view data_manager/data_manager_eggnog.xml @ 3:5a2ffc486246 draft

"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/eggnog_mapper/eggnog_mapper_data_manager commit e45c15081260025e470d23975ef5a734d3f8fc66"

<tool id="data_manager_eggnog" name="EggNOG DB Download" version="@VERSION@+galaxy1" tool_type="manage_data" profile="18.09">
    <description>eggnog data</description>
    <macros>
        <import>eggnog_macros.xml</import>
    </macros>
    <expand macro="requirements"/>
    <expand macro="version_command"/>
    <command detect_errors="exit_code"><![CDATA[
#import json, os
#set params = json.loads(open(str($out_file)).read())
#set install_path = $params['output_data'][0]['extra_files_path']
@DOWNLOAD_CMD@
    ]]></command>
    <inputs>
        <expand macro="data_manager_params"/>
    </inputs>
    <expand macro="data_manager_outputs"/>
    <tests>
        <expand macro="data_manager_test"/>
    </tests>
    <help><![CDATA[
This tool downloads eggnog data using download_eggnog_data.py
and populates the data tables: eggnog_mapper_db_versioned.
The data is located at: http://eggnog5.embl.de/download/emapperdb-5.0.2/
can vary from 1G to 80G in size.

This will install data relative to the galaxy_data_manager_data_path declared in config/galaxy.yml
in directory eggnog_data/<eggnog data version>/.
The eggnog version is queried from the downloaded SQlite eggnog.db from table version.
    ]]></help>
    <expand macro="citations"/>
</tool>