Mercurial > repos > galaxyp > digestdb
comparison digestdb.xml @ 1:60cac732cde4 draft default tip
fixed error in version
| author | galaxyp |
|---|---|
| date | Thu, 20 Jun 2013 16:34:19 -0400 |
| parents | e27d4f0f4b01 |
| children |
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| 0:e27d4f0f4b01 | 1:60cac732cde4 |
|---|---|
| 1 <tool id="digestdb" version="0.1.0" name="Digest Database"> | 1 <tool id="digestdb" version="0.1.0" name="Digest Database"> |
| 2 <description>Perform a theoretical digest of a protein database.</description> | 2 <description>Perform a theoretical digest of a protein database.</description> |
| 3 <requirements> | 3 <requirements> |
| 4 <requirement type="package">transproteomic_pipeline</requirement> | 4 <requirement type="package" version="4.6.1">trans_proteomic_pipeline</requirement> |
| 5 </requirements> | 5 </requirements> |
| 6 <command> | 6 <command> |
| 7 digestdb -m$missed_cleavages -l$min_mass -h$max_mass -r${str($enzyme).split(":")[0]} -n${str($enzyme).split(":")[1]} $sequences > $output | 7 digestdb -m$missed_cleavages -l$min_mass -h$max_mass -r${str($enzyme).split(":")[0]} -n${str($enzyme).split(":")[1]} $sequences > $output |
| 8 </command> | 8 </command> |
| 9 <inputs> | 9 <inputs> |