Mercurial > repos > galaxyp > flashlfq

diff test-data/aggregatePSMs_5ppmAroundZero.psmtsv @ 4:908ab13490dc draft

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planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/flashlfq commit 047addefbac7468a92ba4fc04899bd5136c58ea4
author galaxyp
date Wed, 30 Jan 2019 05:39:17 -0500
parents 6d3560a3a548
children
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--- a/test-data/aggregatePSMs_5ppmAroundZero.psmtsv	Fri Jan 26 09:08:09 2018 -0500
+++ b/test-data/aggregatePSMs_5ppmAroundZero.psmtsv	Wed Jan 30 05:39:17 2019 -0500
@@ -1,5 +1,5 @@
-File Name	Scan Number	Scan Retention Time	Num Experimental Peaks	Total Ion Current	Precursor Scan Number	Precursor Charge	Precursor MZ	Precursor Intensity	Precursor Mass	Score	Notch	Quantification Intensity	Ambiguous Matches	Protein Accession	Protein Name	Peptide Description	Start and End Residues In Protein	Previous Amino Acid	Next Amino Acid	Base Sequence	Full Sequence	Variable Mods	Matched Ion Counts	Matched Ion Masses	Localized Scores	Missed Cleavages	Peptide Monoisotopic Mass	Decoy/Contaminant/Target	Improvement Possible	Mass Diff (Da)	Mass Diff (ppm)Cumulative Target	Cumulative Decoy	QValue	Cumulative Target Notch	Cumulative Decoy Notch	QValue Notch
-sliced-raw	36	94.12193	13.00000	2929925.75000	34	2.00000	676.33484	3555206.50000	1350.65512	1.098	0.000	0	0.00000	P34223	UBX1_YEAST UBX domain-containing protein 1	full	[242 to 253]	K	Y	EGFQVADGPLYR	EGFQVADGPLYR	0	0;1	[[];[604.33330];]	[1.098,1.098,1.098,1.098,1.098,1.098,1.098,1.098,1.098,1.098,1.098,1.098]	0	1350.65681	T	0.000	-0.00169	-1.251201	0	0.000000	1	0	0.000000
-sliced-mzml	36	94.12193	13.00000	2929925.75000	34	2.00000	676.33484	3555188.00000	1350.65512	1.098	0.000	0	0.00000	P34223	UBX1_YEAST UBX domain-containing protein 1	full	[242 to 253]	K	Y	EGFQVADGPLYR	EGFQVADGPLYR	0	0;1	[[];[604.33330];]	[1.098,1.098,1.098,1.098,1.098,1.098,1.098,1.098,1.098,1.098,1.098,1.098]	0	1350.65681	T	0.000	-0.00169	-1.251202	0	0.000000	2	0	0.000000
-sliced-raw	25	94.05811	12.00000	2664486.50000	23	2.00000	676.33521	2498743.50000	1350.65586	1.094	0.000	0	0.00000	P34223	UBX1_YEAST UBX domain-containing protein 1	full	[242 to 253]	K	Y	EGFQVADGPLYR	EGFQVADGPLYR	0	0;1	[[];[604.33330];]	[1.094,1.094,1.094,1.094,1.094,1.094,1.094,1.094,1.094,1.094,1.094,1.094]	0	1350.65681	T	0.000	-0.00096	-0.708933	0	0.000000	3	0	0.000000
-sliced-mzml	25	94.05811	12.00000	2664486.50000	23	2.00000	676.33484	2493913.00000	1350.65512	1.094	0.000	0	0.00000	P34223	UBX1_YEAST UBX domain-containing protein 1	full	[242 to 253]	K	Y	EGFQVADGPLYR	EGFQVADGPLYR	0	0;1	[[];[604.33330];]	[1.094,1.094,1.094,1.094,1.094,1.094,1.094,1.094,1.094,1.094,1.094,1.094]	0	1350.65681	T	0.000	-0.00169	-1.251204	0	0.000000	4	0	0.000000
+File Name	Scan Number	Scan Retention Time	Num Experimental Peaks	Total Ion Current	Precursor Scan Number	Precursor Charge	Precursor MZ	Precursor Intensity	Precursor Mass	Score	Notch	Quantification Intensity	Ambiguous Matches	Protein Accession	Protein Name	Peptide Description	Start and End Residues In Protein	Previous Amino Acid	Next Amino Acid	Base Sequence	Full Sequence	Variable Mods	Matched Ion Counts	Matched Ion Masses	Localized Scores	Missed Cleavages	Peptide Monoisotopic Mass	Decoy/Contaminant/Target	Improvement Possible	Mass Diff (Da)	Mass Diff (ppm)Cumulative Target	Cumulative Decoy	QValue	Cumulative Target Notch	Cumulative Decoy Notch	QValue Notch
+sliced-raw	36	94.12193	13.00000	2929925.75000	34	2.00000	676.33484	3555206.50000	1350.65512	1.098	0.000	0	0.00000	P34223	UBX1_YEAST UBX domain-containing protein 1	full	[242 to 253]	K	Y	EGFQVADGPLYR	EGFQVADGPLYR	0	0;1	[[];[604.33330];]	[1.098,1.098,1.098,1.098,1.098,1.098,1.098,1.098,1.098,1.098,1.098,1.098]	0	1350.65681	T	0.000	-0.00169	-1.251201	0	0.000000	1	0	0.000000
+sliced-mzml	36	94.12193	13.00000	2929925.75000	34	2.00000	676.33484	3555188.00000	1350.65512	1.098	0.000	0	0.00000	P34223	UBX1_YEAST UBX domain-containing protein 1	full	[242 to 253]	K	Y	EGFQVADGPLYR	EGFQVADGPLYR	0	0;1	[[];[604.33330];]	[1.098,1.098,1.098,1.098,1.098,1.098,1.098,1.098,1.098,1.098,1.098,1.098]	0	1350.65681	T	0.000	-0.00169	-1.251202	0	0.000000	2	0	0.000000
+sliced-raw	25	94.05811	12.00000	2664486.50000	23	2.00000	676.33521	2498743.50000	1350.65586	1.094	0.000	0	0.00000	P34223	UBX1_YEAST UBX domain-containing protein 1	full	[242 to 253]	K	Y	EGFQVADGPLYR	EGFQVADGPLYR	0	0;1	[[];[604.33330];]	[1.094,1.094,1.094,1.094,1.094,1.094,1.094,1.094,1.094,1.094,1.094,1.094]	0	1350.65681	T	0.000	-0.00096	-0.708933	0	0.000000	3	0	0.000000
+sliced-mzml	25	94.05811	12.00000	2664486.50000	23	2.00000	676.33484	2493913.00000	1350.65512	1.094	0.000	0	0.00000	P34223	UBX1_YEAST UBX domain-containing protein 1	full	[242 to 253]	K	Y	EGFQVADGPLYR	EGFQVADGPLYR	0	0;1	[[];[604.33330];]	[1.094,1.094,1.094,1.094,1.094,1.094,1.094,1.094,1.094,1.094,1.094,1.094]	0	1350.65681	T	0.000	-0.00169	-1.251204	0	0.000000	4	0	0.000000