comparison eggnog_macros.xml @ 7:4e4c6329f6cd draft

"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/eggnog_mapper/eggnog_mapper commit fd234f7532b34a1b6ced0d3ac53a8f42348e23f7"

6:3cb37af59360

<?xml version="1.0"?>
<macros>
   <token name="@VERSION@">2.0.1</token>
   <token name="@EGGNOG_DB_VERSION@">5.0</token>
   <xml name="citations">
        <citations>
            <citation type="doi">10.1093/nar/gkv1248</citation>
            <citation type="doi">10.1093/molbev/msx148</citation>
        </citations>

            <param name="test" value="true"/>
            <param name="diamond_database" value="true"/>
            <yield />
            <output name="out_file">
                <assert_contents>
                    <has_text text="eggnog_mapper_db" />
                    <has_text text="@EGGNOG_DB_VERSION@" />
                </assert_contents>
            </output>
        </test>
    </xml>

7:4e4c6329f6cd

<?xml version="1.0"?>
<macros>
   <token name="@VERSION@">2.0.1</token>
   <token name="@EGGNOG_DB_VERSION@">2.0</token>
    <!--
    # Versionning is super confusing:
    # eggnog-mapper 1.* needed a db v4.5 (based on eggnog v4.5)
    # eggnog-mapper 2.0 needs a db v2.0 (based on eggnog v5.0)
    # db v4.5 are not compatible with eggnog-mapper 2.0
    -->
   <token name="@IDX_VERSION@">2.0</token>
   <xml name="citations">
        <citations>
            <citation type="doi">10.1093/nar/gkv1248</citation>
            <citation type="doi">10.1093/molbev/msx148</citation>
        </citations>

            <param name="test" value="true"/>
            <param name="diamond_database" value="true"/>
            <yield />
            <output name="out_file">
                <assert_contents>
                    <has_text text="eggnog_mapper_db_versioned" />
                    <has_text text="@EGGNOG_DB_VERSION@" />
                </assert_contents>
            </output>
        </test>
    </xml>