diff tool-data/eggnog_mapper_db.loc.sample @ 1:269f0970d762 draft

"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/eggnog_mapper/data_manager_eggnog_mapper_abspath commit 2200885b5049b2d952959001c8a9b5ae5c62bee5"
author galaxyp
date Sat, 05 Sep 2020 07:24:42 +0000
parents 9d5f039c637f
children
line wrap: on
line diff
--- a/tool-data/eggnog_mapper_db.loc.sample	Mon Nov 11 11:49:47 2019 -0500
+++ b/tool-data/eggnog_mapper_db.loc.sample	Sat Sep 05 07:24:42 2020 +0000
@@ -1,25 +1,22 @@
 #This is a sample file distributed with Galaxy that enables tools
-#to use a directory of eggnog_mapper data files. 
+#to use a directory of eggnog_mapper data files.
 #
 # eggnog-mapper requires the following files to be installed in the data directory:
 #  https://github.com/jhcepas/eggnog-mapper/blob/master/data/og2level.tsv.gz
-#  http://eggnogdb.embl.de/download/eggnog_4.5/eggnog-mapper-data/eggnog.db.gz
-#  http://eggnogdb.embl.de/download/eggnog_4.5/eggnog-mapper-data/OG_fasta.tar.gz
-# In addition individual HMM DBs can be installed from:
-#  http://eggnogdb.embl.de/download/eggnog_4.5/eggnog-mapper-data/hmmdb_levels/
+#  http://eggnog5.embl.de/download/emapperdb-5.0.0/eggnog.db.gz
 # A complete diamond database is available from:
-#  http://eggnogdb.embl.de/download/eggnog_4.5/eggnog-mapper-data/eggnog_proteins.dmnd.gz
+#  http://eggnog5.embl.de/download/emapperdb-5.0.0/eggnog_proteins.dmnd.gz
 #
-# The python script download_eggnog_data.py, 
+# The python script download_eggnog_data.py,
 # included with eggnog_mapper, can be used to download the files to the correct directory
 #
 # The near-equivalence of columns "value" and "db" is needed for the tests to work,
 # and for the setting of --data_dir to the parent directory of eggnog.db
-# The complicated eggNOG database structure makes passing custom HMM databases somewhat tricky. 
+# The complicated eggNOG database structure makes passing custom HMM databases somewhat tricky.
 # See test-data/cached_locally/eggnog_mapper.loc for how this was done with the included test databases
-# In all other cases, when the appropriate HMM database (for example, "thaNOG") was downloaded from eggnogdb.embl.de, 
+# In all other cases, when the appropriate HMM database (for example, "thaNOG") was downloaded from eggnogdb.embl.de,
 # value and db should be the same (in the example, both should be "thaNOG")
 #
 #
-#db_version	name	path	
-#4.5.1	eggnog_4.5.1	/path/to/directory/that/contains/eggnog.db
+#db_version	name	path
+#5.0	eggnog_5.0	/path/to/directory/that/contains/eggnog.db