diff spectra_plots.xml @ 9:0b7e00e5b9d2 draft

"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cardinal commit 6e8b69ee3aff3c93f745a5de11cc9169130f2e5e"

--- a/spectra_plots.xml	Wed May 13 14:31:42 2020 -0400
+++ b/spectra_plots.xml	Thu Sep 24 11:42:14 2020 +0000
@@ -6,9 +6,9 @@
         <import>macros.xml</import>
     </macros>
     <expand macro="requirements">
-        <requirement type="package" version="3.2.1">r-ggplot2</requirement>
+        <requirement type="package" version="3.3.2">r-ggplot2</requirement>
         <requirement type="package" version="2.3">r-gridextra</requirement>
-        <requirement type="package" version="1.0.0">r-scales</requirement>
+        <requirement type="package" version="1.1.1">r-scales</requirement>
     </expand>
     <command detect_errors="exit_code">
     <![CDATA[
@@ -456,7 +456,7 @@
         <expand macro="reading_msidata"/>
         <expand macro="pdf_filename"/>
         <conditional name="pixel_conditional">
-            <param name="pixel_type" type="select" label="Choose spectra (pixel)">
+            <param name="pixel_type" type="select" label="Choose spectra (pixel) and/or add spectra annotations">
                 <option value="all_pixel" selected="True" >All spectra</option>
                 <option value="tabular_pixel">Single spectra</option>
             </param>
@@ -588,7 +588,7 @@
             <expand macro="processed_infile_imzml"/>
             <conditional name="processed_cond">
                 <param name="processed_file" value="processed"/>
-                <param name="accuracy" value="50"/>
+                <param name="accuracy" value="100"/>
                 <param name="units" value="ppm"/>
             </conditional>
             <conditional name="pixel_conditional">