view data_manager/data_manager_eggnog.xml @ 3:b711f5b6bd44 draft

"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/eggnog_mapper/data_manager_eggnog_mapper_abspath commit fd234f7532b34a1b6ced0d3ac53a8f42348e23f7"

<tool id="data_manager_eggnog_abspath" name="EggNOG DB Download" version="@VERSION@+galaxy1" tool_type="manage_data" profile="18.09">
    <description>eggnog data to a specified directory</description>
    <macros>
        <import>eggnog_macros.xml</import>
    </macros>
    <expand macro="requirements"/>
    <expand macro="version_command"/>
    <command detect_errors="exit_code"><![CDATA[
#set $install_path = $target_path
@DOWNLOAD_CMD@
    ]]></command>
    <inputs>
        <param name="target_path" type="text" value="" label="Download Destination"
            help="Full path to where the eggnod data should be installed.">
            <validator type="regex" message="Must be an absolute path">^/.*$</validator>
        </param>
        <expand macro="data_manager_params"/>
    </inputs>
    <expand macro="data_manager_outputs"/>
    <tests>
        <expand macro="data_manager_test">
            <param name="target_path" value="/tmp" /> <!-- Not used in test mode -->
        </expand>
    </tests>
    <help><![CDATA[
This tool downloads eggnog data using download_eggnog_data.py
and populates the data tables: eggnog_mapper_db_versioned.
The data is located at: http://eggnog5.embl.de/download/emapperdb-5.0.0/
can vary from 1G to 80G in size.

The data will be downloaded to the specified directory.
You should not mix eggnog data versions in the same directory.
    ]]></help>
    <expand macro="citations"/>
</tool>