Mercurial > repos > galaxyp > eggnog_mapper

comparison eggnog_mapper.xml @ 9:63662ae295d6 draft

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"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/eggnog_mapper/eggnog_mapper commit d08008686fd3cace19449ac950c4e0864b7a8ef8"
author galaxyp
date Sun, 13 Feb 2022 15:29:04 +0000
parents 96cac424c870
children bcb4895b8b55
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8:96cac424c870 9:63662ae295d6
12 --itype '${input_trans.itype}' 12 --itype '${input_trans.itype}'
13 #if $input_trans.itype in ['CDS', 'genome', 'metagenome']: 13 #if $input_trans.itype in ['CDS', 'genome', 'metagenome']:
14 $input_trans.translate 14 $input_trans.translate
15 #end if 15 #end if
16 #if $input_trans.itype in ['genome', 'metagenome']: 16 #if $input_trans.itype in ['genome', 'metagenome']:
17 $input_trans.genepred 17 --genepred $input_trans.genepred
18 #end if 18 #end if
19 19
20 ## Diamond option 20 ## Diamond option
21 #if $seed_ortho_options.ortho_method.m == "diamond": 21 #if $seed_ortho_options.ortho_method.m == "diamond":
22 --matrix '$seed_ortho_options.ortho_method.matrix_gapcosts.matrix' 22 --matrix '$seed_ortho_options.ortho_method.matrix_gapcosts.matrix'