Mercurial > repos > galaxyp > gffcompare_to_bed
comparison gffcompare_to_bed.py @ 3:ba5368c19dbd draft default tip
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/gffcompare_to_bed commit 98ac160e172e3a404163c1af8e2d5ae42a2b425d"
| author | galaxyp |
|---|---|
| date | Wed, 13 Jan 2021 20:59:52 +0000 |
| parents | 9a4cfc910674 |
| children |
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| 2:9a4cfc910674 | 3:ba5368c19dbd |
|---|---|
| 42 elif isinstance(blockStarts, list): | 42 elif isinstance(blockStarts, list): |
| 43 self.blockStarts = [int(x) for x in blockStarts] | 43 self.blockStarts = [int(x) for x in blockStarts] |
| 44 else: | 44 else: |
| 45 self.blockStarts = blockStarts | 45 self.blockStarts = blockStarts |
| 46 | 46 |
| 47 def sort_exons(self): | |
| 48 sorted_list = [i for i in sorted(zip(self.blockStarts,self.blockSizes))] | |
| 49 self.blockStarts = [i[0] for i in sorted_list] | |
| 50 self.blockSizes = [i[1] for i in sorted_list] | |
| 51 | |
| 47 def __str__(self): | 52 def __str__(self): |
| 53 self.sort_exons() | |
| 48 return '%s\t%d\t%d\t%s\t%d\t%s\t%d\t%d\t%s\t%d\t%s\t%s' % ( | 54 return '%s\t%d\t%d\t%s\t%d\t%s\t%d\t%d\t%s\t%d\t%s\t%s' % ( |
| 49 self.chrom, self.chromStart, self.chromEnd, | 55 self.chrom, self.chromStart, self.chromEnd, |
| 50 self.name, self.score, self.strand, | 56 self.name, self.score, self.strand, |
| 51 self.thickStart, self.thickEnd, str(self.itemRgb), self.blockCount, | 57 self.thickStart, self.thickEnd, str(self.itemRgb), self.blockCount, |
| 52 ','.join([str(x) for x in self.blockSizes]), | 58 ','.join([str(x) for x in self.blockSizes]), |