Mercurial > repos > galaxyp > eggnog_mapper
comparison test-data/make_comp_file.sh @ 6:3cb37af59360 draft
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/eggnog_mapper/eggnog_mapper commit 2200885b5049b2d952959001c8a9b5ae5c62bee5"
author | galaxyp |
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date | Sat, 05 Sep 2020 07:21:28 +0000 |
parents | f4e5279b5d10 |
children |
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5:a5a3bdd0954b | 6:3cb37af59360 |
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1 #!/bin/bash | 1 #!/bin/bash |
2 | 2 |
3 base_path=$1 | 3 base_path=$1 |
4 | |
5 emapper.py \ | |
6 -i $base_path/test-data/nlim_fragment.fasta \ | |
7 --output HMM_nlim \ | |
8 --output_dir $base_path/test-data \ | |
9 --override \ | |
10 --database $base_path/test-data/cached_locally/hmmdb_levels/ENOG411CB2I/ENOG411CB2I \ | |
11 --data_dir $base_path/test-data/cached_locally \ | |
12 --no_refine\ | |
13 --no_annot \ | |
14 --no_file_comments | |
15 | 4 |
16 emapper.py \ | 5 emapper.py \ |
17 -i $base_path/test-data/nlim_fragment.fasta \ | 6 -i $base_path/test-data/nlim_fragment.fasta \ |
18 --output DIA_nlim \ | 7 --output DIA_nlim \ |
19 --output_dir $base_path/test-data \ | 8 --output_dir $base_path/test-data \ |