA +x y sample_name file_name column_name +1 1 msidata_1.RData file_one col1 +1 2 msidata_1.RData file_one col1 +1 3 msidata_1.RData file_one col1 +7 1 123_combined.RData file_one col1 +7 2 123_combined.RData file_one col1 +7 3 123_combined.RData file_one col1 +9 1 123_combined.RData file_two col2 +10 1 123_combined.RData file_two col3 +9 2 123_combined.RData file_two col2 +10 2 123_combined.RData file_two col3 +9 3 123_combined.RData file_two col2 +10 3 123_combined.RData file_two col3 +15 1 123_combined.RData file_three col3 +15 2 123_combined.RData file_three col3 +15 3 123_combined.RData file_three col3 diff -r 9f7d1ec01767 -r b16b64ca7b7c test-data/112_auto_combined.ibd Binary file test-data/112_auto_combined.ibd has changed diff -r 9f7d1ec01767 -r b16b64ca7b7c test-data/112_auto_combined.imzml --- a/test-data/112_auto_combined.imzml Fri Mar 22 08:15:15 2019 -0400 +++ b/test-data/112_auto_combined.imzml Fri Dec 13 13:52:13 2019 -0500 @@ -9,8 +9,8 @@ - - + + @@ -22,19 +22,18 @@ - - + - + @@ -43,18 +42,24 @@ - + - + + + + + - + + + diff -r 9f7d1ec01767 -r b16b64ca7b7c test-data/112_auto_combined.imzml.txt --- a/test-data/112_auto_combined.imzml.txt Fri Mar 22 08:15:15 2019 -0400 +++ b/test-data/112_auto_combined.imzml.txt Fri Dec 13 13:52:13 2019 -0500 @@ -1,4 +1,4 @@ imzML file: total 556 --rw-r--r-- 1 meli meli 537552 Feb 12 12:25 ibd --rw-r--r-- 1 meli meli 25466 Feb 12 12:25 imzml +-rw-r--r-- 1 meli meli 537552 Dez 11 00:10 ibd +-rw-r--r-- 1 meli meli 25811 Dez 11 00:10 imzml diff -r 9f7d1ec01767 -r b16b64ca7b7c test-data/112_auto_combined_QC.pdf Binary file test-data/112_auto_combined_QC.pdf has changed diff -r 9f7d1ec01767 -r b16b64ca7b7c test-data/123_annotation_output.tabular --- a/test-data/123_annotation_output.tabular Fri Mar 22 08:15:15 2019 -0400 +++ b/test-data/123_annotation_output.tabular Fri Dec 13 13:52:13 2019 -0500 @@ -1,13 +1,13 @@ -x y sample_name file_name column_name NA.x NA.y NA -1 1 File1 file_one col1 NA NA NA -1 2 File1 file_one col1 NA NA NA -1 3 File1 file_one col1 NA NA NA -3 1 File2 file_two col2 NA NA NA -3 2 File2 file_two col2 NA NA NA -3 3 File2 file_two col2 NA NA NA -4 1 File2 file_two col3 NA NA NA -4 2 File2 file_two col3 NA NA NA -4 3 File2 file_two col3 NA NA NA -9 1 File3 file_three col3 NA NA NA -9 2 File3 file_three col3 NA NA NA -9 3 File3 file_three col3 NA NA NA +x y sample_name file_name column_name +1 1 File1 file_one col1 +1 2 File1 file_one col1 +1 3 File1 file_one col1 +3 1 File2 file_two col2 +4 1 File2 file_two col3 +3 2 File2 file_two col2 +4 2 File2 file_two col3 +3 3 File2 file_two col2 +4 3 File2 file_two col3 +9 1 File3 file_three col3 +9 2 File3 file_three col3 +9 3 File3 file_three col3 diff -r 9f7d1ec01767 -r b16b64ca7b7c test-data/123_combine.rdata Binary file test-data/123_combine.rdata has changed diff -r 9f7d1ec01767 -r b16b64ca7b7c test-data/123_combined.RData Binary file test-data/123_combined.RData has changed diff -r 9f7d1ec01767 -r b16b64ca7b7c test-data/123_combined.ibd Binary file test-data/123_combined.ibd has changed diff -r 9f7d1ec01767 -r b16b64ca7b7c test-data/123_combined.imzml --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/123_combined.imzml Fri Dec 13 13:52:13 2019 -0500 @@ -0,0 +1,399 @@ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + diff -r 9f7d1ec01767 -r b16b64ca7b7c test-data/123_combined.imzml.txt --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/123_combined.imzml.txt Fri Dec 13 13:52:13 2019 -0500 @@ -0,0 +1,4 @@ +imzML file: +total 452 +-rw-r--r-- 1 meli meli 436764 Dez 11 00:02 ibd +-rw-r--r-- 1 meli meli 21511 Dez 11 00:02 imzml diff -r 9f7d1ec01767 -r b16b64ca7b7c test-data/123_combined_QC.pdf Binary file test-data/123_combined_QC.pdf has changed diff -r 9f7d1ec01767 -r b16b64ca7b7c test-data/123_combined_auto.ibd Binary file test-data/123_combined_auto.ibd has changed diff -r 9f7d1ec01767 -r b16b64ca7b7c test-data/123_combined_auto.imzml --- a/test-data/123_combined_auto.imzml Fri Mar 22 08:15:15 2019 -0400 +++ b/test-data/123_combined_auto.imzml Fri Dec 13 13:52:13 2019 -0500 @@ -9,8 +9,8 @@ - - + + @@ -22,19 +22,18 @@ - - + - + @@ -43,18 +42,24 @@ - + - - + + + + + + - + + + diff -r 9f7d1ec01767 -r b16b64ca7b7c test-data/123_combined_auto.imzml.txt --- a/test-data/123_combined_auto.imzml.txt Fri Mar 22 08:15:15 2019 -0400 +++ b/test-data/123_combined_auto.imzml.txt Fri Dec 13 13:52:13 2019 -0500 @@ -1,4 +1,4 @@ imzML file: total 452 --rw-r--r-- 1 meli meli 436764 Feb 12 00:51 ibd --rw-r--r-- 1 meli meli 21166 Feb 12 00:51 imzml +-rw-r--r-- 1 meli meli 436764 Dez 11 00:05 ibd +-rw-r--r-- 1 meli meli 21514 Dez 11 00:05 imzml diff -r 9f7d1ec01767 -r b16b64ca7b7c test-data/123_combined_auto.pdf Binary file test-data/123_combined_auto.pdf has changed diff -r 9f7d1ec01767 -r b16b64ca7b7c test-data/123_combined_picked.rdata Binary file test-data/123_combined_picked.rdata has changed diff -r 9f7d1ec01767 -r b16b64ca7b7c test-data/123_combined_picked2.rdata Binary file test-data/123_combined_picked2.rdata has changed diff -r 9f7d1ec01767 -r b16b64ca7b7c test-data/12_annotation_output.tabular --- a/test-data/12_annotation_output.tabular Fri Mar 22 08:15:15 2019 -0400 +++ b/test-data/12_annotation_output.tabular Fri Dec 13 13:52:13 2019 -0500 @@ -1,10 +1,10 @@ -x y sample_name file_name column_name NA.x NA.y NA -1 1 msidata_1.RData file_one col1 NA NA NA -1 2 msidata_1.RData file_one col1 NA NA NA -1 3 msidata_1.RData file_one col1 NA NA NA -7 1 msidata_2.RData file_two col2 NA NA NA -7 2 msidata_2.RData file_two col2 NA NA NA -7 3 msidata_2.RData file_two col2 NA NA NA -8 1 msidata_2.RData file_two col3 NA NA NA -8 2 msidata_2.RData file_two col3 NA NA NA -8 3 msidata_2.RData file_two col3 NA NA NA +x y sample_name file_name column_name +1 1 msidata_1.RData file_one col1 +1 2 msidata_1.RData file_one col1 +1 3 msidata_1.RData file_one col1 +7 1 msidata_2.RData file_two col2 +8 1 msidata_2.RData file_two col3 +7 2 msidata_2.RData file_two col2 +8 2 msidata_2.RData file_two col3 +7 3 msidata_2.RData file_two col2 +8 3 msidata_2.RData file_two col3 diff -r 9f7d1ec01767 -r b16b64ca7b7c test-data/12_combined.RData Binary file test-data/12_combined.RData has changed diff -r 9f7d1ec01767 -r b16b64ca7b7c test-data/12_combined.ibd Binary file test-data/12_combined.ibd has changed diff -r 9f7d1ec01767 -r b16b64ca7b7c test-data/12_combined.imzml --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/12_combined.imzml Fri Dec 13 13:52:13 2019 -0500 @@ -0,0 +1,318 @@ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + diff -r 9f7d1ec01767 -r b16b64ca7b7c test-data/12_combined.imzml.txt --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/12_combined.imzml.txt Fri Dec 13 13:52:13 2019 -0500 @@ -0,0 +1,4 @@ +imzML file: +total 352 +-rw-r--r-- 1 meli meli 335976 Dez 11 00:07 ibd +-rw-r--r-- 1 meli meli 17217 Dez 11 00:07 imzml diff -r 9f7d1ec01767 -r b16b64ca7b7c test-data/12_combined_QC.pdf Binary file test-data/12_combined_QC.pdf has changed diff -r 9f7d1ec01767 -r b16b64ca7b7c test-data/2123_auto_combined.RData Binary file test-data/2123_auto_combined.RData has changed diff -r 9f7d1ec01767 -r b16b64ca7b7c test-data/2123_auto_combined.ibd Binary file test-data/2123_auto_combined.ibd has changed diff -r 9f7d1ec01767 -r b16b64ca7b7c test-data/2123_auto_combined.imzml --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/2123_auto_combined.imzml Fri Dec 13 13:52:13 2019 -0500 @@ -0,0 +1,561 @@ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + diff -r 9f7d1ec01767 -r b16b64ca7b7c test-data/2123_auto_combined.imzml.txt --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/2123_auto_combined.imzml.txt Fri Dec 13 13:52:13 2019 -0500 @@ -0,0 +1,4 @@ +imzML file: +total 656 +-rw-r--r-- 1 meli meli 638340 Dez 11 00:12 ibd +-rw-r--r-- 1 meli meli 30107 Dez 11 00:12 imzml diff -r 9f7d1ec01767 -r b16b64ca7b7c test-data/2123_auto_combined_QC.pdf Binary file test-data/2123_auto_combined_QC.pdf has changed diff -r 9f7d1ec01767 -r b16b64ca7b7c test-data/picked.ibd Binary file test-data/picked.ibd has changed diff -r 9f7d1ec01767 -r b16b64ca7b7c test-data/picked.imzml --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/picked.imzml Fri Dec 13 13:52:13 2019 -0500 @@ -0,0 +1,580 @@ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + diff -r 9f7d1ec01767 -r b16b64ca7b7c test-data/picked.imzml.txt --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/picked.imzml.txt Fri Dec 13 13:52:13 2019 -0500 @@ -0,0 +1,4 @@ +imzML file: +total 192 +-rw-r--r-- 1 meli meli 157984 Dez 11 00:03 ibd +-rw-r--r-- 1 meli meli 35012 Dez 11 00:03 imzml diff -r 9f7d1ec01767 -r b16b64ca7b7c test-data/picked.tabular --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/picked.tabular Fri Dec 13 13:52:13 2019 -0500 @@ -0,0 +1,19 @@ +x y sample_name +1 1 File1 +1 2 File1 +1 3 File1 +3 1 File1 +4 1 File1 +3 2 File1 +4 2 File1 +3 3 File1 +4 3 File1 +11 1 File2 +12 1 File2 +11 2 File2 +12 2 File2 +11 3 File2 +12 3 File2 +17 1 File2 +17 2 File2 +17 3 File2 diff -r 9f7d1ec01767 -r b16b64ca7b7c test-data/picked_QC.pdf Binary file test-data/picked_QC.pdf has changed diff -r 9f7d1ec01767 -r b16b64ca7b7c test-data/xy_coordinates2.tabular --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/xy_coordinates2.tabular Fri Dec 13 13:52:13 2019 -0500 @@ -0,0 +1,2 @@ +0 0 File1 +8 0 File2