Mercurial > repos > galaxyp > eggnog_mapper
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planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/eggnog_mapper/eggnog_mapper commit 192779247c3385704ebd98a2cc47a210fb1f4d0c
author | galaxyp |
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date | Thu, 07 Sep 2023 18:51:23 +0000 |
parents | 96cac424c870 |
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#This is a sample file distributed with Galaxy that enables tools #to use a directory of eggnog_mapper data files. # # eggnog-mapper requires the following files to be installed in the data directory: # https://github.com/jhcepas/eggnog-mapper/blob/master/data/og2level.tsv.gz # http://eggnog5.embl.de/download/emapperdb-5.0.2/eggnog.db.gz # A complete diamond database is available from: # http://eggnog5.embl.de/download/emapperdb-5.0.2/eggnog_proteins.dmnd.gz # # The python script download_eggnog_data.py, # included with eggnog_mapper, can be used to download the files to the correct directory # # The near-equivalence of columns "value" and "db" is needed for the tests to work, # and for the setting of --data_dir to the parent directory of eggnog.db # The complicated eggNOG database structure makes passing custom HMM databases somewhat tricky. # See test-data/cached_locally/eggnog_mapper.loc for how this was done with the included test databases # In all other cases, when the appropriate HMM database (for example, "thaNOG") was downloaded from eggnogdb.embl.de, # value and db should be the same (in the example, both should be "thaNOG") # # #db_version name path #5.0 eggnog_5.0 /path/to/directory/that/contains/eggnog.db