Mercurial > repos > galaxyp > fragpipe
diff macros.xml @ 3:da9ebef968bd draft
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/fragpipe commit b1b03bb7cd31c1ec806b286d6c9444428b358e15
author | galaxyp |
---|---|
date | Thu, 12 Sep 2024 08:06:44 +0000 |
parents | ef46866326ef |
children | e969a182e3cb |
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--- a/macros.xml Tue Jul 16 06:55:53 2024 +0000 +++ b/macros.xml Thu Sep 12 08:06:44 2024 +0000 @@ -1,7 +1,7 @@ <macros> <import>msfragger_macros.xml</import> <token name="@TOOL_VERSION@">20.0</token> - <token name="@VERSION_SUFFIX@">2</token> + <token name="@VERSION_SUFFIX@">3</token> <xml name="requirements"> <requirements> <requirement type="package" version="@TOOL_VERSION@">fragpipe</requirement> @@ -719,7 +719,7 @@ <when value="no"/> <when value="ionquant"> <section name="ionquant" expanded="false" title="IonQuant Label-Free Quantification"> - <param name="mbr" type="select" optional="true" label="Match between runs (MBR)" help="ionquant.mbr"> + <param name="mbr_select" type="select" optional="true" label="Match between runs (MBR)" help="ionquant.mbr"> <option value="0">No</option> <option value="1">Yes</option> </param> @@ -821,11 +821,8 @@ #set $wfdict['ionquant.run-ionquant'] = 'true' #set $wfdict['freequant.run-freequant'] = 'false' #set $cxt = $prfx.ionquant - #if $cxt.mbr != 'None' - #set $wfdict['ionquant.mbr'] = $cxt.mbr - #end if - #if $cxt.maxlfqbr is not None - #set $wfdict['ionquant.maxlfqbr'] = $cxt.maxlfqbr + #if $cxt.mbr_select != 'None' + #set $wfdict['ionquant.mbr'] = $cxt.mbr_select #end if #if $cxt.normalization != 'None' #set $wfdict['ionquant.normalization'] = $cxt.normalization