Mercurial > repos > galaxyp > data_manager_eggnog_mapper_abspath
diff data_manager/data_manager_eggnog.py @ 3:b711f5b6bd44 draft
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/eggnog_mapper/data_manager_eggnog_mapper_abspath commit fd234f7532b34a1b6ced0d3ac53a8f42348e23f7"
author | galaxyp |
---|---|
date | Fri, 19 Feb 2021 18:54:00 +0000 |
parents | 269f0970d762 |
children | fcb8bdd124f4 |
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--- a/data_manager/data_manager_eggnog.py Sat Sep 05 11:51:21 2020 +0000 +++ b/data_manager/data_manager_eggnog.py Fri Feb 19 18:54:00 2021 +0000 @@ -39,11 +39,18 @@ # params = json.loads(open(args.config_file).read()) dm_dict = {} dm_dict['data_tables'] = dm_dict.get('data_tables', {}) - data_table = 'eggnog_mapper_db' + data_table = 'eggnog_mapper_db_versioned' dm_dict['data_tables'][data_table]\ = dm_dict['data_tables'].get(data_table, []) + # Versionning is super confusing: + # eggnog-mapper 1.* needed a db v4.5 (based on eggnog v4.5) + # eggnog-mapper 2.0 needs a db v2.0 (based on eggnog v5.0) + # db v4.5 are not compatible with eggnog-mapper 2.0 + version = "2.0" + if "4.5" in db_version: + version = "1.0" data_table_entry = dict(value=db_version, name=db_version, - path=args.install_path) + path=args.install_path, version=version) dm_dict['data_tables'][data_table].append(data_table_entry) # save info to json file