Mercurial > repos > galaxyp > custom_pro_db

diff customProDB.R @ 6:2c7df0077d28 draft default tip

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot/custom_pro_db commit 380011a7d342f3c7a2780dfa841adca1f6df1d30
author galaxyp
date Fri, 22 Feb 2019 02:13:31 -0500
parents a3a66063d460
children
line wrap: on
line diff
--- a/customProDB.R	Wed Nov 01 19:33:53 2017 -0400
+++ b/customProDB.R	Fri Feb 22 02:13:31 2019 -0500
@@ -100,9 +100,9 @@
     file.symlink(bai_file, paste(bamLink, ".bai", sep=""))
 
     # load customProDB from GitHub (NOTE: downloading the zip is faster than cloning the repo with git2r or devtools::install_github)
-    download.file("https://github.com/chambm/customProDB/archive/9db2223ef9932e50124b92d1bc49206af1f40fb3.zip", "customProDB.zip", quiet=TRUE)
+    download.file("https://github.com/chambm/customProDB/archive/13cbebf9e3f26507afbbb661c9e985da2fd0840a.zip", "customProDB.zip", quiet=TRUE)
     unzip("customProDB.zip")
-    devtools::load_all("customProDB-9db2223ef9932e50124b92d1bc49206af1f40fb3")
+    devtools::load_all("customProDB-13cbebf9e3f26507afbbb661c9e985da2fd0840a")
 
     easyRun(bamFile=bamLink, vcfFile=vcf_file, annotation_path=getwd(),
             rpkm_cutoff=rpkmCutoff, outfile_path=".", outfile_name="output",