Mercurial > repos > galaxyp > fragpipe
comparison fragpipe.xml @ 3:da9ebef968bd draft
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/fragpipe commit b1b03bb7cd31c1ec806b286d6c9444428b358e15
| author | galaxyp |
|---|---|
| date | Thu, 12 Sep 2024 08:06:44 +0000 |
| parents | 14785481da2b |
| children | e969a182e3cb |
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| 2:ef46866326ef | 3:da9ebef968bd |
|---|---|
| 152 <test expect_num_outputs="11"> | 152 <test expect_num_outputs="11"> |
| 153 <param name="inputs" value="default/test1.mzML,default/test2.mzML" ftype="mzml"/> | 153 <param name="inputs" value="default/test1.mzML,default/test2.mzML" ftype="mzml"/> |
| 154 <param name="database_name" value="default/test.fasta" ftype="fasta"/> | 154 <param name="database_name" value="default/test.fasta" ftype="fasta"/> |
| 155 <param name="manifest" value="default/test.manifest" ftype="tabular"/> | 155 <param name="manifest" value="default/test.manifest" ftype="tabular"/> |
| 156 <param name="workflow_name" value="Default"/> | 156 <param name="workflow_name" value="Default"/> |
| 157 <param name="label_free_quantification_run" value="ionquant"/> | |
| 157 <param name="output_options" value="workflow,log,combined_outputs,concatenated_outputs"/> | 158 <param name="output_options" value="workflow,log,combined_outputs,concatenated_outputs"/> |
| 158 <param name="license_agreements" value="true"/> | 159 <param name="license_agreements" value="true"/> |
| 159 <output name="concat_psm_tsv" ftype="tabular"> | 160 <output name="concat_psm_tsv" ftype="tabular"> |
| 160 <assert_contents> | 161 <assert_contents> |
| 161 <has_text text="Experiment	Spectrum	Spectrum File	Peptide	Modified Peptide	Extended Peptide	Prev AA	Next AA	Peptide Length	Charge	Retention	Observed Mass	Calibrated Observed Mass	Observed M/Z	Calibrated Observed M/Z	Calculated Peptide Mass	Calculated M/Z	Delta Mass	Expectation	Hyperscore	Nextscore	PeptideProphet Probability	Number of Enzymatic Termini	Number of Missed Cleavages	Protein Start	Protein End	Intensity	Assigned Modifications	Observed Modifications	Purity	Is Unique	Protein	Protein ID	Entry Name	Gene	Protein Description	Mapped Genes	Mapped Proteins"/> | 162 <has_text text="Experiment	Spectrum	Spectrum File	Peptide	Modified Peptide	Extended Peptide	Prev AA	Next AA	Peptide Length	Charge	Retention	Observed Mass	Calibrated Observed Mass	Observed M/Z	Calibrated Observed M/Z	Calculated Peptide Mass	Calculated M/Z	Delta Mass	Expectation	Hyperscore	Nextscore	PeptideProphet Probability	Number of Enzymatic Termini	Number of Missed Cleavages	Protein Start	Protein End	Intensity	Assigned Modifications	Observed Modifications	Purity	Is Unique	Protein	Protein ID	Entry Name	Gene	Protein Description	Mapped Genes	Mapped Proteins"/> |