# HG changeset patch
# User galaxyp
# Date 1701337312 0
# Node ID bf0728e000cdb543afae116cf4685e774b3c8c12
# Parent ae4dc0c041f901af560d69bcd5bda2814ddb16b6
planemo upload for repository https://github.com/vdemichev/DiaNN commit 3ff8be11f0be7b9ea486577896ded0a806d9d7ee
diff -r ae4dc0c041f9 -r bf0728e000cd diann.xml
--- a/diann.xml Mon Oct 02 14:15:42 2023 +0000
+++ b/diann.xml Thu Nov 30 09:41:52 2023 +0000
@@ -2,7 +2,7 @@
is a software for DIA/SWATH data processing
1.8.1
- 1
+ 2
biocontainers/diann:v@TOOL_VERSION@_cv1
@@ -29,13 +29,17 @@
#set $fasta_file_str += '--fasta ' + str($fasta_file) + ' '
#end for
+ #if $input.spectral_lib_options.lib
+ ln -s '$input.spectral_lib_options.lib' './input_data/report-lib.predicted.speclib' &&
+ #end if
+
diann
#if $input.f != 'None'
'$infiles_str'
#end if
--dir ./
#if $input.spectral_lib_options.lib
- --lib '$input.spectral_lib_options.lib'
+ --lib './input_data/report-lib.predicted.speclib'
#else
--lib
#end if
@@ -464,6 +468,24 @@
+
+
+
+
+