Mercurial > repos > galaxyp > cravatool
view test-data/noncoding.tsv @ 3:a018c44dc18b draft default tip
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cravatp_score_and_annotate commit d80e60ce74aabe64e131d560085af099d52b81cf-dirty
author | galaxyp |
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date | Fri, 07 Sep 2018 16:53:05 -0400 |
parents | 2c7bcc1219fc |
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#Non-coding Variant Report #2018-09-07 16:42:38.411675 #CRAVAT version: hybrid #Analysis done at http://www.cravat.us. #Job Id: rsajulga_20180907_124216 #Input file: Freebayes_one_variant.vcf #This report shows analysis results at variant level. #hg38 genomic. #Breast #For more information on CRAVAT, visit http://www.cravat.us. Input line ID Chromosome Position Strand Reference base(s) Alternate base(s) Sample ID HUGO symbol Sequence ontology Protein sequence change CHASM p-value CHASM FDR ClinVar COSMIC ID COSMIC variant count (tissue) Number of samples with variant dbSNP ESP6500 AF (average) gnomAD AF Total gnomAD AF African gnomAD AF American gnomAD AF Ashkenazi Jewish gnomAD AF East Asian gnomAD AF Finnish gnomAD AF Non-Finnish European gnomAD AF Other gnomAD AF South Asian GWAS NHLBI Key (GRASP) GWAS PMID (GRASP) GWAS Phenotype (GRASP) Protein 3D variant In TCGA Mutation Cluster ncRNA Class ncRNA Name Pseudogene Pseudogene Transcript Repeat Class Repeat Family Repeat Name TARGET 1000 Genomes AF UTR/Intron UTR/Intron Gene UTR/Intron All Transcript Phred VCF filters Zygosity Alternate reads Total reads Variant allele frequency CGL driver class