Mercurial > repos > galaxyp > gffcompare_to_bed
changeset 0:7e572e148175 draft
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/gffcompare_to_bed commit 321b217382f6be33bd77c7dbb51c8caf5fa50afe
| author | galaxyp |
|---|---|
| date | Thu, 11 Jan 2018 11:16:51 -0500 |
| parents | |
| children | 0f62097d7c1a |
| files | gffcompare_to_bed.py gffcompare_to_bed.xml test-data/gffcompare_annotated.gtf test-data/gffcompare_output.bed test-data/gffcompare_output_j.bed test-data/gffcompare_output_jeipux.bed |
| diffstat | 6 files changed, 1395 insertions(+), 0 deletions(-) [+] |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/gffcompare_to_bed.py Thu Jan 11 11:16:51 2018 -0500 @@ -0,0 +1,132 @@ +#!/usr/bin/env python +""" +# +#------------------------------------------------------------------------------ +# University of Minnesota +# Copyright 2017, Regents of the University of Minnesota +#------------------------------------------------------------------------------ +# Author: +# +# James E Johnson +# +#------------------------------------------------------------------------------ +""" + +import argparse +import sys + + +class BedEntry(object): + def __init__(self, chrom=None, chromStart=None, chromEnd=None, + name=None, score=None, strand=None, + thickStart=None, thickEnd=None, itemRgb=None, + blockCount=None, blockSizes=None, blockStarts=None): + self.chrom = chrom + self.chromStart = int(chromStart) + self.chromEnd = int(chromEnd) + self.name = name + self.score = int(score) if score is not None else 0 + self.strand = '-' if str(strand).startswith('-') else '+' + self.thickStart = int(thickStart) if thickStart else self.chromStart + self.thickEnd = int(thickEnd) if thickEnd else self.chromEnd + self.itemRgb = str(itemRgb) if itemRgb is not None else r'100,100,100' + self.blockCount = int(blockCount) + if isinstance(blockSizes, str) or isinstance(blockSizes, unicode): + self.blockSizes = [int(x) for x in blockSizes.split(',')] + elif isinstance(blockSizes, list): + self.blockSizes = [int(x) for x in blockSizes] + else: + self.blockSizes = blockSizes + if isinstance(blockStarts, str) or isinstance(blockSizes, unicode): + self.blockStarts = [int(x) for x in blockStarts.split(',')] + elif isinstance(blockStarts, list): + self.blockStarts = [int(x) for x in blockStarts] + else: + self.blockStarts = blockStarts + + def __str__(self): + return '%s\t%d\t%d\t%s\t%d\t%s\t%d\t%d\t%s\t%d\t%s\t%s' % ( + self.chrom, self.chromStart, self.chromEnd, + self.name, self.score, self.strand, + self.thickStart, self.thickEnd, str(self.itemRgb), self.blockCount, + ','.join([str(x) for x in self.blockSizes]), + ','.join([str(x) for x in self.blockStarts])) + + +def __main__(): + parser = argparse.ArgumentParser( + description='Retrieve Ensembl cDNAs and three frame translate') + parser.add_argument( + 'input', + help='GFFCompare annotated GTF file, (-) for stdin') + parser.add_argument( + 'output', + help='BED file, (-) for stdout') + parser.add_argument( + '-C', '--class_code', action='append', default=[], + help='Restrict output to gffcompare class codes') + parser.add_argument('-d', '--debug', action='store_true', help='Debug') + args = parser.parse_args() + + # print >> sys.stderr, "args: %s" % args + input_rdr = open(args.input, 'r') if args.input != '-' else sys.stdin + output_wtr = open(args.output, 'w') if args.output != '-' else sys.stdout + + def write_bed_entry(bed): + if bed.blockCount == 0: + bed.blockCount = 1 + output_wtr.write("%s\n" % str(bed)) + + class_codes = [c.strip() for codes in args.class_code + for c in codes.split(',')] if args.class_code else None + bed = None + class_code = None + for i, line in enumerate(input_rdr): + if line.startswith('#'): + continue + fields = line.rstrip('\r\n').split('\t') + if len(fields) != 9: + continue + (seqname, source, feature, start, end, + score, strand, frame, attributes) = fields + attribute = {i[0]: i[1].strip('"') for i in [j.strip().split(' ') + for j in attributes.rstrip(';').split(';')]} + if feature == 'transcript': + if args.debug: + print >> sys.stderr, "%s\t%s"\ + % ('\t'.join([seqname, source, feature, + start, end, score, strand, frame]), + attribute) + if bed is not None: + write_bed_entry(bed) + bed = None + class_code = attribute['class_code'].strip('"')\ + if 'class_code' in attribute else None + if class_codes and class_code not in class_codes: + continue + chromStart = int(start) - 1 + chromEnd = int(end) + cat = '_' + class_code if class_code and class_code != '=' else '' + bed = BedEntry(chrom=seqname, + chromStart=chromStart, chromEnd=chromEnd, + name=attribute['transcript_id'] + cat, + strand=strand, + blockCount=0, + blockSizes=[chromEnd - chromStart], + blockStarts=[0]) + elif feature == 'exon' and bed is not None: + chromStart = int(start) - 1 + chromEnd = int(end) + blockSize = chromEnd - chromStart + if bed.blockCount == 0: + bed.blockSizes = [] + bed.blockStarts = [] + bed.blockSizes.append(blockSize) + bed.blockStarts.append(chromStart - bed.chromStart) + bed.blockCount += 1 + if bed is not None: + write_bed_entry(bed) + + +if __name__ == "__main__": + __main__()
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/gffcompare_to_bed.xml Thu Jan 11 11:16:51 2018 -0500 @@ -0,0 +1,66 @@ +<tool id="gffcompare_to_bed" name="Convert gffCompare annotated GTF to BED" version="0.1.0"> + <description>for StringTie results</description> + <command detect_errors="exit_code"><![CDATA[ + python '$__tool_directory__/gffcompare_to_bed.py' + #if $class_codes: + --class_code='$class_codes' + #end if + $input $output + ]]></command> + <inputs> + <param name="input" type="data" format="gtf" label="GTF annotated by gffCompare"/> + <param name="class_codes" type="select" display="checkboxes" multiple="true" optional="true" + label="filter gffCompare class_codes to convert" help="No selection implies no filtering"> + <option value="=">= : Complete match of intron chain</option> + <option value="c">c : Contained</option> + <option value="j">j : Potentially novel isoform (fragment): at least one splice junction is shared with a reference transcript</option> + <option value="e">e : Single exon transfrag overlapping a reference exon and at least 10 bp of a reference intron, indicating a possible pre-mRNA fragment.</option> + <option value="i">i : A transfrag falling entirely within a reference intron</option> + <option value="o">o : Generic exonic overlap with a reference transcript</option> + <option value="p">p : Possible polymerase run-on fragment (within 2Kbases of a reference transcript)</option> + <option value="r">r : Repeat. Currently determined by looking at the soft-masked reference sequence and applied to transcripts where at least 50% of the bases are lower case</option> + <option value="u">u : Unknown, intergenic transcript</option> + <option value="x">x : Exonic overlap with reference on the opposite strand</option> + <option value="s">s : An intron of the transfrag overlaps a reference intron on the opposite strand (likely due to read mapping errors)</option> + </param> + </inputs> + <outputs> + <data name="output" format="bed" /> + </outputs> + <tests> + <test> + <param name="input" value="gffcompare_annotated.gtf" ftype="gtf"/> + <output name="output" file="gffcompare_output.bed"/> + </test> + <test> + <param name="input" value="gffcompare_annotated.gtf" ftype="gtf"/> + <param name="class_codes" value="j"/> + <output name="output" file="gffcompare_output_j.bed"/> + </test> + <test> + <param name="input" value="gffcompare_annotated.gtf" ftype="gtf"/> + <param name="class_codes" value="j,e,i,p,u,x"/> + <output name="output" file="gffcompare_output_jeipux.bed"/> + </test> + + </tests> + <help><![CDATA[ +Convert a GFFCompare annotated GTF file to BED format. + +usage: gffcompare_to_bed.py [-h] [-C CLASS_CODE] [-v] [-d] input output + +positional arguments: + input GFFCompare annotated GTF file, (-) for stdin + output BED file, (-) for stdout + +optional arguments: + -h, --help show this help message and exit + -C CLASS_CODE, --class_code CLASS_CODE + Restrict output to gffcompare class codes + -d, --debug Debug + + ]]></help> + <citations> + <citation type="doi">10.1038/nbt.1621</citation> + </citations> +</tool>
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/gffcompare_annotated.gtf Thu Jan 11 11:16:51 2018 -0500 @@ -0,0 +1,1024 @@ +1 StringTie exon 43778515 43778980 . - . transcript_id "STRG.1163.3"; gene_id "STRG.1163"; exon_number "2"; +1 StringTie transcript 43776567 43778980 . - . transcript_id "STRG.1163.2"; gene_id "STRG.1163"; gene_name "Uxs1"; xloc "XLOC_000439"; cmp_ref "ENSMUST00000126008"; class_code "i"; tss_id "TSS1162"; +1 StringTie exon 43776567 43777660 . - . transcript_id "STRG.1163.2"; gene_id "STRG.1163"; exon_number "1"; +1 StringTie exon 43778515 43778758 . - . transcript_id "STRG.1163.2"; gene_id "STRG.1163"; exon_number "2"; +1 StringTie exon 43778881 43778980 . - . transcript_id "STRG.1163.2"; gene_id "STRG.1163"; exon_number "3"; +1 StringTie transcript 43776567 43778980 . - . transcript_id "STRG.1163.1"; gene_id "STRG.1163"; gene_name "Uxs1"; xloc "XLOC_000439"; cmp_ref "ENSMUST00000126008"; class_code "i"; tss_id "TSS1162"; +1 StringTie exon 43776567 43777721 . - . transcript_id "STRG.1163.1"; gene_id "STRG.1163"; exon_number "1"; +1 StringTie exon 43778454 43778575 . - . transcript_id "STRG.1163.1"; gene_id "STRG.1163"; exon_number "2"; +1 StringTie exon 43778881 43778980 . - . transcript_id "STRG.1163.1"; gene_id "STRG.1163"; exon_number "3"; +1 StringTie transcript 45331687 45332998 . + . transcript_id "STRG.1209.1"; gene_id "STRG.1209"; gene_name "Col3a1"; xloc "XLOC_000069"; cmp_ref "ENSMUST00000087883"; class_code "c"; tss_id "TSS174"; +1 StringTie exon 45331687 45331776 . + . transcript_id "STRG.1209.1"; gene_id "STRG.1209"; exon_number "1"; +1 StringTie exon 45331973 45332026 . + . transcript_id "STRG.1209.1"; gene_id "STRG.1209"; exon_number "2"; +1 StringTie exon 45332135 45332242 . + . transcript_id "STRG.1209.1"; gene_id "STRG.1209"; exon_number "3"; +1 StringTie exon 45332965 45332998 . + . transcript_id "STRG.1209.1"; gene_id "STRG.1209"; exon_number "4"; +1 StringTie transcript 6453837 6460700 . + . transcript_id "STRG.88.1"; gene_id "STRG.88"; xloc "XLOC_000004"; class_code "u"; tss_id "TSS16"; +1 StringTie exon 6453837 6453886 . + . transcript_id "STRG.88.1"; gene_id "STRG.88"; exon_number "1"; +1 StringTie exon 6460545 6460700 . + . transcript_id "STRG.88.1"; gene_id "STRG.88"; exon_number "2"; +1 StringTie transcript 86703819 87050095 . + . transcript_id "STRG.2299.1"; gene_id "STRG.2299"; gene_name "Dis3l2"; xloc "XLOC_000165"; ref_gene_id "ENSMUSG00000053333"; cmp_ref "ENSMUST00000168237"; class_code "="; tss_id "TSS424"; p_id "P253"; +1 StringTie exon 86703819 86703871 . + . transcript_id "STRG.2299.1"; gene_id "STRG.2299"; exon_number "1"; +1 StringTie exon 86744681 86744828 . + . transcript_id "STRG.2299.1"; gene_id "STRG.2299"; exon_number "2"; +1 StringTie exon 86745341 86745498 . + . transcript_id "STRG.2299.1"; gene_id "STRG.2299"; exon_number "3"; +1 StringTie exon 86754227 86754280 . + . transcript_id "STRG.2299.1"; gene_id "STRG.2299"; exon_number "4"; +1 StringTie exon 86760288 86760389 . + . transcript_id "STRG.2299.1"; gene_id "STRG.2299"; exon_number "5"; +1 StringTie exon 86791416 86791457 . + . transcript_id "STRG.2299.1"; gene_id "STRG.2299"; exon_number "6"; +1 StringTie exon 86821222 86821450 . + . transcript_id "STRG.2299.1"; gene_id "STRG.2299"; exon_number "7"; +1 StringTie exon 86854360 86854460 . + . transcript_id "STRG.2299.1"; gene_id "STRG.2299"; exon_number "8"; +1 StringTie exon 86857127 86857374 . + . transcript_id "STRG.2299.1"; gene_id "STRG.2299"; exon_number "9"; +1 StringTie exon 86878403 86878576 . + . transcript_id "STRG.2299.1"; gene_id "STRG.2299"; exon_number "10"; +1 StringTie exon 86930754 86930833 . + . transcript_id "STRG.2299.1"; gene_id "STRG.2299"; exon_number "11"; +1 StringTie exon 86959743 86959855 . + . transcript_id "STRG.2299.1"; gene_id "STRG.2299"; exon_number "12"; +1 StringTie exon 86973400 86973507 . + . transcript_id "STRG.2299.1"; gene_id "STRG.2299"; exon_number "13"; +1 StringTie exon 86990092 86990325 . + . transcript_id "STRG.2299.1"; gene_id "STRG.2299"; exon_number "14"; +1 StringTie exon 87021038 87021117 . + . transcript_id "STRG.2299.1"; gene_id "STRG.2299"; exon_number "15"; +1 StringTie exon 87044017 87044200 . + . transcript_id "STRG.2299.1"; gene_id "STRG.2299"; exon_number "16"; +1 StringTie exon 87044830 87044916 . + . transcript_id "STRG.2299.1"; gene_id "STRG.2299"; exon_number "17"; +1 StringTie exon 87047037 87047184 . + . transcript_id "STRG.2299.1"; gene_id "STRG.2299"; exon_number "18"; +1 StringTie exon 87047448 87047578 . + . transcript_id "STRG.2299.1"; gene_id "STRG.2299"; exon_number "19"; +1 StringTie exon 87047688 87047792 . + . transcript_id "STRG.2299.1"; gene_id "STRG.2299"; exon_number "20"; +1 StringTie exon 87048833 87048934 . + . transcript_id "STRG.2299.1"; gene_id "STRG.2299"; exon_number "21"; +1 StringTie exon 87049623 87050095 . + . transcript_id "STRG.2299.1"; gene_id "STRG.2299"; exon_number "22"; +1 StringTie transcript 86703828 86882439 . + . transcript_id "STRG.2299.5"; gene_id "STRG.2299"; gene_name "Dis3l2"; xloc "XLOC_000165"; ref_gene_id "ENSMUSG00000053333"; cmp_ref "ENSMUST00000189044"; class_code "="; tss_id "TSS424"; +1 StringTie exon 86703828 86703871 . + . transcript_id "STRG.2299.5"; gene_id "STRG.2299"; exon_number "1"; +1 StringTie exon 86744681 86744828 . + . transcript_id "STRG.2299.5"; gene_id "STRG.2299"; exon_number "2"; +1 StringTie exon 86745341 86745498 . + . transcript_id "STRG.2299.5"; gene_id "STRG.2299"; exon_number "3"; +1 StringTie exon 86754227 86754280 . + . transcript_id "STRG.2299.5"; gene_id "STRG.2299"; exon_number "4"; +1 StringTie exon 86760288 86760389 . + . transcript_id "STRG.2299.5"; gene_id "STRG.2299"; exon_number "5"; +1 StringTie exon 86791416 86791457 . + . transcript_id "STRG.2299.5"; gene_id "STRG.2299"; exon_number "6"; +1 StringTie exon 86812512 86812589 . + . transcript_id "STRG.2299.5"; gene_id "STRG.2299"; exon_number "7"; +1 StringTie exon 86821222 86821450 . + . transcript_id "STRG.2299.5"; gene_id "STRG.2299"; exon_number "8"; +1 StringTie exon 86854360 86854460 . + . transcript_id "STRG.2299.5"; gene_id "STRG.2299"; exon_number "9"; +1 StringTie exon 86857127 86857374 . + . transcript_id "STRG.2299.5"; gene_id "STRG.2299"; exon_number "10"; +1 StringTie exon 86878403 86882439 . + . transcript_id "STRG.2299.5"; gene_id "STRG.2299"; exon_number "11"; +1 StringTie transcript 86703828 87049195 . + . transcript_id "STRG.2299.3"; gene_id "STRG.2299"; gene_name "Dis3l2"; xloc "XLOC_000165"; ref_gene_id "ENSMUSG00000053333"; cmp_ref "ENSMUST00000190618"; class_code "="; tss_id "TSS424"; p_id "P252"; +1 StringTie exon 86703828 86703871 . + . transcript_id "STRG.2299.3"; gene_id "STRG.2299"; exon_number "1"; +1 StringTie exon 86744681 86744828 . + . transcript_id "STRG.2299.3"; gene_id "STRG.2299"; exon_number "2"; +1 StringTie exon 86745341 86745498 . + . transcript_id "STRG.2299.3"; gene_id "STRG.2299"; exon_number "3"; +1 StringTie exon 86754227 86754280 . + . transcript_id "STRG.2299.3"; gene_id "STRG.2299"; exon_number "4"; +1 StringTie exon 86760288 86760389 . + . transcript_id "STRG.2299.3"; gene_id "STRG.2299"; exon_number "5"; +1 StringTie exon 86812512 86812589 . + . transcript_id "STRG.2299.3"; gene_id "STRG.2299"; exon_number "6"; +1 StringTie exon 86821222 86821450 . + . transcript_id "STRG.2299.3"; gene_id "STRG.2299"; exon_number "7"; +1 StringTie exon 86854360 86854460 . + . transcript_id "STRG.2299.3"; gene_id "STRG.2299"; exon_number "8"; +1 StringTie exon 86857127 86857374 . + . transcript_id "STRG.2299.3"; gene_id "STRG.2299"; exon_number "9"; +1 StringTie exon 86878403 86878576 . + . transcript_id "STRG.2299.3"; gene_id "STRG.2299"; exon_number "10"; +1 StringTie exon 86930754 86930833 . + . transcript_id "STRG.2299.3"; gene_id "STRG.2299"; exon_number "11"; +1 StringTie exon 86959743 86959855 . + . transcript_id "STRG.2299.3"; gene_id "STRG.2299"; exon_number "12"; +1 StringTie exon 86973400 86973507 . + . transcript_id "STRG.2299.3"; gene_id "STRG.2299"; exon_number "13"; +1 StringTie exon 86990092 86990325 . + . transcript_id "STRG.2299.3"; gene_id "STRG.2299"; exon_number "14"; +1 StringTie exon 87021038 87021117 . + . transcript_id "STRG.2299.3"; gene_id "STRG.2299"; exon_number "15"; +1 StringTie exon 87044017 87044200 . + . transcript_id "STRG.2299.3"; gene_id "STRG.2299"; exon_number "16"; +1 StringTie exon 87044830 87044916 . + . transcript_id "STRG.2299.3"; gene_id "STRG.2299"; exon_number "17"; +1 StringTie exon 87047037 87047184 . + . transcript_id "STRG.2299.3"; gene_id "STRG.2299"; exon_number "18"; +1 StringTie exon 87047448 87047578 . + . transcript_id "STRG.2299.3"; gene_id "STRG.2299"; exon_number "19"; +1 StringTie exon 87047688 87047792 . + . transcript_id "STRG.2299.3"; gene_id "STRG.2299"; exon_number "20"; +1 StringTie exon 87048833 87049195 . + . transcript_id "STRG.2299.3"; gene_id "STRG.2299"; exon_number "21"; +1 StringTie transcript 86703843 87050092 . + . transcript_id "STRG.2299.4"; gene_id "STRG.2299"; gene_name "Dis3l2"; xloc "XLOC_000165"; cmp_ref "ENSMUST00000168237"; class_code "j"; tss_id "TSS424"; +1 StringTie exon 86703843 86703871 . + . transcript_id "STRG.2299.4"; gene_id "STRG.2299"; exon_number "1"; +1 StringTie exon 86744681 86744828 . + . transcript_id "STRG.2299.4"; gene_id "STRG.2299"; exon_number "2"; +1 StringTie exon 86745341 86745498 . + . transcript_id "STRG.2299.4"; gene_id "STRG.2299"; exon_number "3"; +1 StringTie exon 86754227 86754280 . + . transcript_id "STRG.2299.4"; gene_id "STRG.2299"; exon_number "4"; +1 StringTie exon 86760288 86760389 . + . transcript_id "STRG.2299.4"; gene_id "STRG.2299"; exon_number "5"; +1 StringTie exon 86812512 86812589 . + . transcript_id "STRG.2299.4"; gene_id "STRG.2299"; exon_number "6"; +1 StringTie exon 86821222 86821450 . + . transcript_id "STRG.2299.4"; gene_id "STRG.2299"; exon_number "7"; +1 StringTie exon 86854360 86854460 . + . transcript_id "STRG.2299.4"; gene_id "STRG.2299"; exon_number "8"; +1 StringTie exon 86857127 86857374 . + . transcript_id "STRG.2299.4"; gene_id "STRG.2299"; exon_number "9"; +1 StringTie exon 86878403 86878576 . + . transcript_id "STRG.2299.4"; gene_id "STRG.2299"; exon_number "10"; +1 StringTie exon 86930754 86930833 . + . transcript_id "STRG.2299.4"; gene_id "STRG.2299"; exon_number "11"; +1 StringTie exon 86959743 86959855 . + . transcript_id "STRG.2299.4"; gene_id "STRG.2299"; exon_number "12"; +1 StringTie exon 86990092 86990325 . + . transcript_id "STRG.2299.4"; gene_id "STRG.2299"; exon_number "13"; +1 StringTie exon 87021038 87021117 . + . transcript_id "STRG.2299.4"; gene_id "STRG.2299"; exon_number "14"; +1 StringTie exon 87044017 87044200 . + . transcript_id "STRG.2299.4"; gene_id "STRG.2299"; exon_number "15"; +1 StringTie exon 87044830 87044916 . + . transcript_id "STRG.2299.4"; gene_id "STRG.2299"; exon_number "16"; +1 StringTie exon 87047037 87047184 . + . transcript_id "STRG.2299.4"; gene_id "STRG.2299"; exon_number "17"; +1 StringTie exon 87047448 87047578 . + . transcript_id "STRG.2299.4"; gene_id "STRG.2299"; exon_number "18"; +1 StringTie exon 87047688 87047792 . + . transcript_id "STRG.2299.4"; gene_id "STRG.2299"; exon_number "19"; +1 StringTie exon 87048833 87048934 . + . transcript_id "STRG.2299.4"; gene_id "STRG.2299"; exon_number "20"; +1 StringTie exon 87049623 87050092 . + . transcript_id "STRG.2299.4"; gene_id "STRG.2299"; exon_number "21"; +1 StringTie transcript 86703843 87050092 . + . transcript_id "STRG.2299.2"; gene_id "STRG.2299"; gene_name "Dis3l2"; xloc "XLOC_000165"; ref_gene_id "ENSMUSG00000053333"; cmp_ref "ENSMUST00000065694"; class_code "="; tss_id "TSS424"; p_id "P254"; +1 StringTie exon 86703843 86703871 . + . transcript_id "STRG.2299.2"; gene_id "STRG.2299"; exon_number "1"; +1 StringTie exon 86744681 86744828 . + . transcript_id "STRG.2299.2"; gene_id "STRG.2299"; exon_number "2"; +1 StringTie exon 86745341 86745498 . + . transcript_id "STRG.2299.2"; gene_id "STRG.2299"; exon_number "3"; +1 StringTie exon 86754227 86754280 . + . transcript_id "STRG.2299.2"; gene_id "STRG.2299"; exon_number "4"; +1 StringTie exon 86760288 86760389 . + . transcript_id "STRG.2299.2"; gene_id "STRG.2299"; exon_number "5"; +1 StringTie exon 86821222 86821450 . + . transcript_id "STRG.2299.2"; gene_id "STRG.2299"; exon_number "6"; +1 StringTie exon 86854360 86854460 . + . transcript_id "STRG.2299.2"; gene_id "STRG.2299"; exon_number "7"; +1 StringTie exon 86857127 86857374 . + . transcript_id "STRG.2299.2"; gene_id "STRG.2299"; exon_number "8"; +1 StringTie exon 86878403 86878576 . + . transcript_id "STRG.2299.2"; gene_id "STRG.2299"; exon_number "9"; +1 StringTie exon 86930754 86930833 . + . transcript_id "STRG.2299.2"; gene_id "STRG.2299"; exon_number "10"; +1 StringTie exon 86959743 86959855 . + . transcript_id "STRG.2299.2"; gene_id "STRG.2299"; exon_number "11"; +1 StringTie exon 86973400 86973507 . + . transcript_id "STRG.2299.2"; gene_id "STRG.2299"; exon_number "12"; +1 StringTie exon 86990092 86990325 . + . transcript_id "STRG.2299.2"; gene_id "STRG.2299"; exon_number "13"; +1 StringTie exon 87021038 87021117 . + . transcript_id "STRG.2299.2"; gene_id "STRG.2299"; exon_number "14"; +1 StringTie exon 87044017 87044200 . + . transcript_id "STRG.2299.2"; gene_id "STRG.2299"; exon_number "15"; +1 StringTie exon 87044830 87044916 . + . transcript_id "STRG.2299.2"; gene_id "STRG.2299"; exon_number "16"; +1 StringTie exon 87047037 87047184 . + . transcript_id "STRG.2299.2"; gene_id "STRG.2299"; exon_number "17"; +1 StringTie exon 87047448 87047578 . + . transcript_id "STRG.2299.2"; gene_id "STRG.2299"; exon_number "18"; +1 StringTie exon 87047688 87047792 . + . transcript_id "STRG.2299.2"; gene_id "STRG.2299"; exon_number "19"; +1 StringTie exon 87048833 87048934 . + . transcript_id "STRG.2299.2"; gene_id "STRG.2299"; exon_number "20"; +1 StringTie exon 87049623 87050092 . + . transcript_id "STRG.2299.2"; gene_id "STRG.2299"; exon_number "21"; +1 StringTie transcript 86754159 86767638 . + . transcript_id "STRG.2299.6"; gene_id "STRG.2299"; gene_name "Dis3l2"; xloc "XLOC_000165"; cmp_ref "ENSMUST00000168237"; class_code "j"; tss_id "TSS425"; +1 StringTie exon 86754159 86754280 . + . transcript_id "STRG.2299.6"; gene_id "STRG.2299"; exon_number "1"; +1 StringTie exon 86760288 86760389 . + . transcript_id "STRG.2299.6"; gene_id "STRG.2299"; exon_number "2"; +1 StringTie exon 86767130 86767638 . + . transcript_id "STRG.2299.6"; gene_id "STRG.2299"; exon_number "3"; +1 StringTie transcript 9941959 9944118 . - . transcript_id "STRG.229.1"; gene_id "STRG.229"; gene_name "Snhg6"; xloc "XLOC_000389"; ref_gene_id "ENSMUSG00000098234"; cmp_ref "ENSMUST00000182580"; class_code "="; tss_id "TSS990"; +1 StringTie exon 9941959 9942155 . - . transcript_id "STRG.229.1"; gene_id "STRG.229"; exon_number "1"; +1 StringTie exon 9942323 9942391 . - . transcript_id "STRG.229.1"; gene_id "STRG.229"; exon_number "2"; +1 StringTie exon 9942610 9942717 . - . transcript_id "STRG.229.1"; gene_id "STRG.229"; exon_number "3"; +1 StringTie exon 9944020 9944118 . - . transcript_id "STRG.229.1"; gene_id "STRG.229"; exon_number "4"; +1 StringTie transcript 9942023 9943223 . - . transcript_id "STRG.229.5"; gene_id "STRG.229"; gene_name "Snhg6"; xloc "XLOC_000389"; ref_gene_id "ENSMUSG00000098234"; cmp_ref "ENSMUST00000182819"; class_code "="; tss_id "TSS991"; +1 StringTie exon 9942023 9942155 . - . transcript_id "STRG.229.5"; gene_id "STRG.229"; exon_number "1"; +1 StringTie exon 9942323 9942391 . - . transcript_id "STRG.229.5"; gene_id "STRG.229"; exon_number "2"; +1 StringTie exon 9942610 9943223 . - . transcript_id "STRG.229.5"; gene_id "STRG.229"; exon_number "3"; +1 StringTie transcript 9942025 9942897 . - . transcript_id "STRG.229.7"; gene_id "STRG.229"; gene_name "Snhg6"; xloc "XLOC_000389"; ref_gene_id "ENSMUSG00000098234"; cmp_ref "ENSMUST00000182043"; class_code "="; tss_id "TSS992"; +1 StringTie exon 9942025 9942391 . - . transcript_id "STRG.229.7"; gene_id "STRG.229"; exon_number "1"; +1 StringTie exon 9942610 9942897 . - . transcript_id "STRG.229.7"; gene_id "STRG.229"; exon_number "2"; +1 StringTie transcript 9942025 9944103 . - . transcript_id "STRG.229.6"; gene_id "STRG.229"; gene_name "Snhg6"; xloc "XLOC_000389"; cmp_ref "ENSMUST00000182580"; class_code "j"; tss_id "TSS990"; +1 StringTie exon 9942025 9942155 . - . transcript_id "STRG.229.6"; gene_id "STRG.229"; exon_number "1"; +1 StringTie exon 9942323 9942717 . - . transcript_id "STRG.229.6"; gene_id "STRG.229"; exon_number "2"; +1 StringTie exon 9944020 9944103 . - . transcript_id "STRG.229.6"; gene_id "STRG.229"; exon_number "3"; +1 StringTie transcript 9942025 9944103 . - . transcript_id "STRG.229.4"; gene_id "STRG.229"; gene_name "Snhg6"; xloc "XLOC_000389"; ref_gene_id "ENSMUSG00000098234"; cmp_ref "ENSMUST00000182498"; class_code "="; tss_id "TSS990"; +1 StringTie exon 9942025 9942391 . - . transcript_id "STRG.229.4"; gene_id "STRG.229"; exon_number "1"; +1 StringTie exon 9942610 9942717 . - . transcript_id "STRG.229.4"; gene_id "STRG.229"; exon_number "2"; +1 StringTie exon 9944020 9944103 . - . transcript_id "STRG.229.4"; gene_id "STRG.229"; exon_number "3"; +1 StringTie transcript 9942025 9944103 . - . transcript_id "STRG.229.3"; gene_id "STRG.229"; gene_name "Snhg6"; xloc "XLOC_000389"; cmp_ref "ENSMUST00000182580"; class_code "j"; tss_id "TSS990"; +1 StringTie exon 9942025 9942155 . - . transcript_id "STRG.229.3"; gene_id "STRG.229"; exon_number "1"; +1 StringTie exon 9942323 9942384 . - . transcript_id "STRG.229.3"; gene_id "STRG.229"; exon_number "2"; +1 StringTie exon 9942610 9942717 . - . transcript_id "STRG.229.3"; gene_id "STRG.229"; exon_number "3"; +1 StringTie exon 9944020 9944103 . - . transcript_id "STRG.229.3"; gene_id "STRG.229"; exon_number "4"; +1 StringTie transcript 9942025 9944117 . - . transcript_id "STRG.229.2"; gene_id "STRG.229"; gene_name "Snhg6"; xloc "XLOC_000389"; ref_gene_id "ENSMUSG00000098234"; cmp_ref "ENSMUST00000182742"; class_code "="; tss_id "TSS990"; +1 StringTie exon 9942025 9942149 . - . transcript_id "STRG.229.2"; gene_id "STRG.229"; exon_number "1"; +1 StringTie exon 9942323 9942391 . - . transcript_id "STRG.229.2"; gene_id "STRG.229"; exon_number "2"; +1 StringTie exon 9942610 9942717 . - . transcript_id "STRG.229.2"; gene_id "STRG.229"; exon_number "3"; +1 StringTie exon 9944020 9944117 . - . transcript_id "STRG.229.2"; gene_id "STRG.229"; exon_number "4"; +1 StringTie transcript 86908793 86909683 . - . transcript_id "STRG.2297.1"; gene_id "STRG.2297"; gene_name "Dis3l2"; xloc "XLOC_000527"; cmp_ref "ENSMUST00000168237"; class_code "i"; tss_id "TSS1418"; +1 StringTie exon 86908793 86909111 . - . transcript_id "STRG.2297.1"; gene_id "STRG.2297"; exon_number "1"; +1 StringTie exon 86909399 86909683 . - . transcript_id "STRG.2297.1"; gene_id "STRG.2297"; exon_number "2"; +1 StringTie transcript 193145391 193173087 . + . transcript_id "STRG.5202.1"; gene_id "STRG.5202"; gene_name "Irf6"; xloc "XLOC_000382"; cmp_ref "ENSMUST00000076521"; class_code "j"; tss_id "TSS969"; +1 StringTie exon 193145391 193145432 . + . transcript_id "STRG.5202.1"; gene_id "STRG.5202"; exon_number "1"; +1 StringTie exon 193157216 193157392 . + . transcript_id "STRG.5202.1"; gene_id "STRG.5202"; exon_number "2"; +1 StringTie exon 193161613 193161817 . + . transcript_id "STRG.5202.1"; gene_id "STRG.5202"; exon_number "3"; +1 StringTie exon 193162602 193162730 . + . transcript_id "STRG.5202.1"; gene_id "STRG.5202"; exon_number "4"; +1 StringTie exon 193165766 193165924 . + . transcript_id "STRG.5202.1"; gene_id "STRG.5202"; exon_number "5"; +1 StringTie exon 193167439 193167831 . + . transcript_id "STRG.5202.1"; gene_id "STRG.5202"; exon_number "6"; +1 StringTie exon 193168517 193168635 . + . transcript_id "STRG.5202.1"; gene_id "STRG.5202"; exon_number "7"; +1 StringTie exon 193169282 193173087 . + . transcript_id "STRG.5202.1"; gene_id "STRG.5202"; exon_number "8"; +1 StringTie transcript 193156669 193164181 . + . transcript_id "STRG.5202.2"; gene_id "STRG.5202"; gene_name "Irf6"; xloc "XLOC_000382"; ref_gene_id "ENSMUSG00000026638"; cmp_ref "ENSMUST00000140066"; class_code "="; tss_id "TSS970"; +1 StringTie exon 193156669 193157392 . + . transcript_id "STRG.5202.2"; gene_id "STRG.5202"; exon_number "1"; +1 StringTie exon 193161613 193161817 . + . transcript_id "STRG.5202.2"; gene_id "STRG.5202"; exon_number "2"; +1 StringTie exon 193162602 193164181 . + . transcript_id "STRG.5202.2"; gene_id "STRG.5202"; exon_number "3"; +1 StringTie transcript 193167975 193173087 . + . transcript_id "STRG.5202.3"; gene_id "STRG.5202"; gene_name "Irf6"; xloc "XLOC_000382"; cmp_ref "ENSMUST00000076521"; class_code "j"; tss_id "TSS971"; +1 StringTie exon 193167975 193168131 . + . transcript_id "STRG.5202.3"; gene_id "STRG.5202"; exon_number "1"; +1 StringTie exon 193168517 193168635 . + . transcript_id "STRG.5202.3"; gene_id "STRG.5202"; exon_number "2"; +1 StringTie exon 193169282 193173087 . + . transcript_id "STRG.5202.3"; gene_id "STRG.5202"; exon_number "3"; +1 StringTie transcript 193168503 193169489 . + . transcript_id "STRG.5202.4"; gene_id "STRG.5202"; gene_name "Irf6"; xloc "XLOC_000382"; ref_gene_id "ENSMUSG00000026638"; cmp_ref "ENSMUST00000193772"; class_code "="; tss_id "TSS972"; +1 StringTie exon 193168503 193168635 . + . transcript_id "STRG.5202.4"; gene_id "STRG.5202"; exon_number "1"; +1 StringTie exon 193169282 193169489 . + . transcript_id "STRG.5202.4"; gene_id "STRG.5202"; exon_number "2"; +2 StringTie transcript 119749139 119749844 . + . transcript_id "STRG.8811.1"; gene_id "STRG.8811"; gene_name "Itpka"; xloc "XLOC_006614"; cmp_ref "ENSMUST00000028758"; class_code "j"; tss_id "TSS15414"; +2 StringTie exon 119749139 119749286 . + . transcript_id "STRG.8811.1"; gene_id "STRG.8811"; exon_number "1"; +2 StringTie exon 119749362 119749578 . + . transcript_id "STRG.8811.1"; gene_id "STRG.8811"; exon_number "2"; +2 StringTie exon 119749673 119749844 . + . transcript_id "STRG.8811.1"; gene_id "STRG.8811"; exon_number "3"; +2 StringTie transcript 119972464 120018974 . + . transcript_id "STRG.8821.1"; gene_id "STRG.8821"; gene_name "Mapkbp1"; xloc "XLOC_006617"; cmp_ref "ENSMUST00000066058"; class_code "j"; tss_id "TSS15426"; +2 StringTie exon 119972464 119972480 . + . transcript_id "STRG.8821.1"; gene_id "STRG.8821"; exon_number "1"; +2 StringTie exon 119972946 119973168 . + . transcript_id "STRG.8821.1"; gene_id "STRG.8821"; exon_number "2"; +2 StringTie exon 119998482 119998573 . + . transcript_id "STRG.8821.1"; gene_id "STRG.8821"; exon_number "3"; +2 StringTie exon 120010743 120010805 . + . transcript_id "STRG.8821.1"; gene_id "STRG.8821"; exon_number "4"; +2 StringTie exon 120011002 120011059 . + . transcript_id "STRG.8821.1"; gene_id "STRG.8821"; exon_number "5"; +2 StringTie exon 120011933 120012103 . + . transcript_id "STRG.8821.1"; gene_id "STRG.8821"; exon_number "6"; +2 StringTie exon 120012593 120012730 . + . transcript_id "STRG.8821.1"; gene_id "STRG.8821"; exon_number "7"; +2 StringTie exon 120012912 120013094 . + . transcript_id "STRG.8821.1"; gene_id "STRG.8821"; exon_number "8"; +2 StringTie exon 120013619 120013779 . + . transcript_id "STRG.8821.1"; gene_id "STRG.8821"; exon_number "9"; +2 StringTie exon 120014623 120014812 . + . transcript_id "STRG.8821.1"; gene_id "STRG.8821"; exon_number "10"; +2 StringTie exon 120015343 120015489 . + . transcript_id "STRG.8821.1"; gene_id "STRG.8821"; exon_number "11"; +2 StringTie exon 120015693 120015868 . + . transcript_id "STRG.8821.1"; gene_id "STRG.8821"; exon_number "12"; +2 StringTie exon 120016780 120016871 . + . transcript_id "STRG.8821.1"; gene_id "STRG.8821"; exon_number "13"; +2 StringTie exon 120017140 120017265 . + . transcript_id "STRG.8821.1"; gene_id "STRG.8821"; exon_number "14"; +2 StringTie exon 120017581 120017651 . + . transcript_id "STRG.8821.1"; gene_id "STRG.8821"; exon_number "15"; +2 StringTie exon 120017756 120017877 . + . transcript_id "STRG.8821.1"; gene_id "STRG.8821"; exon_number "16"; +2 StringTie exon 120018299 120018374 . + . transcript_id "STRG.8821.1"; gene_id "STRG.8821"; exon_number "17"; +2 StringTie exon 120018488 120018599 . + . transcript_id "STRG.8821.1"; gene_id "STRG.8821"; exon_number "18"; +2 StringTie exon 120018922 120018974 . + . transcript_id "STRG.8821.1"; gene_id "STRG.8821"; exon_number "19"; +2 StringTie transcript 120011687 120013094 . + . transcript_id "STRG.8821.3"; gene_id "STRG.8821"; gene_name "Mapkbp1"; xloc "XLOC_006617"; ref_gene_id "ENSMUSG00000033902"; cmp_ref "ENSMUST00000137760"; class_code "="; tss_id "TSS15427"; +2 StringTie exon 120011687 120012103 . + . transcript_id "STRG.8821.3"; gene_id "STRG.8821"; exon_number "1"; +2 StringTie exon 120012593 120012730 . + . transcript_id "STRG.8821.3"; gene_id "STRG.8821"; exon_number "2"; +2 StringTie exon 120012912 120013094 . + . transcript_id "STRG.8821.3"; gene_id "STRG.8821"; exon_number "3"; +2 StringTie transcript 120013043 120015605 . + . transcript_id "STRG.8821.2"; gene_id "STRG.8821"; gene_name "Mapkbp1"; xloc "XLOC_006617"; ref_gene_id "ENSMUSG00000033902"; cmp_ref "ENSMUST00000128077"; class_code "="; tss_id "TSS15428"; +2 StringTie exon 120013043 120013094 . + . transcript_id "STRG.8821.2"; gene_id "STRG.8821"; exon_number "1"; +2 StringTie exon 120013619 120013779 . + . transcript_id "STRG.8821.2"; gene_id "STRG.8821"; exon_number "2"; +2 StringTie exon 120014623 120014812 . + . transcript_id "STRG.8821.2"; gene_id "STRG.8821"; exon_number "3"; +2 StringTie exon 120015343 120015605 . + . transcript_id "STRG.8821.2"; gene_id "STRG.8821"; exon_number "4"; +2 StringTie transcript 121008403 121016904 . + . transcript_id "STRG.8871.1"; gene_id "STRG.8871"; gene_name "Ccndbp1"; xloc "XLOC_006626"; ref_gene_id "ENSMUSG00000023572"; cmp_ref "ENSMUST00000060455"; class_code "="; tss_id "TSS15463"; p_id "P8181"; +2 StringTie exon 121008403 121008609 . + . transcript_id "STRG.8871.1"; gene_id "STRG.8871"; exon_number "1"; +2 StringTie exon 121008718 121008777 . + . transcript_id "STRG.8871.1"; gene_id "STRG.8871"; exon_number "2"; +2 StringTie exon 121009043 121009122 . + . transcript_id "STRG.8871.1"; gene_id "STRG.8871"; exon_number "3"; +2 StringTie exon 121009827 121009908 . + . transcript_id "STRG.8871.1"; gene_id "STRG.8871"; exon_number "4"; +2 StringTie exon 121011434 121011530 . + . transcript_id "STRG.8871.1"; gene_id "STRG.8871"; exon_number "5"; +2 StringTie exon 121011683 121011756 . + . transcript_id "STRG.8871.1"; gene_id "STRG.8871"; exon_number "6"; +2 StringTie exon 121012353 121012429 . + . transcript_id "STRG.8871.1"; gene_id "STRG.8871"; exon_number "7"; +2 StringTie exon 121012699 121012976 . + . transcript_id "STRG.8871.1"; gene_id "STRG.8871"; exon_number "8"; +2 StringTie exon 121013958 121014018 . + . transcript_id "STRG.8871.1"; gene_id "STRG.8871"; exon_number "9"; +2 StringTie exon 121016131 121016177 . + . transcript_id "STRG.8871.1"; gene_id "STRG.8871"; exon_number "10"; +2 StringTie exon 121016399 121016904 . + . transcript_id "STRG.8871.1"; gene_id "STRG.8871"; exon_number "11"; +2 StringTie transcript 121008432 121015120 . + . transcript_id "STRG.8871.3"; gene_id "STRG.8871"; gene_name "Ccndbp1"; xloc "XLOC_006626"; ref_gene_id "ENSMUSG00000023572"; cmp_ref "ENSMUST00000099488"; class_code "="; tss_id "TSS15463"; p_id "P8182"; +2 StringTie exon 121008432 121008609 . + . transcript_id "STRG.8871.3"; gene_id "STRG.8871"; exon_number "1"; +2 StringTie exon 121008718 121008777 . + . transcript_id "STRG.8871.3"; gene_id "STRG.8871"; exon_number "2"; +2 StringTie exon 121009043 121009122 . + . transcript_id "STRG.8871.3"; gene_id "STRG.8871"; exon_number "3"; +2 StringTie exon 121009827 121009908 . + . transcript_id "STRG.8871.3"; gene_id "STRG.8871"; exon_number "4"; +2 StringTie exon 121011434 121011530 . + . transcript_id "STRG.8871.3"; gene_id "STRG.8871"; exon_number "5"; +2 StringTie exon 121011683 121011756 . + . transcript_id "STRG.8871.3"; gene_id "STRG.8871"; exon_number "6"; +2 StringTie exon 121012353 121012429 . + . transcript_id "STRG.8871.3"; gene_id "STRG.8871"; exon_number "7"; +2 StringTie exon 121012699 121012976 . + . transcript_id "STRG.8871.3"; gene_id "STRG.8871"; exon_number "8"; +2 StringTie exon 121013958 121014018 . + . transcript_id "STRG.8871.3"; gene_id "STRG.8871"; exon_number "9"; +2 StringTie exon 121014513 121015120 . + . transcript_id "STRG.8871.3"; gene_id "STRG.8871"; exon_number "10"; +2 StringTie transcript 121008448 121016904 . + . transcript_id "STRG.8871.2"; gene_id "STRG.8871"; gene_name "Ccndbp1"; xloc "XLOC_006626"; ref_gene_id "ENSMUSG00000023572"; cmp_ref "ENSMUST00000099489"; class_code "="; tss_id "TSS15463"; p_id "P8183"; +2 StringTie exon 121008448 121008777 . + . transcript_id "STRG.8871.2"; gene_id "STRG.8871"; exon_number "1"; +2 StringTie exon 121009043 121009122 . + . transcript_id "STRG.8871.2"; gene_id "STRG.8871"; exon_number "2"; +2 StringTie exon 121009827 121009908 . + . transcript_id "STRG.8871.2"; gene_id "STRG.8871"; exon_number "3"; +2 StringTie exon 121011434 121011530 . + . transcript_id "STRG.8871.2"; gene_id "STRG.8871"; exon_number "4"; +2 StringTie exon 121011683 121011756 . + . transcript_id "STRG.8871.2"; gene_id "STRG.8871"; exon_number "5"; +2 StringTie exon 121012353 121012429 . + . transcript_id "STRG.8871.2"; gene_id "STRG.8871"; exon_number "6"; +2 StringTie exon 121012699 121012976 . + . transcript_id "STRG.8871.2"; gene_id "STRG.8871"; exon_number "7"; +2 StringTie exon 121013958 121014018 . + . transcript_id "STRG.8871.2"; gene_id "STRG.8871"; exon_number "8"; +2 StringTie exon 121016131 121016177 . + . transcript_id "STRG.8871.2"; gene_id "STRG.8871"; exon_number "9"; +2 StringTie exon 121016399 121016904 . + . transcript_id "STRG.8871.2"; gene_id "STRG.8871"; exon_number "10"; +2 StringTie transcript 121008467 121011756 . + . transcript_id "STRG.8871.5"; gene_id "STRG.8871"; gene_name "Ccndbp1"; xloc "XLOC_006626"; cmp_ref "ENSMUST00000060455"; class_code "j"; tss_id "TSS15463"; +2 StringTie exon 121008467 121008777 . + . transcript_id "STRG.8871.5"; gene_id "STRG.8871"; exon_number "1"; +2 StringTie exon 121009043 121009122 . + . transcript_id "STRG.8871.5"; gene_id "STRG.8871"; exon_number "2"; +2 StringTie exon 121009827 121011530 . + . transcript_id "STRG.8871.5"; gene_id "STRG.8871"; exon_number "3"; +2 StringTie exon 121011683 121011756 . + . transcript_id "STRG.8871.5"; gene_id "STRG.8871"; exon_number "4"; +2 StringTie transcript 121008467 121012948 . + . transcript_id "STRG.8871.4"; gene_id "STRG.8871"; gene_name "Ccndbp1"; xloc "XLOC_006626"; ref_gene_id "ENSMUSG00000023572"; cmp_ref "ENSMUST00000140468"; class_code "="; tss_id "TSS15463"; +2 StringTie exon 121008467 121008609 . + . transcript_id "STRG.8871.4"; gene_id "STRG.8871"; exon_number "1"; +2 StringTie exon 121008718 121008777 . + . transcript_id "STRG.8871.4"; gene_id "STRG.8871"; exon_number "2"; +2 StringTie exon 121009043 121009122 . + . transcript_id "STRG.8871.4"; gene_id "STRG.8871"; exon_number "3"; +2 StringTie exon 121009827 121009908 . + . transcript_id "STRG.8871.4"; gene_id "STRG.8871"; exon_number "4"; +2 StringTie exon 121011434 121011558 . + . transcript_id "STRG.8871.4"; gene_id "STRG.8871"; exon_number "5"; +2 StringTie exon 121011683 121011756 . + . transcript_id "STRG.8871.4"; gene_id "STRG.8871"; exon_number "6"; +2 StringTie exon 121012353 121012429 . + . transcript_id "STRG.8871.4"; gene_id "STRG.8871"; exon_number "7"; +2 StringTie exon 121012699 121012948 . + . transcript_id "STRG.8871.4"; gene_id "STRG.8871"; exon_number "8"; +2 StringTie transcript 121008704 121010577 . + . transcript_id "STRG.8871.6"; gene_id "STRG.8871"; gene_name "Ccndbp1"; xloc "XLOC_006626"; ref_gene_id "ENSMUSG00000023572"; contained_in "STRG.8871.5"; cmp_ref "ENSMUST00000151532"; class_code "="; tss_id "TSS15464"; +2 StringTie exon 121008704 121008777 . + . transcript_id "STRG.8871.6"; gene_id "STRG.8871"; exon_number "1"; +2 StringTie exon 121009043 121009122 . + . transcript_id "STRG.8871.6"; gene_id "STRG.8871"; exon_number "2"; +2 StringTie exon 121009827 121010577 . + . transcript_id "STRG.8871.6"; gene_id "STRG.8871"; exon_number "3"; +2 StringTie transcript 121011055 121011756 . + . transcript_id "STRG.8871.7"; gene_id "STRG.8871"; gene_name "Ccndbp1"; xloc "XLOC_006626"; ref_gene_id "ENSMUSG00000023572"; contained_in "STRG.8871.5"; cmp_ref "ENSMUST00000135036"; class_code "="; tss_id "TSS15465"; +2 StringTie exon 121011055 121011530 . + . transcript_id "STRG.8871.7"; gene_id "STRG.8871"; exon_number "1"; +2 StringTie exon 121011683 121011756 . + . transcript_id "STRG.8871.7"; gene_id "STRG.8871"; exon_number "2"; +2 StringTie transcript 120089175 120154606 . - . transcript_id "STRG.8831.1"; gene_id "STRG.8831"; gene_name "Ehd4"; xloc "XLOC_007147"; ref_gene_id "ENSMUSG00000027293"; cmp_ref "ENSMUST00000028755"; class_code "="; tss_id "TSS16872"; p_id "P8912"; +2 StringTie exon 120089175 120091684 . - . transcript_id "STRG.8831.1"; gene_id "STRG.8831"; exon_number "1"; +2 StringTie exon 120096963 120097127 . - . transcript_id "STRG.8831.1"; gene_id "STRG.8831"; exon_number "2"; +2 StringTie exon 120102020 120102432 . - . transcript_id "STRG.8831.1"; gene_id "STRG.8831"; exon_number "3"; +2 StringTie exon 120127592 120127689 . - . transcript_id "STRG.8831.1"; gene_id "STRG.8831"; exon_number "4"; +2 StringTie exon 120136899 120137075 . - . transcript_id "STRG.8831.1"; gene_id "STRG.8831"; exon_number "5"; +2 StringTie exon 120154240 120154606 . - . transcript_id "STRG.8831.1"; gene_id "STRG.8831"; exon_number "6"; +2 StringTie transcript 121194838 121221232 . - . transcript_id "STRG.8881.3"; gene_id "STRG.8881"; gene_name "Trp53bp1"; xloc "XLOC_007155"; cmp_ref "ENSMUST00000110648"; class_code "j"; tss_id "TSS16904"; +2 StringTie exon 121194838 121198607 . - . transcript_id "STRG.8881.3"; gene_id "STRG.8881"; exon_number "1"; +2 StringTie exon 121198976 121199121 . - . transcript_id "STRG.8881.3"; gene_id "STRG.8881"; exon_number "2"; +2 StringTie exon 121199607 121199806 . - . transcript_id "STRG.8881.3"; gene_id "STRG.8881"; exon_number "3"; +2 StringTie exon 121200303 121200397 . - . transcript_id "STRG.8881.3"; gene_id "STRG.8881"; exon_number "4"; +2 StringTie exon 121202543 121204548 . - . transcript_id "STRG.8881.3"; gene_id "STRG.8881"; exon_number "5"; +2 StringTie exon 121204920 121205111 . - . transcript_id "STRG.8881.3"; gene_id "STRG.8881"; exon_number "6"; +2 StringTie exon 121207699 121208129 . - . transcript_id "STRG.8881.3"; gene_id "STRG.8881"; exon_number "7"; +2 StringTie exon 121208355 121208504 . - . transcript_id "STRG.8881.3"; gene_id "STRG.8881"; exon_number "8"; +2 StringTie exon 121209081 121209352 . - . transcript_id "STRG.8881.3"; gene_id "STRG.8881"; exon_number "9"; +2 StringTie exon 121211270 121211422 . - . transcript_id "STRG.8881.3"; gene_id "STRG.8881"; exon_number "10"; +2 StringTie exon 121215667 121216171 . - . transcript_id "STRG.8881.3"; gene_id "STRG.8881"; exon_number "11"; +2 StringTie exon 121221158 121221232 . - . transcript_id "STRG.8881.3"; gene_id "STRG.8881"; exon_number "12"; +2 StringTie transcript 121199639 121204981 . - . transcript_id "STRG.8881.7"; gene_id "STRG.8881"; gene_name "Trp53bp1"; xloc "XLOC_007155"; ref_gene_id "ENSMUSG00000043909"; cmp_ref "ENSMUST00000147554"; class_code "="; tss_id "TSS16905"; +2 StringTie exon 121199639 121199806 . - . transcript_id "STRG.8881.7"; gene_id "STRG.8881"; exon_number "1"; +2 StringTie exon 121200303 121200397 . - . transcript_id "STRG.8881.7"; gene_id "STRG.8881"; exon_number "2"; +2 StringTie exon 121202543 121202752 . - . transcript_id "STRG.8881.7"; gene_id "STRG.8881"; exon_number "3"; +2 StringTie exon 121204333 121204548 . - . transcript_id "STRG.8881.7"; gene_id "STRG.8881"; exon_number "4"; +2 StringTie exon 121204920 121204981 . - . transcript_id "STRG.8881.7"; gene_id "STRG.8881"; exon_number "5"; +2 StringTie transcript 121199639 121221232 . - . transcript_id "STRG.8881.4"; gene_id "STRG.8881"; gene_name "Trp53bp1"; xloc "XLOC_007155"; cmp_ref "ENSMUST00000110648"; class_code "c"; tss_id "TSS16904"; +2 StringTie exon 121199639 121199806 . - . transcript_id "STRG.8881.4"; gene_id "STRG.8881"; exon_number "1"; +2 StringTie exon 121200303 121200397 . - . transcript_id "STRG.8881.4"; gene_id "STRG.8881"; exon_number "2"; +2 StringTie exon 121202543 121202758 . - . transcript_id "STRG.8881.4"; gene_id "STRG.8881"; exon_number "3"; +2 StringTie exon 121204333 121204548 . - . transcript_id "STRG.8881.4"; gene_id "STRG.8881"; exon_number "4"; +2 StringTie exon 121204920 121205111 . - . transcript_id "STRG.8881.4"; gene_id "STRG.8881"; exon_number "5"; +2 StringTie exon 121207699 121208129 . - . transcript_id "STRG.8881.4"; gene_id "STRG.8881"; exon_number "6"; +2 StringTie exon 121208355 121208504 . - . transcript_id "STRG.8881.4"; gene_id "STRG.8881"; exon_number "7"; +2 StringTie exon 121209081 121209352 . - . transcript_id "STRG.8881.4"; gene_id "STRG.8881"; exon_number "8"; +2 StringTie exon 121211270 121211422 . - . transcript_id "STRG.8881.4"; gene_id "STRG.8881"; exon_number "9"; +2 StringTie exon 121215667 121216171 . - . transcript_id "STRG.8881.4"; gene_id "STRG.8881"; exon_number "10"; +2 StringTie exon 121221158 121221232 . - . transcript_id "STRG.8881.4"; gene_id "STRG.8881"; exon_number "11"; +2 StringTie transcript 121205081 121208574 . - . transcript_id "STRG.8881.11"; gene_id "STRG.8881"; gene_name "Trp53bp1"; xloc "XLOC_007155"; ref_gene_id "ENSMUSG00000043909"; cmp_ref "ENSMUST00000132812"; class_code "="; tss_id "TSS16906"; +2 StringTie exon 121205081 121205111 . - . transcript_id "STRG.8881.11"; gene_id "STRG.8881"; exon_number "1"; +2 StringTie exon 121207699 121208129 . - . transcript_id "STRG.8881.11"; gene_id "STRG.8881"; exon_number "2"; +2 StringTie exon 121208355 121208574 . - . transcript_id "STRG.8881.11"; gene_id "STRG.8881"; exon_number "3"; +2 StringTie transcript 121208845 121221232 . - . transcript_id "STRG.8881.9"; gene_id "STRG.8881"; gene_name "Trp53bp1"; xloc "XLOC_007155"; ref_gene_id "ENSMUSG00000043909"; cmp_ref "ENSMUST00000124411"; class_code "="; tss_id "TSS16904"; +2 StringTie exon 121208845 121209352 . - . transcript_id "STRG.8881.9"; gene_id "STRG.8881"; exon_number "1"; +2 StringTie exon 121211270 121211422 . - . transcript_id "STRG.8881.9"; gene_id "STRG.8881"; exon_number "2"; +2 StringTie exon 121215667 121216171 . - . transcript_id "STRG.8881.9"; gene_id "STRG.8881"; exon_number "3"; +2 StringTie exon 121221158 121221232 . - . transcript_id "STRG.8881.9"; gene_id "STRG.8881"; exon_number "4"; +2 StringTie transcript 121215889 121221379 . - . transcript_id "STRG.8881.14"; gene_id "STRG.8881"; gene_name "Trp53bp1"; xloc "XLOC_007155"; ref_gene_id "ENSMUSG00000043909"; cmp_ref "ENSMUST00000156493"; class_code "="; tss_id "TSS16907"; +2 StringTie exon 121215889 121216171 . - . transcript_id "STRG.8881.14"; gene_id "STRG.8881"; exon_number "1"; +2 StringTie exon 121221158 121221379 . - . transcript_id "STRG.8881.14"; gene_id "STRG.8881"; exon_number "2"; +2 StringTie transcript 121216143 121247714 . - . transcript_id "STRG.8881.5"; gene_id "STRG.8881"; gene_name "Trp53bp1"; xloc "XLOC_007155"; cmp_ref "ENSMUST00000110648"; class_code "j"; tss_id "TSS16908"; +2 StringTie exon 121216143 121216171 . - . transcript_id "STRG.8881.5"; gene_id "STRG.8881"; exon_number "1"; +2 StringTie exon 121221158 121221250 . - . transcript_id "STRG.8881.5"; gene_id "STRG.8881"; exon_number "2"; +2 StringTie exon 121223705 121223762 . - . transcript_id "STRG.8881.5"; gene_id "STRG.8881"; exon_number "3"; +2 StringTie exon 121227645 121228707 . - . transcript_id "STRG.8881.5"; gene_id "STRG.8881"; exon_number "4"; +2 StringTie exon 121235573 121236869 . - . transcript_id "STRG.8881.5"; gene_id "STRG.8881"; exon_number "5"; +2 StringTie exon 121243894 121244096 . - . transcript_id "STRG.8881.5"; gene_id "STRG.8881"; exon_number "6"; +2 StringTie exon 121247501 121247714 . - . transcript_id "STRG.8881.5"; gene_id "STRG.8881"; exon_number "7"; +2 StringTie transcript 121216143 121270286 . - . transcript_id "STRG.8881.2"; gene_id "STRG.8881"; gene_name "Trp53bp1"; xloc "XLOC_007155"; cmp_ref "ENSMUST00000110648"; class_code "c"; tss_id "TSS16909"; +2 StringTie exon 121216143 121216171 . - . transcript_id "STRG.8881.2"; gene_id "STRG.8881"; exon_number "1"; +2 StringTie exon 121221158 121221250 . - . transcript_id "STRG.8881.2"; gene_id "STRG.8881"; exon_number "2"; +2 StringTie exon 121223705 121223762 . - . transcript_id "STRG.8881.2"; gene_id "STRG.8881"; exon_number "3"; +2 StringTie exon 121227645 121227848 . - . transcript_id "STRG.8881.2"; gene_id "STRG.8881"; exon_number "4"; +2 StringTie exon 121228588 121228707 . - . transcript_id "STRG.8881.2"; gene_id "STRG.8881"; exon_number "5"; +2 StringTie exon 121235573 121236869 . - . transcript_id "STRG.8881.2"; gene_id "STRG.8881"; exon_number "6"; +2 StringTie exon 121243894 121244096 . - . transcript_id "STRG.8881.2"; gene_id "STRG.8881"; exon_number "7"; +2 StringTie exon 121247501 121247595 . - . transcript_id "STRG.8881.2"; gene_id "STRG.8881"; exon_number "8"; +2 StringTie exon 121248164 121248290 . - . transcript_id "STRG.8881.2"; gene_id "STRG.8881"; exon_number "9"; +2 StringTie exon 121251868 121252034 . - . transcript_id "STRG.8881.2"; gene_id "STRG.8881"; exon_number "10"; +2 StringTie exon 121253602 121253731 . - . transcript_id "STRG.8881.2"; gene_id "STRG.8881"; exon_number "11"; +2 StringTie exon 121256522 121256680 . - . transcript_id "STRG.8881.2"; gene_id "STRG.8881"; exon_number "12"; +2 StringTie exon 121259144 121259268 . - . transcript_id "STRG.8881.2"; gene_id "STRG.8881"; exon_number "13"; +2 StringTie exon 121269904 121269988 . - . transcript_id "STRG.8881.2"; gene_id "STRG.8881"; exon_number "14"; +2 StringTie exon 121270219 121270286 . - . transcript_id "STRG.8881.2"; gene_id "STRG.8881"; exon_number "15"; +2 StringTie transcript 121216143 121271321 . - . transcript_id "STRG.8881.1"; gene_id "STRG.8881"; gene_name "Trp53bp1"; xloc "XLOC_007155"; ref_gene_id "ENSMUSG00000043909"; cmp_ref "ENSMUST00000131245"; class_code "="; tss_id "TSS16910"; p_id "P8932"; +2 StringTie exon 121216143 121216171 . - . transcript_id "STRG.8881.1"; gene_id "STRG.8881"; exon_number "1"; +2 StringTie exon 121221158 121221250 . - . transcript_id "STRG.8881.1"; gene_id "STRG.8881"; exon_number "2"; +2 StringTie exon 121223705 121223762 . - . transcript_id "STRG.8881.1"; gene_id "STRG.8881"; exon_number "3"; +2 StringTie exon 121227645 121227848 . - . transcript_id "STRG.8881.1"; gene_id "STRG.8881"; exon_number "4"; +2 StringTie exon 121235573 121236869 . - . transcript_id "STRG.8881.1"; gene_id "STRG.8881"; exon_number "5"; +2 StringTie exon 121243894 121244096 . - . transcript_id "STRG.8881.1"; gene_id "STRG.8881"; exon_number "6"; +2 StringTie exon 121247501 121247595 . - . transcript_id "STRG.8881.1"; gene_id "STRG.8881"; exon_number "7"; +2 StringTie exon 121248164 121248290 . - . transcript_id "STRG.8881.1"; gene_id "STRG.8881"; exon_number "8"; +2 StringTie exon 121251868 121252034 . - . transcript_id "STRG.8881.1"; gene_id "STRG.8881"; exon_number "9"; +2 StringTie exon 121253602 121253731 . - . transcript_id "STRG.8881.1"; gene_id "STRG.8881"; exon_number "10"; +2 StringTie exon 121256522 121256680 . - . transcript_id "STRG.8881.1"; gene_id "STRG.8881"; exon_number "11"; +2 StringTie exon 121259144 121259268 . - . transcript_id "STRG.8881.1"; gene_id "STRG.8881"; exon_number "12"; +2 StringTie exon 121269904 121269988 . - . transcript_id "STRG.8881.1"; gene_id "STRG.8881"; exon_number "13"; +2 StringTie exon 121270219 121270309 . - . transcript_id "STRG.8881.1"; gene_id "STRG.8881"; exon_number "14"; +2 StringTie exon 121270524 121270708 . - . transcript_id "STRG.8881.1"; gene_id "STRG.8881"; exon_number "15"; +2 StringTie exon 121271272 121271321 . - . transcript_id "STRG.8881.1"; gene_id "STRG.8881"; exon_number "16"; +2 StringTie transcript 121228369 121235689 . - . transcript_id "STRG.8881.13"; gene_id "STRG.8881"; gene_name "Trp53bp1"; xloc "XLOC_007155"; ref_gene_id "ENSMUSG00000043909"; contained_in "STRG.8881.5"; cmp_ref "ENSMUST00000142400"; class_code "="; tss_id "TSS16911"; p_id "P8931"; +2 StringTie exon 121228369 121228707 . - . transcript_id "STRG.8881.13"; gene_id "STRG.8881"; exon_number "1"; +2 StringTie exon 121235573 121235689 . - . transcript_id "STRG.8881.13"; gene_id "STRG.8881"; exon_number "2"; +2 StringTie transcript 121256514 121271369 . - . transcript_id "STRG.8881.6"; gene_id "STRG.8881"; gene_name "Trp53bp1"; xloc "XLOC_007155"; ref_gene_id "ENSMUSG00000043909"; cmp_ref "ENSMUST00000136617"; class_code "="; tss_id "TSS16910"; +2 StringTie exon 121256514 121256680 . - . transcript_id "STRG.8881.6"; gene_id "STRG.8881"; exon_number "1"; +2 StringTie exon 121259144 121259268 . - . transcript_id "STRG.8881.6"; gene_id "STRG.8881"; exon_number "2"; +2 StringTie exon 121269904 121269988 . - . transcript_id "STRG.8881.6"; gene_id "STRG.8881"; exon_number "3"; +2 StringTie exon 121270219 121270309 . - . transcript_id "STRG.8881.6"; gene_id "STRG.8881"; exon_number "4"; +2 StringTie exon 121270524 121270708 . - . transcript_id "STRG.8881.6"; gene_id "STRG.8881"; exon_number "5"; +2 StringTie exon 121271272 121271369 . - . transcript_id "STRG.8881.6"; gene_id "STRG.8881"; exon_number "6"; +2 StringTie transcript 121258886 121270286 . - . transcript_id "STRG.8881.10"; gene_id "STRG.8881"; gene_name "Trp53bp1"; xloc "XLOC_007155"; ref_gene_id "ENSMUSG00000043909"; cmp_ref "ENSMUST00000131426"; class_code "="; tss_id "TSS16909"; +2 StringTie exon 121258886 121259268 . - . transcript_id "STRG.8881.10"; gene_id "STRG.8881"; exon_number "1"; +2 StringTie exon 121269904 121269988 . - . transcript_id "STRG.8881.10"; gene_id "STRG.8881"; exon_number "2"; +2 StringTie exon 121270219 121270286 . - . transcript_id "STRG.8881.10"; gene_id "STRG.8881"; exon_number "3"; +2 StringTie transcript 121267312 121271361 . - . transcript_id "STRG.8881.8"; gene_id "STRG.8881"; gene_name "Trp53bp1"; xloc "XLOC_007155"; ref_gene_id "ENSMUSG00000043909"; cmp_ref "ENSMUST00000140285"; class_code "="; tss_id "TSS16910"; +2 StringTie exon 121267312 121269988 . - . transcript_id "STRG.8881.8"; gene_id "STRG.8881"; exon_number "1"; +2 StringTie exon 121270219 121270309 . - . transcript_id "STRG.8881.8"; gene_id "STRG.8881"; exon_number "2"; +2 StringTie exon 121270524 121270708 . - . transcript_id "STRG.8881.8"; gene_id "STRG.8881"; exon_number "3"; +2 StringTie exon 121271272 121271361 . - . transcript_id "STRG.8881.8"; gene_id "STRG.8881"; exon_number "4"; +2 StringTie transcript 121269630 121271370 . - . transcript_id "STRG.8881.12"; gene_id "STRG.8881"; gene_name "Trp53bp1"; xloc "XLOC_007155"; ref_gene_id "ENSMUSG00000043909"; cmp_ref "ENSMUST00000124060"; class_code "="; tss_id "TSS16910"; +2 StringTie exon 121269630 121269988 . - . transcript_id "STRG.8881.12"; gene_id "STRG.8881"; exon_number "1"; +2 StringTie exon 121270524 121270708 . - . transcript_id "STRG.8881.12"; gene_id "STRG.8881"; exon_number "2"; +2 StringTie exon 121271272 121271370 . - . transcript_id "STRG.8881.12"; gene_id "STRG.8881"; exon_number "3"; +3 StringTie transcript 57736062 57835231 . + . transcript_id "STRG.12098.3"; gene_id "STRG.12098"; gene_name "Rnf13"; xloc "XLOC_007425"; ref_gene_id "ENSMUSG00000036503"; cmp_ref "ENSMUST00000041826"; class_code "="; tss_id "TSS17634"; p_id "P9318"; +3 StringTie exon 57736062 57736200 . + . transcript_id "STRG.12098.3"; gene_id "STRG.12098"; exon_number "1"; +3 StringTie exon 57764257 57764382 . + . transcript_id "STRG.12098.3"; gene_id "STRG.12098"; exon_number "2"; +3 StringTie exon 57769040 57769120 . + . transcript_id "STRG.12098.3"; gene_id "STRG.12098"; exon_number "3"; +3 StringTie exon 57779383 57779508 . + . transcript_id "STRG.12098.3"; gene_id "STRG.12098"; exon_number "4"; +3 StringTie exon 57796198 57796285 . + . transcript_id "STRG.12098.3"; gene_id "STRG.12098"; exon_number "5"; +3 StringTie exon 57802447 57802537 . + . transcript_id "STRG.12098.3"; gene_id "STRG.12098"; exon_number "6"; +3 StringTie exon 57807022 57807127 . + . transcript_id "STRG.12098.3"; gene_id "STRG.12098"; exon_number "7"; +3 StringTie exon 57820507 57820600 . + . transcript_id "STRG.12098.3"; gene_id "STRG.12098"; exon_number "8"; +3 StringTie exon 57832964 57833044 . + . transcript_id "STRG.12098.3"; gene_id "STRG.12098"; exon_number "9"; +3 StringTie exon 57833486 57835231 . + . transcript_id "STRG.12098.3"; gene_id "STRG.12098"; exon_number "10"; +3 StringTie transcript 57736082 57833888 . + . transcript_id "STRG.12098.6"; gene_id "STRG.12098"; gene_name "Rnf13"; xloc "XLOC_007425"; ref_gene_id "ENSMUSG00000036503"; cmp_ref "ENSMUST00000197920"; class_code "="; tss_id "TSS17634"; +3 StringTie exon 57736082 57736200 . + . transcript_id "STRG.12098.6"; gene_id "STRG.12098"; exon_number "1"; +3 StringTie exon 57833573 57833888 . + . transcript_id "STRG.12098.6"; gene_id "STRG.12098"; exon_number "2"; +3 StringTie transcript 57736082 57835233 . + . transcript_id "STRG.12098.2"; gene_id "STRG.12098"; gene_name "Rnf13"; xloc "XLOC_007425"; ref_gene_id "ENSMUSG00000036503"; cmp_ref "ENSMUST00000200497"; class_code "="; tss_id "TSS17634"; p_id "P9319"; +3 StringTie exon 57736082 57736200 . + . transcript_id "STRG.12098.2"; gene_id "STRG.12098"; exon_number "1"; +3 StringTie exon 57764257 57764382 . + . transcript_id "STRG.12098.2"; gene_id "STRG.12098"; exon_number "2"; +3 StringTie exon 57769040 57769120 . + . transcript_id "STRG.12098.2"; gene_id "STRG.12098"; exon_number "3"; +3 StringTie exon 57779383 57779508 . + . transcript_id "STRG.12098.2"; gene_id "STRG.12098"; exon_number "4"; +3 StringTie exon 57796198 57796285 . + . transcript_id "STRG.12098.2"; gene_id "STRG.12098"; exon_number "5"; +3 StringTie exon 57802447 57802537 . + . transcript_id "STRG.12098.2"; gene_id "STRG.12098"; exon_number "6"; +3 StringTie exon 57807022 57807127 . + . transcript_id "STRG.12098.2"; gene_id "STRG.12098"; exon_number "7"; +3 StringTie exon 57820507 57820600 . + . transcript_id "STRG.12098.2"; gene_id "STRG.12098"; exon_number "8"; +3 StringTie exon 57832964 57833044 . + . transcript_id "STRG.12098.2"; gene_id "STRG.12098"; exon_number "9"; +3 StringTie exon 57833573 57835233 . + . transcript_id "STRG.12098.2"; gene_id "STRG.12098"; exon_number "10"; +3 StringTie transcript 57736113 57835119 . + . transcript_id "STRG.12098.1"; gene_id "STRG.12098"; gene_name "Rnf13"; xloc "XLOC_007425"; ref_gene_id "ENSMUSG00000036503"; cmp_ref "ENSMUST00000197205"; class_code "="; tss_id "TSS17634"; p_id "P9321"; +3 StringTie exon 57736113 57736200 . + . transcript_id "STRG.12098.1"; gene_id "STRG.12098"; exon_number "1"; +3 StringTie exon 57764257 57764382 . + . transcript_id "STRG.12098.1"; gene_id "STRG.12098"; exon_number "2"; +3 StringTie exon 57769040 57769120 . + . transcript_id "STRG.12098.1"; gene_id "STRG.12098"; exon_number "3"; +3 StringTie exon 57779383 57779508 . + . transcript_id "STRG.12098.1"; gene_id "STRG.12098"; exon_number "4"; +3 StringTie exon 57796198 57796285 . + . transcript_id "STRG.12098.1"; gene_id "STRG.12098"; exon_number "5"; +3 StringTie exon 57801718 57802537 . + . transcript_id "STRG.12098.1"; gene_id "STRG.12098"; exon_number "6"; +3 StringTie exon 57807022 57807127 . + . transcript_id "STRG.12098.1"; gene_id "STRG.12098"; exon_number "7"; +3 StringTie exon 57820507 57820600 . + . transcript_id "STRG.12098.1"; gene_id "STRG.12098"; exon_number "8"; +3 StringTie exon 57832964 57833044 . + . transcript_id "STRG.12098.1"; gene_id "STRG.12098"; exon_number "9"; +3 StringTie exon 57833486 57835119 . + . transcript_id "STRG.12098.1"; gene_id "STRG.12098"; exon_number "10"; +3 StringTie transcript 57736120 57820993 . + . transcript_id "STRG.12098.5"; gene_id "STRG.12098"; gene_name "Rnf13"; xloc "XLOC_007425"; cmp_ref "ENSMUST00000197205"; class_code "j"; tss_id "TSS17634"; +3 StringTie exon 57736120 57736200 . + . transcript_id "STRG.12098.5"; gene_id "STRG.12098"; exon_number "1"; +3 StringTie exon 57747891 57748034 . + . transcript_id "STRG.12098.5"; gene_id "STRG.12098"; exon_number "2"; +3 StringTie exon 57764257 57764382 . + . transcript_id "STRG.12098.5"; gene_id "STRG.12098"; exon_number "3"; +3 StringTie exon 57769040 57769120 . + . transcript_id "STRG.12098.5"; gene_id "STRG.12098"; exon_number "4"; +3 StringTie exon 57779383 57779508 . + . transcript_id "STRG.12098.5"; gene_id "STRG.12098"; exon_number "5"; +3 StringTie exon 57796198 57796285 . + . transcript_id "STRG.12098.5"; gene_id "STRG.12098"; exon_number "6"; +3 StringTie exon 57802447 57802537 . + . transcript_id "STRG.12098.5"; gene_id "STRG.12098"; exon_number "7"; +3 StringTie exon 57807022 57807127 . + . transcript_id "STRG.12098.5"; gene_id "STRG.12098"; exon_number "8"; +3 StringTie exon 57820507 57820993 . + . transcript_id "STRG.12098.5"; gene_id "STRG.12098"; exon_number "9"; +3 StringTie transcript 57736120 57833232 . + . transcript_id "STRG.12098.4"; gene_id "STRG.12098"; gene_name "Rnf13"; xloc "XLOC_007425"; ref_gene_id "ENSMUSG00000036503"; cmp_ref "ENSMUST00000199041"; class_code "="; tss_id "TSS17634"; p_id "P9320"; +3 StringTie exon 57736120 57736200 . + . transcript_id "STRG.12098.4"; gene_id "STRG.12098"; exon_number "1"; +3 StringTie exon 57764257 57764382 . + . transcript_id "STRG.12098.4"; gene_id "STRG.12098"; exon_number "2"; +3 StringTie exon 57769040 57769120 . + . transcript_id "STRG.12098.4"; gene_id "STRG.12098"; exon_number "3"; +3 StringTie exon 57779383 57779508 . + . transcript_id "STRG.12098.4"; gene_id "STRG.12098"; exon_number "4"; +3 StringTie exon 57796198 57796285 . + . transcript_id "STRG.12098.4"; gene_id "STRG.12098"; exon_number "5"; +3 StringTie exon 57802447 57802537 . + . transcript_id "STRG.12098.4"; gene_id "STRG.12098"; exon_number "6"; +3 StringTie exon 57807022 57807127 . + . transcript_id "STRG.12098.4"; gene_id "STRG.12098"; exon_number "7"; +3 StringTie exon 57820507 57820600 . + . transcript_id "STRG.12098.4"; gene_id "STRG.12098"; exon_number "8"; +3 StringTie exon 57832964 57833232 . + . transcript_id "STRG.12098.4"; gene_id "STRG.12098"; exon_number "9"; +3 StringTie transcript 57644349 57651715 . - . transcript_id "STRG.12092.1"; gene_id "STRG.12092"; gene_name "Commd2"; xloc "XLOC_007733"; ref_gene_id "ENSMUSG00000036513"; cmp_ref "ENSMUST00000160959"; class_code "="; tss_id "TSS18453"; p_id "P9796"; +3 StringTie exon 57644349 57646876 . - . transcript_id "STRG.12092.1"; gene_id "STRG.12092"; exon_number "1"; +3 StringTie exon 57650042 57650215 . - . transcript_id "STRG.12092.1"; gene_id "STRG.12092"; exon_number "2"; +3 StringTie exon 57650691 57650773 . - . transcript_id "STRG.12092.1"; gene_id "STRG.12092"; exon_number "3"; +3 StringTie exon 57651422 57651499 . - . transcript_id "STRG.12092.1"; gene_id "STRG.12092"; exon_number "4"; +3 StringTie exon 57651587 57651715 . - . transcript_id "STRG.12092.1"; gene_id "STRG.12092"; exon_number "5"; +3 StringTie transcript 57651102 57651715 . - . transcript_id "STRG.12092.2"; gene_id "STRG.12092"; gene_name "Commd2"; xloc "XLOC_007733"; ref_gene_id "ENSMUSG00000036513"; cmp_ref "ENSMUST00000163087"; class_code "="; tss_id "TSS18453"; +3 StringTie exon 57651102 57651499 . - . transcript_id "STRG.12092.2"; gene_id "STRG.12092"; exon_number "1"; +3 StringTie exon 57651587 57651715 . - . transcript_id "STRG.12092.2"; gene_id "STRG.12092"; exon_number "2"; +5 StringTie transcript 110839983 110874133 . + . transcript_id "STRG.22906.2"; gene_id "STRG.22906"; gene_name "Chek2"; xloc "XLOC_009008"; ref_gene_id "ENSMUSG00000029521"; cmp_ref "ENSMUST00000199937"; class_code "="; tss_id "TSS21738"; p_id "P11495"; +5 StringTie exon 110839983 110840048 . + . transcript_id "STRG.22906.2"; gene_id "STRG.22906"; exon_number "1"; +5 StringTie exon 110841206 110841543 . + . transcript_id "STRG.22906.2"; gene_id "STRG.22906"; exon_number "2"; +5 StringTie exon 110848389 110848513 . + . transcript_id "STRG.22906.2"; gene_id "STRG.22906"; exon_number "3"; +5 StringTie exon 110848630 110848777 . + . transcript_id "STRG.22906.2"; gene_id "STRG.22906"; exon_number "4"; +5 StringTie exon 110855725 110855833 . + . transcript_id "STRG.22906.2"; gene_id "STRG.22906"; exon_number "5"; +5 StringTie exon 110858374 110858427 . + . transcript_id "STRG.22906.2"; gene_id "STRG.22906"; exon_number "6"; +5 StringTie exon 110860863 110860924 . + . transcript_id "STRG.22906.2"; gene_id "STRG.22906"; exon_number "7"; +5 StringTie exon 110863258 110863357 . + . transcript_id "STRG.22906.2"; gene_id "STRG.22906"; exon_number "8"; +5 StringTie exon 110865522 110865608 . + . transcript_id "STRG.22906.2"; gene_id "STRG.22906"; exon_number "9"; +5 StringTie exon 110866263 110866426 . + . transcript_id "STRG.22906.2"; gene_id "STRG.22906"; exon_number "10"; +5 StringTie exon 110866938 110867053 . + . transcript_id "STRG.22906.2"; gene_id "STRG.22906"; exon_number "11"; +5 StringTie exon 110868008 110868093 . + . transcript_id "STRG.22906.2"; gene_id "STRG.22906"; exon_number "12"; +5 StringTie exon 110872027 110872107 . + . transcript_id "STRG.22906.2"; gene_id "STRG.22906"; exon_number "13"; +5 StringTie exon 110873480 110874133 . + . transcript_id "STRG.22906.2"; gene_id "STRG.22906"; exon_number "14"; +5 StringTie transcript 110840000 110874145 . + . transcript_id "STRG.22906.1"; gene_id "STRG.22906"; gene_name "Chek2"; xloc "XLOC_009008"; ref_gene_id "ENSMUSG00000029521"; cmp_ref "ENSMUST00000066160"; class_code "="; tss_id "TSS21738"; p_id "P11494"; +5 StringTie exon 110840000 110840048 . + . transcript_id "STRG.22906.1"; gene_id "STRG.22906"; exon_number "1"; +5 StringTie exon 110841206 110841543 . + . transcript_id "STRG.22906.1"; gene_id "STRG.22906"; exon_number "2"; +5 StringTie exon 110848389 110848513 . + . transcript_id "STRG.22906.1"; gene_id "STRG.22906"; exon_number "3"; +5 StringTie exon 110848630 110848777 . + . transcript_id "STRG.22906.1"; gene_id "STRG.22906"; exon_number "4"; +5 StringTie exon 110849596 110849686 . + . transcript_id "STRG.22906.1"; gene_id "STRG.22906"; exon_number "5"; +5 StringTie exon 110855725 110855833 . + . transcript_id "STRG.22906.1"; gene_id "STRG.22906"; exon_number "6"; +5 StringTie exon 110858374 110858427 . + . transcript_id "STRG.22906.1"; gene_id "STRG.22906"; exon_number "7"; +5 StringTie exon 110860863 110860924 . + . transcript_id "STRG.22906.1"; gene_id "STRG.22906"; exon_number "8"; +5 StringTie exon 110863258 110863357 . + . transcript_id "STRG.22906.1"; gene_id "STRG.22906"; exon_number "9"; +5 StringTie exon 110865522 110865608 . + . transcript_id "STRG.22906.1"; gene_id "STRG.22906"; exon_number "10"; +5 StringTie exon 110866263 110866426 . + . transcript_id "STRG.22906.1"; gene_id "STRG.22906"; exon_number "11"; +5 StringTie exon 110866938 110867053 . + . transcript_id "STRG.22906.1"; gene_id "STRG.22906"; exon_number "12"; +5 StringTie exon 110868008 110868093 . + . transcript_id "STRG.22906.1"; gene_id "STRG.22906"; exon_number "13"; +5 StringTie exon 110872027 110872107 . + . transcript_id "STRG.22906.1"; gene_id "STRG.22906"; exon_number "14"; +5 StringTie exon 110873480 110874145 . + . transcript_id "STRG.22906.1"; gene_id "STRG.22906"; exon_number "15"; +5 StringTie transcript 110840254 110874013 . + . transcript_id "STRG.22906.3"; gene_id "STRG.22906"; gene_name "Chek2"; xloc "XLOC_009008"; cmp_ref "ENSMUST00000066160"; class_code "j"; tss_id "TSS21739"; +5 StringTie exon 110840254 110841543 . + . transcript_id "STRG.22906.3"; gene_id "STRG.22906"; exon_number "1"; +5 StringTie exon 110848389 110848513 . + . transcript_id "STRG.22906.3"; gene_id "STRG.22906"; exon_number "2"; +5 StringTie exon 110848630 110848777 . + . transcript_id "STRG.22906.3"; gene_id "STRG.22906"; exon_number "3"; +5 StringTie exon 110849596 110849686 . + . transcript_id "STRG.22906.3"; gene_id "STRG.22906"; exon_number "4"; +5 StringTie exon 110855725 110855833 . + . transcript_id "STRG.22906.3"; gene_id "STRG.22906"; exon_number "5"; +5 StringTie exon 110858374 110858427 . + . transcript_id "STRG.22906.3"; gene_id "STRG.22906"; exon_number "6"; +5 StringTie exon 110860863 110860924 . + . transcript_id "STRG.22906.3"; gene_id "STRG.22906"; exon_number "7"; +5 StringTie exon 110863258 110863357 . + . transcript_id "STRG.22906.3"; gene_id "STRG.22906"; exon_number "8"; +5 StringTie exon 110865522 110865608 . + . transcript_id "STRG.22906.3"; gene_id "STRG.22906"; exon_number "9"; +5 StringTie exon 110866263 110866426 . + . transcript_id "STRG.22906.3"; gene_id "STRG.22906"; exon_number "10"; +5 StringTie exon 110866938 110867053 . + . transcript_id "STRG.22906.3"; gene_id "STRG.22906"; exon_number "11"; +5 StringTie exon 110868008 110868093 . + . transcript_id "STRG.22906.3"; gene_id "STRG.22906"; exon_number "12"; +5 StringTie exon 110872027 110874013 . + . transcript_id "STRG.22906.3"; gene_id "STRG.22906"; exon_number "13"; +5 StringTie transcript 110855690 110868215 . + . transcript_id "STRG.22906.4"; gene_id "STRG.22906"; gene_name "Chek2"; xloc "XLOC_009008"; cmp_ref "ENSMUST00000066160"; class_code "j"; tss_id "TSS21740"; +5 StringTie exon 110855690 110855833 . + . transcript_id "STRG.22906.4"; gene_id "STRG.22906"; exon_number "1"; +5 StringTie exon 110858374 110858427 . + . transcript_id "STRG.22906.4"; gene_id "STRG.22906"; exon_number "2"; +5 StringTie exon 110860863 110860924 . + . transcript_id "STRG.22906.4"; gene_id "STRG.22906"; exon_number "3"; +5 StringTie exon 110863258 110863357 . + . transcript_id "STRG.22906.4"; gene_id "STRG.22906"; exon_number "4"; +5 StringTie exon 110865522 110865608 . + . transcript_id "STRG.22906.4"; gene_id "STRG.22906"; exon_number "5"; +5 StringTie exon 110868008 110868215 . + . transcript_id "STRG.22906.4"; gene_id "STRG.22906"; exon_number "6"; +5 StringTie transcript 110866271 110866720 . + . transcript_id "STRG.22906.5"; gene_id "STRG.22906"; gene_name "Chek2"; xloc "XLOC_009008"; ref_gene_id "ENSMUSG00000029521"; cmp_ref "ENSMUST00000196650"; class_code "="; tss_id "TSS21741"; +5 StringTie exon 110866271 110866426 . + . transcript_id "STRG.22906.5"; gene_id "STRG.22906"; exon_number "1"; +5 StringTie exon 110866536 110866720 . + . transcript_id "STRG.22906.5"; gene_id "STRG.22906"; exon_number "2"; +5 StringTie transcript 110892839 111085034 . + . transcript_id "STRG.22909.1"; gene_id "STRG.22909"; gene_name "Ttc28"; xloc "XLOC_009009"; cmp_ref "ENSMUST00000040111"; class_code "c"; tss_id "TSS21742"; +5 StringTie exon 110892839 110893110 . + . transcript_id "STRG.22909.1"; gene_id "STRG.22909"; exon_number "1"; +5 StringTie exon 111085022 111085034 . + . transcript_id "STRG.22909.1"; gene_id "STRG.22909"; exon_number "2"; +5 StringTie transcript 111100698 111102068 . + . transcript_id "STRG.22913.1"; gene_id "STRG.22913"; gene_name "Ttc28"; xloc "XLOC_009009"; cmp_ref "ENSMUST00000040111"; class_code "c"; tss_id "TSS21743"; +5 StringTie exon 111100698 111100966 . + . transcript_id "STRG.22913.1"; gene_id "STRG.22913"; exon_number "1"; +5 StringTie exon 111101970 111102068 . + . transcript_id "STRG.22913.1"; gene_id "STRG.22913"; exon_number "2"; +5 StringTie transcript 111225458 111229415 . + . transcript_id "STRG.22916.1"; gene_id "STRG.22916"; gene_name "Ttc28"; xloc "XLOC_009009"; ref_gene_id "ENSMUSG00000033209"; cmp_ref "ENSMUST00000125470"; class_code "="; tss_id "TSS21744"; +5 StringTie exon 111225458 111226081 . + . transcript_id "STRG.22916.1"; gene_id "STRG.22916"; exon_number "1"; +5 StringTie exon 111229348 111229415 . + . transcript_id "STRG.22916.1"; gene_id "STRG.22916"; exon_number "2"; +5 StringTie transcript 111231101 111235600 . + . transcript_id "STRG.22917.1"; gene_id "STRG.22917"; gene_name "Ttc28"; xloc "XLOC_009009"; cmp_ref "ENSMUST00000040111"; class_code "c"; tss_id "TSS21745"; +5 StringTie exon 111231101 111231179 . + . transcript_id "STRG.22917.1"; gene_id "STRG.22917"; exon_number "1"; +5 StringTie exon 111233246 111233464 . + . transcript_id "STRG.22917.1"; gene_id "STRG.22917"; exon_number "2"; +5 StringTie exon 111235476 111235600 . + . transcript_id "STRG.22917.1"; gene_id "STRG.22917"; exon_number "3"; +5 StringTie transcript 111330763 111388359 . + . transcript_id "STRG.22924.1"; gene_id "STRG.22924"; gene_name "Pitpnb"; xloc "XLOC_009010"; ref_gene_id "ENSMUSG00000050017"; cmp_ref "ENSMUST00000086635"; class_code "="; tss_id "TSS21746"; p_id "P11496"; +5 StringTie exon 111330763 111330833 . + . transcript_id "STRG.22924.1"; gene_id "STRG.22924"; exon_number "1"; +5 StringTie exon 111335495 111335525 . + . transcript_id "STRG.22924.1"; gene_id "STRG.22924"; exon_number "2"; +5 StringTie exon 111338283 111338428 . + . transcript_id "STRG.22924.1"; gene_id "STRG.22924"; exon_number "3"; +5 StringTie exon 111346483 111346574 . + . transcript_id "STRG.22924.1"; gene_id "STRG.22924"; exon_number "4"; +5 StringTie exon 111347120 111347127 . + . transcript_id "STRG.22924.1"; gene_id "STRG.22924"; exon_number "5"; +5 StringTie exon 111347781 111347855 . + . transcript_id "STRG.22924.1"; gene_id "STRG.22924"; exon_number "6"; +5 StringTie exon 111349491 111349574 . + . transcript_id "STRG.22924.1"; gene_id "STRG.22924"; exon_number "7"; +5 StringTie exon 111371312 111371389 . + . transcript_id "STRG.22924.1"; gene_id "STRG.22924"; exon_number "8"; +5 StringTie exon 111380192 111380302 . + . transcript_id "STRG.22924.1"; gene_id "STRG.22924"; exon_number "9"; +5 StringTie exon 111382988 111383110 . + . transcript_id "STRG.22924.1"; gene_id "STRG.22924"; exon_number "10"; +5 StringTie exon 111385520 111385604 . + . transcript_id "STRG.22924.1"; gene_id "STRG.22924"; exon_number "11"; +5 StringTie exon 111386503 111388359 . + . transcript_id "STRG.22924.1"; gene_id "STRG.22924"; exon_number "12"; +5 StringTie transcript 111330807 111388359 . + . transcript_id "STRG.22924.2"; gene_id "STRG.22924"; gene_name "Pitpnb"; xloc "XLOC_009010"; ref_gene_id "ENSMUSG00000050017"; cmp_ref "ENSMUST00000200298"; class_code "="; tss_id "TSS21746"; p_id "P11497"; +5 StringTie exon 111330807 111330833 . + . transcript_id "STRG.22924.2"; gene_id "STRG.22924"; exon_number "1"; +5 StringTie exon 111335495 111335525 . + . transcript_id "STRG.22924.2"; gene_id "STRG.22924"; exon_number "2"; +5 StringTie exon 111338283 111338428 . + . transcript_id "STRG.22924.2"; gene_id "STRG.22924"; exon_number "3"; +5 StringTie exon 111346483 111346574 . + . transcript_id "STRG.22924.2"; gene_id "STRG.22924"; exon_number "4"; +5 StringTie exon 111347120 111347127 . + . transcript_id "STRG.22924.2"; gene_id "STRG.22924"; exon_number "5"; +5 StringTie exon 111347781 111347855 . + . transcript_id "STRG.22924.2"; gene_id "STRG.22924"; exon_number "6"; +5 StringTie exon 111349491 111349574 . + . transcript_id "STRG.22924.2"; gene_id "STRG.22924"; exon_number "7"; +5 StringTie exon 111371312 111371389 . + . transcript_id "STRG.22924.2"; gene_id "STRG.22924"; exon_number "8"; +5 StringTie exon 111380192 111380302 . + . transcript_id "STRG.22924.2"; gene_id "STRG.22924"; exon_number "9"; +5 StringTie exon 111382988 111383110 . + . transcript_id "STRG.22924.2"; gene_id "STRG.22924"; exon_number "10"; +5 StringTie exon 111386503 111388359 . + . transcript_id "STRG.22924.2"; gene_id "STRG.22924"; exon_number "11"; +5 StringTie transcript 111380169 111383703 . + . transcript_id "STRG.22924.3"; gene_id "STRG.22924"; gene_name "Pitpnb"; xloc "XLOC_009010"; ref_gene_id "ENSMUSG00000050017"; cmp_ref "ENSMUST00000198137"; class_code "="; tss_id "TSS21747"; +5 StringTie exon 111380169 111380302 . + . transcript_id "STRG.22924.3"; gene_id "STRG.22924"; exon_number "1"; +5 StringTie exon 111382988 111383703 . + . transcript_id "STRG.22924.3"; gene_id "STRG.22924"; exon_number "2"; +5 StringTie transcript 111417442 111454864 . + . transcript_id "STRG.22929.1"; gene_id "STRG.22929"; gene_name "Mn1"; xloc "XLOC_009011"; cmp_ref "ENSMUST00000094463"; class_code "j"; tss_id "TSS21748"; +5 StringTie exon 111417442 111417761 . + . transcript_id "STRG.22929.1"; gene_id "STRG.22929"; exon_number "1"; +5 StringTie exon 111419610 111421883 . + . transcript_id "STRG.22929.1"; gene_id "STRG.22929"; exon_number "2"; +5 StringTie exon 111454616 111454864 . + . transcript_id "STRG.22929.1"; gene_id "STRG.22929"; exon_number "3"; +5 StringTie transcript 111417442 111457033 . + . transcript_id "STRG.22929.2"; gene_id "STRG.22929"; gene_name "Mn1"; xloc "XLOC_009011"; ref_gene_id "ENSMUSG00000070576"; cmp_ref "ENSMUST00000094463"; class_code "="; tss_id "TSS21748"; p_id "P11498"; +5 StringTie exon 111417442 111421883 . + . transcript_id "STRG.22929.2"; gene_id "STRG.22929"; exon_number "1"; +5 StringTie exon 111454616 111457033 . + . transcript_id "STRG.22929.2"; gene_id "STRG.22929"; exon_number "2"; +5 StringTie transcript 111546621 111566751 . + . transcript_id "STRG.22958.1"; gene_id "STRG.22958"; xloc "XLOC_009012"; class_code "u"; tss_id "TSS21749"; +5 StringTie exon 111546621 111546787 . + . transcript_id "STRG.22958.1"; gene_id "STRG.22958"; exon_number "1"; +5 StringTie exon 111553852 111553928 . + . transcript_id "STRG.22958.1"; gene_id "STRG.22958"; exon_number "2"; +5 StringTie exon 111562387 111564386 . + . transcript_id "STRG.22958.1"; gene_id "STRG.22958"; exon_number "3"; +5 StringTie exon 111565966 111566751 . + . transcript_id "STRG.22958.1"; gene_id "STRG.22958"; exon_number "4"; +5 StringTie transcript 111553370 111564411 . + . transcript_id "STRG.22958.2"; gene_id "STRG.22958"; xloc "XLOC_009012"; class_code "u"; tss_id "TSS21750"; +5 StringTie exon 111553370 111553928 . + . transcript_id "STRG.22958.2"; gene_id "STRG.22958"; exon_number "1"; +5 StringTie exon 111562387 111563609 . + . transcript_id "STRG.22958.2"; gene_id "STRG.22958"; exon_number "2"; +5 StringTie exon 111564163 111564411 . + . transcript_id "STRG.22958.2"; gene_id "STRG.22958"; exon_number "3"; +5 StringTie transcript 111553370 111567041 . + . transcript_id "STRG.22958.3"; gene_id "STRG.22958"; xloc "XLOC_009012"; class_code "u"; tss_id "TSS21750"; +5 StringTie exon 111553370 111553928 . + . transcript_id "STRG.22958.3"; gene_id "STRG.22958"; exon_number "1"; +5 StringTie exon 111562387 111564386 . + . transcript_id "STRG.22958.3"; gene_id "STRG.22958"; exon_number "2"; +5 StringTie exon 111565037 111567041 . + . transcript_id "STRG.22958.3"; gene_id "STRG.22958"; exon_number "3"; +5 StringTie transcript 111581568 111582873 . + . transcript_id "STRG.22963.1"; gene_id "STRG.22963"; gene_name "C130026L21Rik"; xloc "XLOC_009013"; ref_gene_id "ENSMUSG00000052848"; cmp_ref "ENSMUST00000196725"; class_code "="; tss_id "TSS21751"; +5 StringTie exon 111581568 111581870 . + . transcript_id "STRG.22963.1"; gene_id "STRG.22963"; exon_number "1"; +5 StringTie exon 111582421 111582873 . + . transcript_id "STRG.22963.1"; gene_id "STRG.22963"; exon_number "2"; +5 StringTie transcript 112276691 112315361 . + . transcript_id "STRG.22971.1"; gene_id "STRG.22971"; gene_name "Tpst2"; xloc "XLOC_009014"; ref_gene_id "ENSMUSG00000029344"; cmp_ref "ENSMUST00000031287"; class_code "="; tss_id "TSS21752"; p_id "P11499"; +5 StringTie exon 112276691 112276771 . + . transcript_id "STRG.22971.1"; gene_id "STRG.22971"; exon_number "1"; +5 StringTie exon 112303900 112303971 . + . transcript_id "STRG.22971.1"; gene_id "STRG.22971"; exon_number "2"; +5 StringTie exon 112307566 112308477 . + . transcript_id "STRG.22971.1"; gene_id "STRG.22971"; exon_number "3"; +5 StringTie exon 112309689 112309887 . + . transcript_id "STRG.22971.1"; gene_id "STRG.22971"; exon_number "4"; +5 StringTie exon 112311684 112311734 . + . transcript_id "STRG.22971.1"; gene_id "STRG.22971"; exon_number "5"; +5 StringTie exon 112313242 112313290 . + . transcript_id "STRG.22971.1"; gene_id "STRG.22971"; exon_number "6"; +5 StringTie exon 112314891 112315361 . + . transcript_id "STRG.22971.1"; gene_id "STRG.22971"; exon_number "7"; +5 StringTie transcript 112276704 112309032 . + . transcript_id "STRG.22971.3"; gene_id "STRG.22971"; gene_name "Tpst2"; xloc "XLOC_009014"; ref_gene_id "ENSMUSG00000029344"; cmp_ref "ENSMUST00000134071"; class_code "="; tss_id "TSS21752"; +5 StringTie exon 112276704 112276771 . + . transcript_id "STRG.22971.3"; gene_id "STRG.22971"; exon_number "1"; +5 StringTie exon 112303900 112303971 . + . transcript_id "STRG.22971.3"; gene_id "STRG.22971"; exon_number "2"; +5 StringTie exon 112307566 112309032 . + . transcript_id "STRG.22971.3"; gene_id "STRG.22971"; exon_number "3"; +5 StringTie transcript 112276707 112315355 . + . transcript_id "STRG.22971.2"; gene_id "STRG.22971"; gene_name "Tpst2"; xloc "XLOC_009014"; ref_gene_id "ENSMUSG00000029344"; cmp_ref "ENSMUST00000071455"; class_code "="; tss_id "TSS21752"; p_id "P11499"; +5 StringTie exon 112276707 112276771 . + . transcript_id "STRG.22971.2"; gene_id "STRG.22971"; exon_number "1"; +5 StringTie exon 112307566 112308477 . + . transcript_id "STRG.22971.2"; gene_id "STRG.22971"; exon_number "2"; +5 StringTie exon 112309689 112309887 . + . transcript_id "STRG.22971.2"; gene_id "STRG.22971"; exon_number "3"; +5 StringTie exon 112311684 112311734 . + . transcript_id "STRG.22971.2"; gene_id "STRG.22971"; exon_number "4"; +5 StringTie exon 112313242 112313290 . + . transcript_id "STRG.22971.2"; gene_id "STRG.22971"; exon_number "5"; +5 StringTie exon 112314891 112315355 . + . transcript_id "STRG.22971.2"; gene_id "STRG.22971"; exon_number "6"; +5 StringTie transcript 112308291 112309812 . + . transcript_id "STRG.22971.5"; gene_id "STRG.22971"; gene_name "Tpst2"; xloc "XLOC_009014"; ref_gene_id "ENSMUSG00000029344"; cmp_ref "ENSMUST00000140262"; class_code "="; tss_id "TSS21753"; p_id "P11500"; +5 StringTie exon 112308291 112308554 . + . transcript_id "STRG.22971.5"; gene_id "STRG.22971"; exon_number "1"; +5 StringTie exon 112309689 112309812 . + . transcript_id "STRG.22971.5"; gene_id "STRG.22971"; exon_number "2"; +5 StringTie transcript 112312894 112314964 . + . transcript_id "STRG.22971.4"; gene_id "STRG.22971"; gene_name "Tpst2"; xloc "XLOC_009014"; ref_gene_id "ENSMUSG00000029344"; cmp_ref "ENSMUST00000139482"; class_code "="; tss_id "TSS21754"; +5 StringTie exon 112312894 112313290 . + . transcript_id "STRG.22971.4"; gene_id "STRG.22971"; exon_number "1"; +5 StringTie exon 112314891 112314964 . + . transcript_id "STRG.22971.4"; gene_id "STRG.22971"; exon_number "2"; +5 StringTie transcript 112326358 112338073 . + . transcript_id "STRG.22973.1"; gene_id "STRG.22973"; gene_name "Tfip11"; xloc "XLOC_009015"; ref_gene_id "ENSMUSG00000029345"; cmp_ref "ENSMUST00000031288"; class_code "="; tss_id "TSS21755"; p_id "P11501"; +5 StringTie exon 112326358 112326473 . + . transcript_id "STRG.22973.1"; gene_id "STRG.22973"; exon_number "1"; +5 StringTie exon 112327485 112327670 . + . transcript_id "STRG.22973.1"; gene_id "STRG.22973"; exon_number "2"; +5 StringTie exon 112327962 112328182 . + . transcript_id "STRG.22973.1"; gene_id "STRG.22973"; exon_number "3"; +5 StringTie exon 112329366 112329519 . + . transcript_id "STRG.22973.1"; gene_id "STRG.22973"; exon_number "4"; +5 StringTie exon 112329747 112329903 . + . transcript_id "STRG.22973.1"; gene_id "STRG.22973"; exon_number "5"; +5 StringTie exon 112331091 112331218 . + . transcript_id "STRG.22973.1"; gene_id "STRG.22973"; exon_number "6"; +5 StringTie exon 112331868 112332020 . + . transcript_id "STRG.22973.1"; gene_id "STRG.22973"; exon_number "7"; +5 StringTie exon 112332964 112333491 . + . transcript_id "STRG.22973.1"; gene_id "STRG.22973"; exon_number "8"; +5 StringTie exon 112333575 112333681 . + . transcript_id "STRG.22973.1"; gene_id "STRG.22973"; exon_number "9"; +5 StringTie exon 112334317 112334485 . + . transcript_id "STRG.22973.1"; gene_id "STRG.22973"; exon_number "10"; +5 StringTie exon 112334860 112335103 . + . transcript_id "STRG.22973.1"; gene_id "STRG.22973"; exon_number "11"; +5 StringTie exon 112335573 112335715 . + . transcript_id "STRG.22973.1"; gene_id "STRG.22973"; exon_number "12"; +5 StringTie exon 112336015 112336180 . + . transcript_id "STRG.22973.1"; gene_id "STRG.22973"; exon_number "13"; +5 StringTie exon 112336986 112338073 . + . transcript_id "STRG.22973.1"; gene_id "STRG.22973"; exon_number "14"; +5 StringTie transcript 112335642 112337273 . + . transcript_id "STRG.22973.2"; gene_id "STRG.22973"; gene_name "Tfip11"; xloc "XLOC_009015"; ref_gene_id "ENSMUSG00000029345"; cmp_ref "ENSMUST00000126736"; class_code "="; tss_id "TSS21756"; +5 StringTie exon 112335642 112336180 . + . transcript_id "STRG.22973.2"; gene_id "STRG.22973"; exon_number "1"; +5 StringTie exon 112336986 112337273 . + . transcript_id "STRG.22973.2"; gene_id "STRG.22973"; exon_number "2"; +5 StringTie transcript 112343083 112378414 . + . transcript_id "STRG.22978.2"; gene_id "STRG.22978"; gene_name "Hps4"; xloc "XLOC_009016"; ref_gene_id "ENSMUSG00000042328"; cmp_ref "ENSMUST00000112359"; class_code "="; tss_id "TSS21757"; p_id "P11502"; +5 StringTie exon 112343083 112343163 . + . transcript_id "STRG.22978.2"; gene_id "STRG.22978"; exon_number "1"; +5 StringTie exon 112344044 112345048 . + . transcript_id "STRG.22978.2"; gene_id "STRG.22978"; exon_number "2"; +5 StringTie exon 112346594 112346684 . + . transcript_id "STRG.22978.2"; gene_id "STRG.22978"; exon_number "3"; +5 StringTie exon 112349285 112349428 . + . transcript_id "STRG.22978.2"; gene_id "STRG.22978"; exon_number "4"; +5 StringTie exon 112363109 112363216 . + . transcript_id "STRG.22978.2"; gene_id "STRG.22978"; exon_number "5"; +5 StringTie exon 112363546 112363662 . + . transcript_id "STRG.22978.2"; gene_id "STRG.22978"; exon_number "6"; +5 StringTie exon 112364521 112364615 . + . transcript_id "STRG.22978.2"; gene_id "STRG.22978"; exon_number "7"; +5 StringTie exon 112366899 112366971 . + . transcript_id "STRG.22978.2"; gene_id "STRG.22978"; exon_number "8"; +5 StringTie exon 112368936 112368972 . + . transcript_id "STRG.22978.2"; gene_id "STRG.22978"; exon_number "9"; +5 StringTie exon 112369455 112369551 . + . transcript_id "STRG.22978.2"; gene_id "STRG.22978"; exon_number "10"; +5 StringTie exon 112369946 112370744 . + . transcript_id "STRG.22978.2"; gene_id "STRG.22978"; exon_number "11"; +5 StringTie exon 112374880 112375012 . + . transcript_id "STRG.22978.2"; gene_id "STRG.22978"; exon_number "12"; +5 StringTie exon 112375353 112375461 . + . transcript_id "STRG.22978.2"; gene_id "STRG.22978"; exon_number "13"; +5 StringTie exon 112377959 112378414 . + . transcript_id "STRG.22978.2"; gene_id "STRG.22978"; exon_number "14"; +5 StringTie transcript 112343093 112344747 . + . transcript_id "STRG.22978.3"; gene_id "STRG.22978"; gene_name "Hps4"; xloc "XLOC_009016"; ref_gene_id "ENSMUSG00000042328"; cmp_ref "ENSMUST00000176737"; class_code "="; tss_id "TSS21757"; +5 StringTie exon 112343093 112343122 . + . transcript_id "STRG.22978.3"; gene_id "STRG.22978"; exon_number "1"; +5 StringTie exon 112344044 112344747 . + . transcript_id "STRG.22978.3"; gene_id "STRG.22978"; exon_number "2"; +5 StringTie transcript 112343095 112378414 . + . transcript_id "STRG.22978.1"; gene_id "STRG.22978"; gene_name "Hps4"; xloc "XLOC_009016"; ref_gene_id "ENSMUSG00000042328"; cmp_ref "ENSMUST00000035279"; class_code "="; tss_id "TSS21757"; p_id "P11502"; +5 StringTie exon 112343095 112343163 . + . transcript_id "STRG.22978.1"; gene_id "STRG.22978"; exon_number "1"; +5 StringTie exon 112344541 112345048 . + . transcript_id "STRG.22978.1"; gene_id "STRG.22978"; exon_number "2"; +5 StringTie exon 112346594 112346684 . + . transcript_id "STRG.22978.1"; gene_id "STRG.22978"; exon_number "3"; +5 StringTie exon 112349285 112349428 . + . transcript_id "STRG.22978.1"; gene_id "STRG.22978"; exon_number "4"; +5 StringTie exon 112363109 112363216 . + . transcript_id "STRG.22978.1"; gene_id "STRG.22978"; exon_number "5"; +5 StringTie exon 112363546 112363662 . + . transcript_id "STRG.22978.1"; gene_id "STRG.22978"; exon_number "6"; +5 StringTie exon 112364521 112364615 . + . transcript_id "STRG.22978.1"; gene_id "STRG.22978"; exon_number "7"; +5 StringTie exon 112366899 112366971 . + . transcript_id "STRG.22978.1"; gene_id "STRG.22978"; exon_number "8"; +5 StringTie exon 112368936 112368972 . + . transcript_id "STRG.22978.1"; gene_id "STRG.22978"; exon_number "9"; +5 StringTie exon 112369455 112369551 . + . transcript_id "STRG.22978.1"; gene_id "STRG.22978"; exon_number "10"; +5 StringTie exon 112369946 112370744 . + . transcript_id "STRG.22978.1"; gene_id "STRG.22978"; exon_number "11"; +5 StringTie exon 112374880 112375012 . + . transcript_id "STRG.22978.1"; gene_id "STRG.22978"; exon_number "12"; +5 StringTie exon 112375353 112375461 . + . transcript_id "STRG.22978.1"; gene_id "STRG.22978"; exon_number "13"; +5 StringTie exon 112377959 112378414 . + . transcript_id "STRG.22978.1"; gene_id "STRG.22978"; exon_number "14"; +5 StringTie transcript 112343099 112344747 . + . transcript_id "STRG.22978.6"; gene_id "STRG.22978"; gene_name "Hps4"; xloc "XLOC_009016"; cmp_ref "ENSMUST00000133708"; class_code "c"; tss_id "TSS21757"; +5 StringTie exon 112343099 112343122 . + . transcript_id "STRG.22978.6"; gene_id "STRG.22978"; exon_number "1"; +5 StringTie exon 112344541 112344747 . + . transcript_id "STRG.22978.6"; gene_id "STRG.22978"; exon_number "2"; +5 StringTie transcript 112368745 112369774 . + . transcript_id "STRG.22978.5"; gene_id "STRG.22978"; gene_name "Hps4"; xloc "XLOC_009016"; ref_gene_id "ENSMUSG00000042328"; cmp_ref "ENSMUST00000129839"; class_code "="; tss_id "TSS21758"; +5 StringTie exon 112368745 112368972 . + . transcript_id "STRG.22978.5"; gene_id "STRG.22978"; exon_number "1"; +5 StringTie exon 112369455 112369774 . + . transcript_id "STRG.22978.5"; gene_id "STRG.22978"; exon_number "2"; +5 StringTie transcript 112375335 112378401 . + . transcript_id "STRG.22978.4"; gene_id "STRG.22978"; gene_name "Hps4"; xloc "XLOC_009016"; ref_gene_id "ENSMUSG00000042328"; cmp_ref "ENSMUST00000177121"; class_code "="; tss_id "TSS21759"; +5 StringTie exon 112375335 112375461 . + . transcript_id "STRG.22978.4"; gene_id "STRG.22978"; exon_number "1"; +5 StringTie exon 112377959 112378401 . + . transcript_id "STRG.22978.4"; gene_id "STRG.22978"; exon_number "2"; +5 StringTie transcript 112793300 112795691 . + . transcript_id "STRG.22983.1"; gene_id "STRG.22983"; gene_name "1700095B10Rik"; xloc "XLOC_009017"; ref_gene_id "ENSMUSG00000098230"; cmp_ref "ENSMUST00000189538"; class_code "="; tss_id "TSS21760"; +5 StringTie exon 112793300 112793611 . + . transcript_id "STRG.22983.1"; gene_id "STRG.22983"; exon_number "1"; +5 StringTie exon 112795415 112795691 . + . transcript_id "STRG.22983.1"; gene_id "STRG.22983"; exon_number "2"; +5 StringTie transcript 110784488 110810097 . - . transcript_id "STRG.22901.1"; gene_id "STRG.22901"; gene_name "Ulk1"; xloc "XLOC_009424"; ref_gene_id "ENSMUSG00000029512"; cmp_ref "ENSMUST00000031490"; class_code "="; tss_id "TSS22921"; p_id "P12160"; +5 StringTie exon 110784488 110786227 . - . transcript_id "STRG.22901.1"; gene_id "STRG.22901"; exon_number "1"; +5 StringTie exon 110786300 110786435 . - . transcript_id "STRG.22901.1"; gene_id "STRG.22901"; exon_number "2"; +5 StringTie exon 110787084 110787241 . - . transcript_id "STRG.22901.1"; gene_id "STRG.22901"; exon_number "3"; +5 StringTie exon 110787574 110787692 . - . transcript_id "STRG.22901.1"; gene_id "STRG.22901"; exon_number "4"; +5 StringTie exon 110787773 110787945 . - . transcript_id "STRG.22901.1"; gene_id "STRG.22901"; exon_number "5"; +5 StringTie exon 110788110 110788300 . - . transcript_id "STRG.22901.1"; gene_id "STRG.22901"; exon_number "6"; +5 StringTie exon 110788729 110788872 . - . transcript_id "STRG.22901.1"; gene_id "STRG.22901"; exon_number "7"; +5 StringTie exon 110788948 110789057 . - . transcript_id "STRG.22901.1"; gene_id "STRG.22901"; exon_number "8"; +5 StringTie exon 110789342 110789535 . - . transcript_id "STRG.22901.1"; gene_id "STRG.22901"; exon_number "9"; +5 StringTie exon 110790212 110790480 . - . transcript_id "STRG.22901.1"; gene_id "STRG.22901"; exon_number "10"; +5 StringTie exon 110790850 110790936 . - . transcript_id "STRG.22901.1"; gene_id "STRG.22901"; exon_number "11"; +5 StringTie exon 110791052 110791197 . - . transcript_id "STRG.22901.1"; gene_id "STRG.22901"; exon_number "12"; +5 StringTie exon 110791601 110791726 . - . transcript_id "STRG.22901.1"; gene_id "STRG.22901"; exon_number "13"; +5 StringTie exon 110792102 110792191 . - . transcript_id "STRG.22901.1"; gene_id "STRG.22901"; exon_number "14"; +5 StringTie exon 110792397 110792457 . - . transcript_id "STRG.22901.1"; gene_id "STRG.22901"; exon_number "15"; +5 StringTie exon 110792966 110793113 . - . transcript_id "STRG.22901.1"; gene_id "STRG.22901"; exon_number "16"; +5 StringTie exon 110793815 110793903 . - . transcript_id "STRG.22901.1"; gene_id "STRG.22901"; exon_number "17"; +5 StringTie exon 110794193 110794243 . - . transcript_id "STRG.22901.1"; gene_id "STRG.22901"; exon_number "18"; +5 StringTie exon 110794585 110794667 . - . transcript_id "STRG.22901.1"; gene_id "STRG.22901"; exon_number "19"; +5 StringTie exon 110794747 110794805 . - . transcript_id "STRG.22901.1"; gene_id "STRG.22901"; exon_number "20"; +5 StringTie exon 110795732 110795833 . - . transcript_id "STRG.22901.1"; gene_id "STRG.22901"; exon_number "21"; +5 StringTie exon 110796156 110796229 . - . transcript_id "STRG.22901.1"; gene_id "STRG.22901"; exon_number "22"; +5 StringTie exon 110796327 110796500 . - . transcript_id "STRG.22901.1"; gene_id "STRG.22901"; exon_number "23"; +5 StringTie exon 110798882 110798918 . - . transcript_id "STRG.22901.1"; gene_id "STRG.22901"; exon_number "24"; +5 StringTie exon 110799124 110799156 . - . transcript_id "STRG.22901.1"; gene_id "STRG.22901"; exon_number "25"; +5 StringTie exon 110809005 110809046 . - . transcript_id "STRG.22901.1"; gene_id "STRG.22901"; exon_number "26"; +5 StringTie exon 110809127 110809219 . - . transcript_id "STRG.22901.1"; gene_id "STRG.22901"; exon_number "27"; +5 StringTie exon 110809614 110810097 . - . transcript_id "STRG.22901.1"; gene_id "STRG.22901"; exon_number "28"; +5 StringTie transcript 110786039 110787221 . - . transcript_id "STRG.22901.9"; gene_id "STRG.22901"; gene_name "Ulk1"; xloc "XLOC_009424"; ref_gene_id "ENSMUSG00000029512"; cmp_ref "ENSMUST00000199717"; class_code "="; tss_id "TSS22922"; +5 StringTie exon 110786039 110786435 . - . transcript_id "STRG.22901.9"; gene_id "STRG.22901"; exon_number "1"; +5 StringTie exon 110787084 110787221 . - . transcript_id "STRG.22901.9"; gene_id "STRG.22901"; exon_number "2"; +5 StringTie transcript 110786094 110796066 . - . transcript_id "STRG.22901.3"; gene_id "STRG.22901"; gene_name "Ulk1"; xloc "XLOC_009424"; cmp_ref "ENSMUST00000031490"; class_code "j"; tss_id "TSS22923"; +5 StringTie exon 110786094 110786227 . - . transcript_id "STRG.22901.3"; gene_id "STRG.22901"; exon_number "1"; +5 StringTie exon 110786300 110786435 . - . transcript_id "STRG.22901.3"; gene_id "STRG.22901"; exon_number "2"; +5 StringTie exon 110787084 110787241 . - . transcript_id "STRG.22901.3"; gene_id "STRG.22901"; exon_number "3"; +5 StringTie exon 110787574 110787692 . - . transcript_id "STRG.22901.3"; gene_id "STRG.22901"; exon_number "4"; +5 StringTie exon 110787773 110787945 . - . transcript_id "STRG.22901.3"; gene_id "STRG.22901"; exon_number "5"; +5 StringTie exon 110788110 110788300 . - . transcript_id "STRG.22901.3"; gene_id "STRG.22901"; exon_number "6"; +5 StringTie exon 110788729 110788872 . - . transcript_id "STRG.22901.3"; gene_id "STRG.22901"; exon_number "7"; +5 StringTie exon 110788948 110789535 . - . transcript_id "STRG.22901.3"; gene_id "STRG.22901"; exon_number "8"; +5 StringTie exon 110790212 110790480 . - . transcript_id "STRG.22901.3"; gene_id "STRG.22901"; exon_number "9"; +5 StringTie exon 110790850 110790936 . - . transcript_id "STRG.22901.3"; gene_id "STRG.22901"; exon_number "10"; +5 StringTie exon 110791052 110791197 . - . transcript_id "STRG.22901.3"; gene_id "STRG.22901"; exon_number "11"; +5 StringTie exon 110791601 110791726 . - . transcript_id "STRG.22901.3"; gene_id "STRG.22901"; exon_number "12"; +5 StringTie exon 110792102 110792191 . - . transcript_id "STRG.22901.3"; gene_id "STRG.22901"; exon_number "13"; +5 StringTie exon 110792397 110792457 . - . transcript_id "STRG.22901.3"; gene_id "STRG.22901"; exon_number "14"; +5 StringTie exon 110792966 110793113 . - . transcript_id "STRG.22901.3"; gene_id "STRG.22901"; exon_number "15"; +5 StringTie exon 110793815 110793903 . - . transcript_id "STRG.22901.3"; gene_id "STRG.22901"; exon_number "16"; +5 StringTie exon 110794193 110794243 . - . transcript_id "STRG.22901.3"; gene_id "STRG.22901"; exon_number "17"; +5 StringTie exon 110794585 110794667 . - . transcript_id "STRG.22901.3"; gene_id "STRG.22901"; exon_number "18"; +5 StringTie exon 110794747 110794805 . - . transcript_id "STRG.22901.3"; gene_id "STRG.22901"; exon_number "19"; +5 StringTie exon 110795732 110796066 . - . transcript_id "STRG.22901.3"; gene_id "STRG.22901"; exon_number "20"; +5 StringTie transcript 110786094 110810053 . - . transcript_id "STRG.22901.2"; gene_id "STRG.22901"; gene_name "Ulk1"; xloc "XLOC_009424"; ref_gene_id "ENSMUSG00000029512"; cmp_ref "ENSMUST00000200299"; class_code "="; tss_id "TSS22921"; p_id "P12161"; +5 StringTie exon 110786094 110786227 . - . transcript_id "STRG.22901.2"; gene_id "STRG.22901"; exon_number "1"; +5 StringTie exon 110786300 110786435 . - . transcript_id "STRG.22901.2"; gene_id "STRG.22901"; exon_number "2"; +5 StringTie exon 110787084 110787241 . - . transcript_id "STRG.22901.2"; gene_id "STRG.22901"; exon_number "3"; +5 StringTie exon 110787574 110787692 . - . transcript_id "STRG.22901.2"; gene_id "STRG.22901"; exon_number "4"; +5 StringTie exon 110787773 110787945 . - . transcript_id "STRG.22901.2"; gene_id "STRG.22901"; exon_number "5"; +5 StringTie exon 110788110 110788300 . - . transcript_id "STRG.22901.2"; gene_id "STRG.22901"; exon_number "6"; +5 StringTie exon 110788729 110788872 . - . transcript_id "STRG.22901.2"; gene_id "STRG.22901"; exon_number "7"; +5 StringTie exon 110788948 110789057 . - . transcript_id "STRG.22901.2"; gene_id "STRG.22901"; exon_number "8"; +5 StringTie exon 110789342 110789535 . - . transcript_id "STRG.22901.2"; gene_id "STRG.22901"; exon_number "9"; +5 StringTie exon 110790212 110790480 . - . transcript_id "STRG.22901.2"; gene_id "STRG.22901"; exon_number "10"; +5 StringTie exon 110790850 110790954 . - . transcript_id "STRG.22901.2"; gene_id "STRG.22901"; exon_number "11"; +5 StringTie exon 110791052 110791197 . - . transcript_id "STRG.22901.2"; gene_id "STRG.22901"; exon_number "12"; +5 StringTie exon 110791601 110791726 . - . transcript_id "STRG.22901.2"; gene_id "STRG.22901"; exon_number "13"; +5 StringTie exon 110792102 110792191 . - . transcript_id "STRG.22901.2"; gene_id "STRG.22901"; exon_number "14"; +5 StringTie exon 110792397 110792457 . - . transcript_id "STRG.22901.2"; gene_id "STRG.22901"; exon_number "15"; +5 StringTie exon 110792966 110793113 . - . transcript_id "STRG.22901.2"; gene_id "STRG.22901"; exon_number "16"; +5 StringTie exon 110793815 110793903 . - . transcript_id "STRG.22901.2"; gene_id "STRG.22901"; exon_number "17"; +5 StringTie exon 110794193 110794243 . - . transcript_id "STRG.22901.2"; gene_id "STRG.22901"; exon_number "18"; +5 StringTie exon 110794585 110794667 . - . transcript_id "STRG.22901.2"; gene_id "STRG.22901"; exon_number "19"; +5 StringTie exon 110794747 110794805 . - . transcript_id "STRG.22901.2"; gene_id "STRG.22901"; exon_number "20"; +5 StringTie exon 110795732 110795833 . - . transcript_id "STRG.22901.2"; gene_id "STRG.22901"; exon_number "21"; +5 StringTie exon 110796156 110796229 . - . transcript_id "STRG.22901.2"; gene_id "STRG.22901"; exon_number "22"; +5 StringTie exon 110796327 110796500 . - . transcript_id "STRG.22901.2"; gene_id "STRG.22901"; exon_number "23"; +5 StringTie exon 110798882 110798918 . - . transcript_id "STRG.22901.2"; gene_id "STRG.22901"; exon_number "24"; +5 StringTie exon 110799124 110799156 . - . transcript_id "STRG.22901.2"; gene_id "STRG.22901"; exon_number "25"; +5 StringTie exon 110809005 110809046 . - . transcript_id "STRG.22901.2"; gene_id "STRG.22901"; exon_number "26"; +5 StringTie exon 110809127 110809219 . - . transcript_id "STRG.22901.2"; gene_id "STRG.22901"; exon_number "27"; +5 StringTie exon 110809614 110810053 . - . transcript_id "STRG.22901.2"; gene_id "STRG.22901"; exon_number "28"; +5 StringTie transcript 110787891 110788667 . - . transcript_id "STRG.22901.7"; gene_id "STRG.22901"; gene_name "Ulk1"; xloc "XLOC_009424"; ref_gene_id "ENSMUSG00000029512"; cmp_ref "ENSMUST00000199568"; class_code "="; tss_id "TSS22924"; +5 StringTie exon 110787891 110787945 . - . transcript_id "STRG.22901.7"; gene_id "STRG.22901"; exon_number "1"; +5 StringTie exon 110788110 110788667 . - . transcript_id "STRG.22901.7"; gene_id "STRG.22901"; exon_number "2"; +5 StringTie transcript 110791398 110792192 . - . transcript_id "STRG.22901.8"; gene_id "STRG.22901"; gene_name "Ulk1"; xloc "XLOC_009424"; ref_gene_id "ENSMUSG00000029512"; cmp_ref "ENSMUST00000200099"; class_code "="; tss_id "TSS22925"; +5 StringTie exon 110791398 110791726 . - . transcript_id "STRG.22901.8"; gene_id "STRG.22901"; exon_number "1"; +5 StringTie exon 110792102 110792192 . - . transcript_id "STRG.22901.8"; gene_id "STRG.22901"; exon_number "2"; +5 StringTie transcript 110791673 110793405 . - . transcript_id "STRG.22901.6"; gene_id "STRG.22901"; gene_name "Ulk1"; xloc "XLOC_009424"; ref_gene_id "ENSMUSG00000029512"; cmp_ref "ENSMUST00000196883"; class_code "="; tss_id "TSS22926"; +5 StringTie exon 110791673 110791726 . - . transcript_id "STRG.22901.6"; gene_id "STRG.22901"; exon_number "1"; +5 StringTie exon 110792102 110792191 . - . transcript_id "STRG.22901.6"; gene_id "STRG.22901"; exon_number "2"; +5 StringTie exon 110792397 110792457 . - . transcript_id "STRG.22901.6"; gene_id "STRG.22901"; exon_number "3"; +5 StringTie exon 110792966 110793405 . - . transcript_id "STRG.22901.6"; gene_id "STRG.22901"; exon_number "4"; +5 StringTie transcript 110792545 110796066 . - . transcript_id "STRG.22901.5"; gene_id "STRG.22901"; gene_name "Ulk1"; xloc "XLOC_009424"; cmp_ref "ENSMUST00000031490"; class_code "j"; tss_id "TSS22923"; +5 StringTie exon 110792545 110793113 . - . transcript_id "STRG.22901.5"; gene_id "STRG.22901"; exon_number "1"; +5 StringTie exon 110793815 110793903 . - . transcript_id "STRG.22901.5"; gene_id "STRG.22901"; exon_number "2"; +5 StringTie exon 110794193 110794243 . - . transcript_id "STRG.22901.5"; gene_id "STRG.22901"; exon_number "3"; +5 StringTie exon 110794585 110794805 . - . transcript_id "STRG.22901.5"; gene_id "STRG.22901"; exon_number "4"; +5 StringTie exon 110795732 110796066 . - . transcript_id "STRG.22901.5"; gene_id "STRG.22901"; exon_number "5"; +5 StringTie transcript 110793601 110795834 . - . transcript_id "STRG.22901.4"; gene_id "STRG.22901"; gene_name "Ulk1"; xloc "XLOC_009424"; ref_gene_id "ENSMUSG00000029512"; cmp_ref "ENSMUST00000198470"; class_code "="; tss_id "TSS22927"; +5 StringTie exon 110793601 110793903 . - . transcript_id "STRG.22901.4"; gene_id "STRG.22901"; exon_number "1"; +5 StringTie exon 110794193 110794243 . - . transcript_id "STRG.22901.4"; gene_id "STRG.22901"; exon_number "2"; +5 StringTie exon 110794585 110794667 . - . transcript_id "STRG.22901.4"; gene_id "STRG.22901"; exon_number "3"; +5 StringTie exon 110794747 110794805 . - . transcript_id "STRG.22901.4"; gene_id "STRG.22901"; exon_number "4"; +5 StringTie exon 110795732 110795834 . - . transcript_id "STRG.22901.4"; gene_id "STRG.22901"; exon_number "5"; +5 StringTie transcript 110829070 110839777 . - . transcript_id "STRG.22905.1"; gene_id "STRG.22905"; gene_name "Hscb"; xloc "XLOC_009425"; ref_gene_id "ENSMUSG00000043510"; cmp_ref "ENSMUST00000056937"; class_code "="; tss_id "TSS22928"; p_id "P12162"; +5 StringTie exon 110829070 110829211 . - . transcript_id "STRG.22905.1"; gene_id "STRG.22905"; exon_number "1"; +5 StringTie exon 110830936 110830983 . - . transcript_id "STRG.22905.1"; gene_id "STRG.22905"; exon_number "2"; +5 StringTie exon 110834655 110834799 . - . transcript_id "STRG.22905.1"; gene_id "STRG.22905"; exon_number "3"; +5 StringTie exon 110835980 110836069 . - . transcript_id "STRG.22905.1"; gene_id "STRG.22905"; exon_number "4"; +5 StringTie exon 110836307 110836403 . - . transcript_id "STRG.22905.1"; gene_id "STRG.22905"; exon_number "5"; +5 StringTie exon 110839496 110839777 . - . transcript_id "STRG.22905.1"; gene_id "STRG.22905"; exon_number "6"; +5 StringTie transcript 110829080 110836320 . - . transcript_id "STRG.22905.3"; gene_id "STRG.22905"; gene_name "Hscb"; xloc "XLOC_009425"; ref_gene_id "ENSMUSG00000043510"; cmp_ref "ENSMUST00000144850"; class_code "="; tss_id "TSS22929"; p_id "P12163"; +5 StringTie exon 110829080 110829211 . - . transcript_id "STRG.22905.3"; gene_id "STRG.22905"; exon_number "1"; +5 StringTie exon 110830936 110830983 . - . transcript_id "STRG.22905.3"; gene_id "STRG.22905"; exon_number "2"; +5 StringTie exon 110834655 110834799 . - . transcript_id "STRG.22905.3"; gene_id "STRG.22905"; exon_number "3"; +5 StringTie exon 110835975 110836069 . - . transcript_id "STRG.22905.3"; gene_id "STRG.22905"; exon_number "4"; +5 StringTie exon 110836307 110836320 . - . transcript_id "STRG.22905.3"; gene_id "STRG.22905"; exon_number "5"; +5 StringTie transcript 110829080 110839575 . - . transcript_id "STRG.22905.2"; gene_id "STRG.22905"; gene_name "Hscb"; xloc "XLOC_009425"; ref_gene_id "ENSMUSG00000043510"; cmp_ref "ENSMUST00000145318"; class_code "="; tss_id "TSS22930"; p_id "P12164"; +5 StringTie exon 110829080 110829211 . - . transcript_id "STRG.22905.2"; gene_id "STRG.22905"; exon_number "1"; +5 StringTie exon 110830936 110830983 . - . transcript_id "STRG.22905.2"; gene_id "STRG.22905"; exon_number "2"; +5 StringTie exon 110835975 110836069 . - . transcript_id "STRG.22905.2"; gene_id "STRG.22905"; exon_number "3"; +5 StringTie exon 110836307 110836403 . - . transcript_id "STRG.22905.2"; gene_id "STRG.22905"; exon_number "4"; +5 StringTie exon 110839496 110839575 . - . transcript_id "STRG.22905.2"; gene_id "STRG.22905"; exon_number "5"; +5 StringTie transcript 110829081 110834895 . - . transcript_id "STRG.22905.4"; gene_id "STRG.22905"; gene_name "Hscb"; xloc "XLOC_009425"; ref_gene_id "ENSMUSG00000043510"; cmp_ref "ENSMUST00000122921"; class_code "="; tss_id "TSS22931"; +5 StringTie exon 110829081 110829211 . - . transcript_id "STRG.22905.4"; gene_id "STRG.22905"; exon_number "1"; +5 StringTie exon 110830936 110830983 . - . transcript_id "STRG.22905.4"; gene_id "STRG.22905"; exon_number "2"; +5 StringTie exon 110834655 110834895 . - . transcript_id "STRG.22905.4"; gene_id "STRG.22905"; exon_number "3"; +5 StringTie transcript 112337392 112340022 . - . transcript_id "STRG.22974.4"; gene_id "STRG.22974"; gene_name "Srrd"; xloc "XLOC_009426"; ref_gene_id "ENSMUSG00000029346"; cmp_ref "ENSMUST00000155756"; class_code "="; tss_id "TSS22932"; +5 StringTie exon 112337392 112337741 . - . transcript_id "STRG.22974.4"; gene_id "STRG.22974"; exon_number "1"; +5 StringTie exon 112338002 112338047 . - . transcript_id "STRG.22974.4"; gene_id "STRG.22974"; exon_number "2"; +5 StringTie exon 112338318 112338567 . - . transcript_id "STRG.22974.4"; gene_id "STRG.22974"; exon_number "3"; +5 StringTie exon 112339719 112339817 . - . transcript_id "STRG.22974.4"; gene_id "STRG.22974"; exon_number "4"; +5 StringTie exon 112339897 112340022 . - . transcript_id "STRG.22974.4"; gene_id "STRG.22974"; exon_number "5"; +5 StringTie transcript 112337392 112343020 . - . transcript_id "STRG.22974.2"; gene_id "STRG.22974"; gene_name "Srrd"; xloc "XLOC_009426"; ref_gene_id "ENSMUSG00000029346"; cmp_ref "ENSMUST00000146510"; class_code "="; tss_id "TSS22933"; p_id "P12165"; +5 StringTie exon 112337392 112337741 . - . transcript_id "STRG.22974.2"; gene_id "STRG.22974"; exon_number "1"; +5 StringTie exon 112338002 112338047 . - . transcript_id "STRG.22974.2"; gene_id "STRG.22974"; exon_number "2"; +5 StringTie exon 112338318 112338472 . - . transcript_id "STRG.22974.2"; gene_id "STRG.22974"; exon_number "3"; +5 StringTie exon 112339719 112339817 . - . transcript_id "STRG.22974.2"; gene_id "STRG.22974"; exon_number "4"; +5 StringTie exon 112339897 112340123 . - . transcript_id "STRG.22974.2"; gene_id "STRG.22974"; exon_number "5"; +5 StringTie exon 112341096 112341136 . - . transcript_id "STRG.22974.2"; gene_id "STRG.22974"; exon_number "6"; +5 StringTie exon 112342875 112343020 . - . transcript_id "STRG.22974.2"; gene_id "STRG.22974"; exon_number "7"; +5 StringTie transcript 112337392 112343040 . - . transcript_id "STRG.22974.1"; gene_id "STRG.22974"; gene_name "Srrd"; xloc "XLOC_009426"; ref_gene_id "ENSMUSG00000029346"; cmp_ref "ENSMUST00000031289"; class_code "="; tss_id "TSS22933"; p_id "P12166"; +5 StringTie exon 112337392 112337741 . - . transcript_id "STRG.22974.1"; gene_id "STRG.22974"; exon_number "1"; +5 StringTie exon 112337976 112338047 . - . transcript_id "STRG.22974.1"; gene_id "STRG.22974"; exon_number "2"; +5 StringTie exon 112338318 112338472 . - . transcript_id "STRG.22974.1"; gene_id "STRG.22974"; exon_number "3"; +5 StringTie exon 112339719 112339817 . - . transcript_id "STRG.22974.1"; gene_id "STRG.22974"; exon_number "4"; +5 StringTie exon 112339897 112340123 . - . transcript_id "STRG.22974.1"; gene_id "STRG.22974"; exon_number "5"; +5 StringTie exon 112341096 112341136 . - . transcript_id "STRG.22974.1"; gene_id "STRG.22974"; exon_number "6"; +5 StringTie exon 112342875 112343040 . - . transcript_id "STRG.22974.1"; gene_id "STRG.22974"; exon_number "7"; +5 StringTie transcript 112337909 112339932 . - . transcript_id "STRG.22974.5"; gene_id "STRG.22974"; gene_name "Srrd"; xloc "XLOC_009426"; ref_gene_id "ENSMUSG00000029346"; cmp_ref "ENSMUST00000125628"; class_code "="; tss_id "TSS22932"; +5 StringTie exon 112337909 112338472 . - . transcript_id "STRG.22974.5"; gene_id "STRG.22974"; exon_number "1"; +5 StringTie exon 112339719 112339817 . - . transcript_id "STRG.22974.5"; gene_id "STRG.22974"; exon_number "2"; +5 StringTie exon 112339897 112339932 . - . transcript_id "STRG.22974.5"; gene_id "STRG.22974"; exon_number "3"; +5 StringTie transcript 112337972 112343018 . - . transcript_id "STRG.22974.3"; gene_id "STRG.22974"; gene_name "Srrd"; xloc "XLOC_009426"; ref_gene_id "ENSMUSG00000029346"; cmp_ref "ENSMUST00000156083"; class_code "="; tss_id "TSS22933"; +5 StringTie exon 112337972 112338047 . - . transcript_id "STRG.22974.3"; gene_id "STRG.22974"; exon_number "1"; +5 StringTie exon 112338318 112338567 . - . transcript_id "STRG.22974.3"; gene_id "STRG.22974"; exon_number "2"; +5 StringTie exon 112339719 112339817 . - . transcript_id "STRG.22974.3"; gene_id "STRG.22974"; exon_number "3"; +5 StringTie exon 112339897 112340123 . - . transcript_id "STRG.22974.3"; gene_id "STRG.22974"; exon_number "4"; +5 StringTie exon 112341096 112341136 . - . transcript_id "STRG.22974.3"; gene_id "STRG.22974"; exon_number "5"; +5 StringTie exon 112342875 112343018 . - . transcript_id "STRG.22974.3"; gene_id "STRG.22974"; exon_number "6"; +5 StringTie transcript 112339719 112340219 . - . transcript_id "STRG.22974.6"; gene_id "STRG.22974"; gene_name "Srrd"; xloc "XLOC_009426"; ref_gene_id "ENSMUSG00000029346"; cmp_ref "ENSMUST00000147940"; class_code "="; tss_id "TSS22934"; +5 StringTie exon 112339719 112339817 . - . transcript_id "STRG.22974.6"; gene_id "STRG.22974"; exon_number "1"; +5 StringTie exon 112339897 112340219 . - . transcript_id "STRG.22974.6"; gene_id "STRG.22974"; exon_number "2"; +5 StringTie transcript 112419352 112425650 . - . transcript_id "STRG.22982.1"; gene_id "STRG.22982"; gene_name "Sez6l"; xloc "XLOC_009427"; cmp_ref "ENSMUST00000075387"; class_code "c"; tss_id "TSS22935"; +5 StringTie exon 112419352 112422038 . - . transcript_id "STRG.22982.1"; gene_id "STRG.22982"; exon_number "1"; +5 StringTie exon 112424623 112424725 . - . transcript_id "STRG.22982.1"; gene_id "STRG.22982"; exon_number "2"; +5 StringTie exon 112425614 112425650 . - . transcript_id "STRG.22982.1"; gene_id "STRG.22982"; exon_number "3"; +5 StringTie transcript 112688878 112765931 . - . transcript_id "STRG.22984.3"; gene_id "STRG.22984"; gene_name "Myo18b"; xloc "XLOC_009428"; ref_gene_id "ENSMUSG00000072720"; cmp_ref "ENSMUST00000182189"; class_code "="; tss_id "TSS22936"; +5 StringTie exon 112688878 112689097 . - . transcript_id "STRG.22984.3"; gene_id "STRG.22984"; exon_number "1"; +5 StringTie exon 112692096 112693335 . - . transcript_id "STRG.22984.3"; gene_id "STRG.22984"; exon_number "2"; +5 StringTie exon 112715381 112715518 . - . transcript_id "STRG.22984.3"; gene_id "STRG.22984"; exon_number "3"; +5 StringTie exon 112716987 112717031 . - . transcript_id "STRG.22984.3"; gene_id "STRG.22984"; exon_number "4"; +5 StringTie exon 112723807 112723937 . - . transcript_id "STRG.22984.3"; gene_id "STRG.22984"; exon_number "5"; +5 StringTie exon 112757455 112757640 . - . transcript_id "STRG.22984.3"; gene_id "STRG.22984"; exon_number "6"; +5 StringTie exon 112760316 112760453 . - . transcript_id "STRG.22984.3"; gene_id "STRG.22984"; exon_number "7"; +5 StringTie exon 112761324 112761407 . - . transcript_id "STRG.22984.3"; gene_id "STRG.22984"; exon_number "8"; +5 StringTie exon 112762657 112762773 . - . transcript_id "STRG.22984.3"; gene_id "STRG.22984"; exon_number "9"; +5 StringTie exon 112764448 112764561 . - . transcript_id "STRG.22984.3"; gene_id "STRG.22984"; exon_number "10"; +5 StringTie exon 112765835 112765931 . - . transcript_id "STRG.22984.3"; gene_id "STRG.22984"; exon_number "11"; +5 StringTie transcript 112688918 112871586 . - . transcript_id "STRG.22984.1"; gene_id "STRG.22984"; gene_name "Myo18b"; xloc "XLOC_009428"; cmp_ref "ENSMUST00000086617"; class_code "c"; tss_id "TSS22937"; +5 StringTie exon 112688918 112689097 . - . transcript_id "STRG.22984.1"; gene_id "STRG.22984"; exon_number "1"; +5 StringTie exon 112692096 112693335 . - . transcript_id "STRG.22984.1"; gene_id "STRG.22984"; exon_number "2"; +5 StringTie exon 112715381 112715518 . - . transcript_id "STRG.22984.1"; gene_id "STRG.22984"; exon_number "3"; +5 StringTie exon 112716987 112717031 . - . transcript_id "STRG.22984.1"; gene_id "STRG.22984"; exon_number "4"; +5 StringTie exon 112723807 112723937 . - . transcript_id "STRG.22984.1"; gene_id "STRG.22984"; exon_number "5"; +5 StringTie exon 112757455 112757640 . - . transcript_id "STRG.22984.1"; gene_id "STRG.22984"; exon_number "6"; +5 StringTie exon 112760316 112760453 . - . transcript_id "STRG.22984.1"; gene_id "STRG.22984"; exon_number "7"; +5 StringTie exon 112761324 112761407 . - . transcript_id "STRG.22984.1"; gene_id "STRG.22984"; exon_number "8"; +5 StringTie exon 112762657 112762773 . - . transcript_id "STRG.22984.1"; gene_id "STRG.22984"; exon_number "9"; +5 StringTie exon 112764448 112764561 . - . transcript_id "STRG.22984.1"; gene_id "STRG.22984"; exon_number "10"; +5 StringTie exon 112775253 112775405 . - . transcript_id "STRG.22984.1"; gene_id "STRG.22984"; exon_number "11"; +5 StringTie exon 112782585 112782689 . - . transcript_id "STRG.22984.1"; gene_id "STRG.22984"; exon_number "12"; +5 StringTie exon 112785557 112785667 . - . transcript_id "STRG.22984.1"; gene_id "STRG.22984"; exon_number "13"; +5 StringTie exon 112789990 112790190 . - . transcript_id "STRG.22984.1"; gene_id "STRG.22984"; exon_number "14"; +5 StringTie exon 112791077 112791200 . - . transcript_id "STRG.22984.1"; gene_id "STRG.22984"; exon_number "15"; +5 StringTie exon 112795395 112795549 . - . transcript_id "STRG.22984.1"; gene_id "STRG.22984"; exon_number "16"; +5 StringTie exon 112798817 112798941 . - . transcript_id "STRG.22984.1"; gene_id "STRG.22984"; exon_number "17"; +5 StringTie exon 112802366 112802474 . - . transcript_id "STRG.22984.1"; gene_id "STRG.22984"; exon_number "18"; +5 StringTie exon 112803189 112803308 . - . transcript_id "STRG.22984.1"; gene_id "STRG.22984"; exon_number "19"; +5 StringTie exon 112809662 112809751 . - . transcript_id "STRG.22984.1"; gene_id "STRG.22984"; exon_number "20"; +5 StringTie exon 112811586 112811729 . - . transcript_id "STRG.22984.1"; gene_id "STRG.22984"; exon_number "21"; +5 StringTie exon 112811986 112812114 . - . transcript_id "STRG.22984.1"; gene_id "STRG.22984"; exon_number "22"; +5 StringTie exon 112817630 112817695 . - . transcript_id "STRG.22984.1"; gene_id "STRG.22984"; exon_number "23"; +5 StringTie exon 112827977 112828086 . - . transcript_id "STRG.22984.1"; gene_id "STRG.22984"; exon_number "24"; +5 StringTie exon 112830160 112830379 . - . transcript_id "STRG.22984.1"; gene_id "STRG.22984"; exon_number "25"; +5 StringTie exon 112831071 112831254 . - . transcript_id "STRG.22984.1"; gene_id "STRG.22984"; exon_number "26"; +5 StringTie exon 112834375 112834534 . - . transcript_id "STRG.22984.1"; gene_id "STRG.22984"; exon_number "27"; +5 StringTie exon 112837751 112837901 . - . transcript_id "STRG.22984.1"; gene_id "STRG.22984"; exon_number "28"; +5 StringTie exon 112839617 112839697 . - . transcript_id "STRG.22984.1"; gene_id "STRG.22984"; exon_number "29"; +5 StringTie exon 112840620 112840812 . - . transcript_id "STRG.22984.1"; gene_id "STRG.22984"; exon_number "30"; +5 StringTie exon 112843204 112843294 . - . transcript_id "STRG.22984.1"; gene_id "STRG.22984"; exon_number "31"; +5 StringTie exon 112846271 112846444 . - . transcript_id "STRG.22984.1"; gene_id "STRG.22984"; exon_number "32"; +5 StringTie exon 112858402 112858546 . - . transcript_id "STRG.22984.1"; gene_id "STRG.22984"; exon_number "33"; +5 StringTie exon 112865240 112865303 . - . transcript_id "STRG.22984.1"; gene_id "STRG.22984"; exon_number "34"; +5 StringTie exon 112865657 112865757 . - . transcript_id "STRG.22984.1"; gene_id "STRG.22984"; exon_number "35"; +5 StringTie exon 112866344 112866486 . - . transcript_id "STRG.22984.1"; gene_id "STRG.22984"; exon_number "36"; +5 StringTie exon 112868194 112868392 . - . transcript_id "STRG.22984.1"; gene_id "STRG.22984"; exon_number "37"; +5 StringTie exon 112871421 112871586 . - . transcript_id "STRG.22984.1"; gene_id "STRG.22984"; exon_number "38"; +5 StringTie transcript 112772886 112871586 . - . transcript_id "STRG.22984.2"; gene_id "STRG.22984"; gene_name "Myo18b"; xloc "XLOC_009428"; ref_gene_id "ENSMUSG00000072720"; cmp_ref "ENSMUST00000183029"; class_code "="; tss_id "TSS22937"; +5 StringTie exon 112772886 112774526 . - . transcript_id "STRG.22984.2"; gene_id "STRG.22984"; exon_number "1"; +5 StringTie exon 112775018 112775405 . - . transcript_id "STRG.22984.2"; gene_id "STRG.22984"; exon_number "2"; +5 StringTie exon 112782585 112782689 . - . transcript_id "STRG.22984.2"; gene_id "STRG.22984"; exon_number "3"; +5 StringTie exon 112785557 112785667 . - . transcript_id "STRG.22984.2"; gene_id "STRG.22984"; exon_number "4"; +5 StringTie exon 112789990 112790190 . - . transcript_id "STRG.22984.2"; gene_id "STRG.22984"; exon_number "5"; +5 StringTie exon 112791077 112791200 . - . transcript_id "STRG.22984.2"; gene_id "STRG.22984"; exon_number "6"; +5 StringTie exon 112795395 112795549 . - . transcript_id "STRG.22984.2"; gene_id "STRG.22984"; exon_number "7"; +5 StringTie exon 112798817 112798941 . - . transcript_id "STRG.22984.2"; gene_id "STRG.22984"; exon_number "8"; +5 StringTie exon 112802366 112802474 . - . transcript_id "STRG.22984.2"; gene_id "STRG.22984"; exon_number "9"; +5 StringTie exon 112803189 112803308 . - . transcript_id "STRG.22984.2"; gene_id "STRG.22984"; exon_number "10"; +5 StringTie exon 112809662 112809751 . - . transcript_id "STRG.22984.2"; gene_id "STRG.22984"; exon_number "11"; +5 StringTie exon 112811586 112811729 . - . transcript_id "STRG.22984.2"; gene_id "STRG.22984"; exon_number "12"; +5 StringTie exon 112811986 112812114 . - . transcript_id "STRG.22984.2"; gene_id "STRG.22984"; exon_number "13"; +5 StringTie exon 112817630 112817695 . - . transcript_id "STRG.22984.2"; gene_id "STRG.22984"; exon_number "14"; +5 StringTie exon 112827977 112828086 . - . transcript_id "STRG.22984.2"; gene_id "STRG.22984"; exon_number "15"; +5 StringTie exon 112830160 112830379 . - . transcript_id "STRG.22984.2"; gene_id "STRG.22984"; exon_number "16"; +5 StringTie exon 112831071 112831254 . - . transcript_id "STRG.22984.2"; gene_id "STRG.22984"; exon_number "17"; +5 StringTie exon 112834375 112834534 . - . transcript_id "STRG.22984.2"; gene_id "STRG.22984"; exon_number "18"; +5 StringTie exon 112837751 112837901 . - . transcript_id "STRG.22984.2"; gene_id "STRG.22984"; exon_number "19"; +5 StringTie exon 112839617 112839697 . - . transcript_id "STRG.22984.2"; gene_id "STRG.22984"; exon_number "20"; +5 StringTie exon 112840620 112840812 . - . transcript_id "STRG.22984.2"; gene_id "STRG.22984"; exon_number "21"; +5 StringTie exon 112843204 112843294 . - . transcript_id "STRG.22984.2"; gene_id "STRG.22984"; exon_number "22"; +5 StringTie exon 112846271 112846444 . - . transcript_id "STRG.22984.2"; gene_id "STRG.22984"; exon_number "23"; +5 StringTie exon 112858402 112858546 . - . transcript_id "STRG.22984.2"; gene_id "STRG.22984"; exon_number "24"; +5 StringTie exon 112865240 112865303 . - . transcript_id "STRG.22984.2"; gene_id "STRG.22984"; exon_number "25"; +5 StringTie exon 112865657 112865757 . - . transcript_id "STRG.22984.2"; gene_id "STRG.22984"; exon_number "26"; +5 StringTie exon 112866344 112866486 . - . transcript_id "STRG.22984.2"; gene_id "STRG.22984"; exon_number "27"; +5 StringTie exon 112868194 112868392 . - . transcript_id "STRG.22984.2"; gene_id "STRG.22984"; exon_number "28"; +5 StringTie exon 112871421 112871586 . - . transcript_id "STRG.22984.2"; gene_id "STRG.22984"; exon_number "29"; +5 StringTie transcript 112871742 112874253 . - . transcript_id "STRG.22984.5"; gene_id "STRG.22984"; gene_name "Myo18b"; xloc "XLOC_009428"; cmp_ref "ENSMUST00000086617"; class_code "j"; tss_id "TSS22938"; +5 StringTie exon 112871742 112872496 . - . transcript_id "STRG.22984.5"; gene_id "STRG.22984"; exon_number "1"; +5 StringTie exon 112873495 112873561 . - . transcript_id "STRG.22984.5"; gene_id "STRG.22984"; exon_number "2"; +5 StringTie exon 112873893 112874253 . - . transcript_id "STRG.22984.5"; gene_id "STRG.22984"; exon_number "3"; +5 StringTie transcript 112875223 112896379 . - . transcript_id "STRG.22984.4"; gene_id "STRG.22984"; gene_name "Myo18b"; xloc "XLOC_009428"; cmp_ref "ENSMUST00000086617"; class_code "j"; tss_id "TSS22939"; +5 StringTie exon 112875223 112875326 . - . transcript_id "STRG.22984.4"; gene_id "STRG.22984"; exon_number "1"; +5 StringTie exon 112877985 112878143 . - . transcript_id "STRG.22984.4"; gene_id "STRG.22984"; exon_number "2"; +5 StringTie exon 112896256 112896379 . - . transcript_id "STRG.22984.4"; gene_id "STRG.22984"; exon_number "3"; +5 StringTie transcript 112879420 112896379 . - . transcript_id "STRG.22984.6"; gene_id "STRG.22984"; gene_name "Myo18b"; xloc "XLOC_009428"; cmp_ref "ENSMUST00000086617"; class_code "c"; tss_id "TSS22939"; +5 StringTie exon 112879420 112879578 . - . transcript_id "STRG.22984.6"; gene_id "STRG.22984"; exon_number "1"; +5 StringTie exon 112896256 112896379 . - . transcript_id "STRG.22984.6"; gene_id "STRG.22984"; exon_number "2"; +5 StringTie transcript 112910482 113015514 . - . transcript_id "STRG.22985.1"; gene_id "STRG.22985"; gene_name "Adrbk2"; xloc "XLOC_009429"; ref_gene_id "ENSMUSG00000042249"; cmp_ref "ENSMUST00000065167"; class_code "="; tss_id "TSS22940"; p_id "P12168"; +5 StringTie exon 112910482 112915074 . - . transcript_id "STRG.22985.1"; gene_id "STRG.22985"; exon_number "1"; +5 StringTie exon 112916050 112916163 . - . transcript_id "STRG.22985.1"; gene_id "STRG.22985"; exon_number "2"; +5 StringTie exon 112918826 112918962 . - . transcript_id "STRG.22985.1"; gene_id "STRG.22985"; exon_number "3"; +5 StringTie exon 112920008 112920170 . - . transcript_id "STRG.22985.1"; gene_id "STRG.22985"; exon_number "4"; +5 StringTie exon 112923949 112924044 . - . transcript_id "STRG.22985.1"; gene_id "STRG.22985"; exon_number "5"; +5 StringTie exon 112925396 112925462 . - . transcript_id "STRG.22985.1"; gene_id "STRG.22985"; exon_number "6"; +5 StringTie exon 112928656 112928756 . - . transcript_id "STRG.22985.1"; gene_id "STRG.22985"; exon_number "7"; +5 StringTie exon 112929673 112929739 . - . transcript_id "STRG.22985.1"; gene_id "STRG.22985"; exon_number "8"; +5 StringTie exon 112937709 112937816 . - . transcript_id "STRG.22985.1"; gene_id "STRG.22985"; exon_number "9"; +5 StringTie exon 112941633 112941727 . - . transcript_id "STRG.22985.1"; gene_id "STRG.22985"; exon_number "10"; +5 StringTie exon 112944918 112945048 . - . transcript_id "STRG.22985.1"; gene_id "STRG.22985"; exon_number "11"; +5 StringTie exon 112946587 112946665 . - . transcript_id "STRG.22985.1"; gene_id "STRG.22985"; exon_number "12"; +5 StringTie exon 112953826 112953925 . - . transcript_id "STRG.22985.1"; gene_id "STRG.22985"; exon_number "13"; +5 StringTie exon 112955164 112955255 . - . transcript_id "STRG.22985.1"; gene_id "STRG.22985"; exon_number "14"; +5 StringTie exon 112957315 112957366 . - . transcript_id "STRG.22985.1"; gene_id "STRG.22985"; exon_number "15"; +5 StringTie exon 112961587 112961648 . - . transcript_id "STRG.22985.1"; gene_id "STRG.22985"; exon_number "16"; +5 StringTie exon 112966912 112966986 . - . transcript_id "STRG.22985.1"; gene_id "STRG.22985"; exon_number "17"; +5 StringTie exon 112969168 112969269 . - . transcript_id "STRG.22985.1"; gene_id "STRG.22985"; exon_number "18"; +5 StringTie exon 112973507 112973580 . - . transcript_id "STRG.22985.1"; gene_id "STRG.22985"; exon_number "19"; +5 StringTie exon 112985765 112985841 . - . transcript_id "STRG.22985.1"; gene_id "STRG.22985"; exon_number "20"; +5 StringTie exon 113015367 113015514 . - . transcript_id "STRG.22985.1"; gene_id "STRG.22985"; exon_number "21"; +5 StringTie transcript 112912599 113015514 . - . transcript_id "STRG.22985.2"; gene_id "STRG.22985"; gene_name "Adrbk2"; xloc "XLOC_009429"; ref_gene_id "ENSMUSG00000042249"; cmp_ref "ENSMUST00000200332"; class_code "="; tss_id "TSS22940"; p_id "P12169"; +5 StringTie exon 112912599 112915074 . - . transcript_id "STRG.22985.2"; gene_id "STRG.22985"; exon_number "1"; +5 StringTie exon 112916050 112916163 . - . transcript_id "STRG.22985.2"; gene_id "STRG.22985"; exon_number "2"; +5 StringTie exon 112918826 112918962 . - . transcript_id "STRG.22985.2"; gene_id "STRG.22985"; exon_number "3"; +5 StringTie exon 112920008 112920170 . - . transcript_id "STRG.22985.2"; gene_id "STRG.22985"; exon_number "4"; +5 StringTie exon 112923949 112924044 . - . transcript_id "STRG.22985.2"; gene_id "STRG.22985"; exon_number "5"; +5 StringTie exon 112925396 112925462 . - . transcript_id "STRG.22985.2"; gene_id "STRG.22985"; exon_number "6"; +5 StringTie exon 112928656 112928756 . - . transcript_id "STRG.22985.2"; gene_id "STRG.22985"; exon_number "7"; +5 StringTie exon 112929673 112929739 . - . transcript_id "STRG.22985.2"; gene_id "STRG.22985"; exon_number "8"; +5 StringTie exon 112937709 112937816 . - . transcript_id "STRG.22985.2"; gene_id "STRG.22985"; exon_number "9"; +5 StringTie exon 112941633 112941727 . - . transcript_id "STRG.22985.2"; gene_id "STRG.22985"; exon_number "10"; +5 StringTie exon 112944918 112945048 . - . transcript_id "STRG.22985.2"; gene_id "STRG.22985"; exon_number "11"; +5 StringTie exon 112946587 112946665 . - . transcript_id "STRG.22985.2"; gene_id "STRG.22985"; exon_number "12"; +5 StringTie exon 112953826 112953925 . - . transcript_id "STRG.22985.2"; gene_id "STRG.22985"; exon_number "13"; +5 StringTie exon 112955164 112955255 . - . transcript_id "STRG.22985.2"; gene_id "STRG.22985"; exon_number "14"; +5 StringTie exon 112957315 112957366 . - . transcript_id "STRG.22985.2"; gene_id "STRG.22985"; exon_number "15"; +5 StringTie exon 112961587 112961648 . - . transcript_id "STRG.22985.2"; gene_id "STRG.22985"; exon_number "16"; +5 StringTie exon 112966912 112966986 . - . transcript_id "STRG.22985.2"; gene_id "STRG.22985"; exon_number "17"; +5 StringTie exon 112969168 112969308 . - . transcript_id "STRG.22985.2"; gene_id "STRG.22985"; exon_number "18"; +5 StringTie exon 112973507 112973580 . - . transcript_id "STRG.22985.2"; gene_id "STRG.22985"; exon_number "19"; +5 StringTie exon 112985765 112985841 . - . transcript_id "STRG.22985.2"; gene_id "STRG.22985"; exon_number "20"; +5 StringTie exon 113015367 113015514 . - . transcript_id "STRG.22985.2"; gene_id "STRG.22985"; exon_number "21"; +5 StringTie transcript 112916110 112924375 . - . transcript_id "STRG.22985.4"; gene_id "STRG.22985"; gene_name "Adrbk2"; xloc "XLOC_009429"; ref_gene_id "ENSMUSG00000042249"; cmp_ref "ENSMUST00000199337"; class_code "="; tss_id "TSS22941"; +5 StringTie exon 112916110 112916163 . - . transcript_id "STRG.22985.4"; gene_id "STRG.22985"; exon_number "1"; +5 StringTie exon 112918826 112918962 . - . transcript_id "STRG.22985.4"; gene_id "STRG.22985"; exon_number "2"; +5 StringTie exon 112920008 112920170 . - . transcript_id "STRG.22985.4"; gene_id "STRG.22985"; exon_number "3"; +5 StringTie exon 112923949 112924375 . - . transcript_id "STRG.22985.4"; gene_id "STRG.22985"; exon_number "4"; +5 StringTie transcript 112920062 112925798 . - . transcript_id "STRG.22985.5"; gene_id "STRG.22985"; gene_name "Adrbk2"; xloc "XLOC_009429"; ref_gene_id "ENSMUSG00000042249"; cmp_ref "ENSMUST00000195928"; class_code "="; tss_id "TSS22942"; +5 StringTie exon 112920062 112920170 . - . transcript_id "STRG.22985.5"; gene_id "STRG.22985"; exon_number "1"; +5 StringTie exon 112923949 112924044 . - . transcript_id "STRG.22985.5"; gene_id "STRG.22985"; exon_number "2"; +5 StringTie exon 112925245 112925798 . - . transcript_id "STRG.22985.5"; gene_id "STRG.22985"; exon_number "3"; +5 StringTie transcript 112960544 113015503 . - . transcript_id "STRG.22985.3"; gene_id "STRG.22985"; gene_name "Adrbk2"; xloc "XLOC_009429"; ref_gene_id "ENSMUSG00000042249"; cmp_ref "ENSMUST00000197776"; class_code "="; tss_id "TSS22940"; p_id "P12167"; +5 StringTie exon 112960544 112961648 . - . transcript_id "STRG.22985.3"; gene_id "STRG.22985"; exon_number "1"; +5 StringTie exon 112966912 112966986 . - . transcript_id "STRG.22985.3"; gene_id "STRG.22985"; exon_number "2"; +5 StringTie exon 112969168 112969269 . - . transcript_id "STRG.22985.3"; gene_id "STRG.22985"; exon_number "3"; +5 StringTie exon 112973507 112973580 . - . transcript_id "STRG.22985.3"; gene_id "STRG.22985"; exon_number "4"; +5 StringTie exon 112985765 112985841 . - . transcript_id "STRG.22985.3"; gene_id "STRG.22985"; exon_number "5"; +5 StringTie exon 113015367 113015503 . - . transcript_id "STRG.22985.3"; gene_id "STRG.22985"; exon_number "6"; +5 StringTie transcript 113086323 113163351 . - . transcript_id "STRG.22991.1"; gene_id "STRG.22991"; gene_name "2900026A02Rik"; xloc "XLOC_009430"; ref_gene_id "ENSMUSG00000051339"; cmp_ref "ENSMUST00000050125"; class_code "="; tss_id "TSS22943"; p_id "P12170"; +5 StringTie exon 113086323 113091024 . - . transcript_id "STRG.22991.1"; gene_id "STRG.22991"; exon_number "1"; +5 StringTie exon 113092415 113092497 . - . transcript_id "STRG.22991.1"; gene_id "STRG.22991"; exon_number "2"; +5 StringTie exon 113093102 113093244 . - . transcript_id "STRG.22991.1"; gene_id "STRG.22991"; exon_number "3"; +5 StringTie exon 113093966 113094084 . - . transcript_id "STRG.22991.1"; gene_id "STRG.22991"; exon_number "4"; +5 StringTie exon 113095590 113095764 . - . transcript_id "STRG.22991.1"; gene_id "STRG.22991"; exon_number "5"; +5 StringTie exon 113097598 113097838 . - . transcript_id "STRG.22991.1"; gene_id "STRG.22991"; exon_number "6"; +5 StringTie exon 113101459 113101577 . - . transcript_id "STRG.22991.1"; gene_id "STRG.22991"; exon_number "7"; +5 StringTie exon 113163058 113163351 . - . transcript_id "STRG.22991.1"; gene_id "STRG.22991"; exon_number "8"; +5 StringTie transcript 113184128 113192079 . - . transcript_id "STRG.22997.1"; gene_id "STRG.22997"; xloc "XLOC_009431"; class_code "u"; tss_id "TSS22944"; +5 StringTie exon 113184128 113184717 . - . transcript_id "STRG.22997.1"; gene_id "STRG.22997"; exon_number "1"; +5 StringTie exon 113188286 113188373 . - . transcript_id "STRG.22997.1"; gene_id "STRG.22997"; exon_number "2"; +5 StringTie exon 113190604 113192079 . - . transcript_id "STRG.22997.1"; gene_id "STRG.22997"; exon_number "3"; +12 StringTie transcript 69229665 69231901 . + . transcript_id "STRG.52020.2"; gene_id "STRG.52020"; xloc "XLOC_002595"; class_code "u"; tss_id "TSS6428"; +12 StringTie exon 69229665 69229726 . + . transcript_id "STRG.52020.2"; gene_id "STRG.52020"; exon_number "1"; +12 StringTie exon 69231699 69231901 . + . transcript_id "STRG.52020.2"; gene_id "STRG.52020"; exon_number "2"; +12 StringTie transcript 69199879 69228169 . - . transcript_id "STRG.52021.2"; gene_id "STRG.52021"; gene_name "Pole2"; xloc "XLOC_002837"; cmp_ref "ENSMUST00000021359"; class_code "j"; tss_id "TSS6896"; +12 StringTie exon 69199879 69201882 . - . transcript_id "STRG.52021.2"; gene_id "STRG.52021"; exon_number "1"; +12 StringTie exon 69202907 69202974 . - . transcript_id "STRG.52021.2"; gene_id "STRG.52021"; exon_number "2"; +12 StringTie exon 69204091 69204267 . - . transcript_id "STRG.52021.2"; gene_id "STRG.52021"; exon_number "3"; +12 StringTie exon 69206410 69206518 . - . transcript_id "STRG.52021.2"; gene_id "STRG.52021"; exon_number "4"; +12 StringTie exon 69207859 69207936 . - . transcript_id "STRG.52021.2"; gene_id "STRG.52021"; exon_number "5"; +12 StringTie exon 69208021 69208080 . - . transcript_id "STRG.52021.2"; gene_id "STRG.52021"; exon_number "6"; +12 StringTie exon 69208917 69208971 . - . transcript_id "STRG.52021.2"; gene_id "STRG.52021"; exon_number "7"; +12 StringTie exon 69209312 69209994 . - . transcript_id "STRG.52021.2"; gene_id "STRG.52021"; exon_number "8"; +12 StringTie exon 69211373 69211445 . - . transcript_id "STRG.52021.2"; gene_id "STRG.52021"; exon_number "9"; +12 StringTie exon 69212223 69212271 . - . transcript_id "STRG.52021.2"; gene_id "STRG.52021"; exon_number "10"; +12 StringTie exon 69212987 69213043 . - . transcript_id "STRG.52021.2"; gene_id "STRG.52021"; exon_number "11"; +12 StringTie exon 69213829 69213912 . - . transcript_id "STRG.52021.2"; gene_id "STRG.52021"; exon_number "12"; +12 StringTie exon 69215311 69215385 . - . transcript_id "STRG.52021.2"; gene_id "STRG.52021"; exon_number "13"; +12 StringTie exon 69221977 69222070 . - . transcript_id "STRG.52021.2"; gene_id "STRG.52021"; exon_number "14"; +12 StringTie exon 69222399 69222476 . - . transcript_id "STRG.52021.2"; gene_id "STRG.52021"; exon_number "15"; +12 StringTie exon 69223104 69223179 . - . transcript_id "STRG.52021.2"; gene_id "STRG.52021"; exon_number "16"; +12 StringTie exon 69226338 69226438 . - . transcript_id "STRG.52021.2"; gene_id "STRG.52021"; exon_number "17"; +12 StringTie exon 69228097 69228169 . - . transcript_id "STRG.52021.2"; gene_id "STRG.52021"; exon_number "18"; +12 StringTie transcript 69201779 69228190 . - . transcript_id "STRG.52021.1"; gene_id "STRG.52021"; gene_name "Pole2"; xloc "XLOC_002837"; ref_gene_id "ENSMUSG00000020974"; cmp_ref "ENSMUST00000021359"; class_code "="; tss_id "TSS6896"; p_id "P3723"; +12 StringTie exon 69201779 69201882 . - . transcript_id "STRG.52021.1"; gene_id "STRG.52021"; exon_number "1"; +12 StringTie exon 69202907 69202974 . - . transcript_id "STRG.52021.1"; gene_id "STRG.52021"; exon_number "2"; +12 StringTie exon 69204091 69204267 . - . transcript_id "STRG.52021.1"; gene_id "STRG.52021"; exon_number "3"; +12 StringTie exon 69206410 69206518 . - . transcript_id "STRG.52021.1"; gene_id "STRG.52021"; exon_number "4"; +12 StringTie exon 69207859 69207936 . - . transcript_id "STRG.52021.1"; gene_id "STRG.52021"; exon_number "5"; +12 StringTie exon 69208021 69208080 . - . transcript_id "STRG.52021.1"; gene_id "STRG.52021"; exon_number "6"; +12 StringTie exon 69208917 69208971 . - . transcript_id "STRG.52021.1"; gene_id "STRG.52021"; exon_number "7"; +12 StringTie exon 69209312 69209401 . - . transcript_id "STRG.52021.1"; gene_id "STRG.52021"; exon_number "8"; +12 StringTie exon 69209822 69209994 . - . transcript_id "STRG.52021.1"; gene_id "STRG.52021"; exon_number "9"; +12 StringTie exon 69211373 69211445 . - . transcript_id "STRG.52021.1"; gene_id "STRG.52021"; exon_number "10"; +12 StringTie exon 69212223 69212271 . - . transcript_id "STRG.52021.1"; gene_id "STRG.52021"; exon_number "11"; +12 StringTie exon 69212987 69213043 . - . transcript_id "STRG.52021.1"; gene_id "STRG.52021"; exon_number "12"; +12 StringTie exon 69213829 69213912 . - . transcript_id "STRG.52021.1"; gene_id "STRG.52021"; exon_number "13"; +12 StringTie exon 69215311 69215385 . - . transcript_id "STRG.52021.1"; gene_id "STRG.52021"; exon_number "14"; +12 StringTie exon 69221977 69222070 . - . transcript_id "STRG.52021.1"; gene_id "STRG.52021"; exon_number "15"; +12 StringTie exon 69222399 69222476 . - . transcript_id "STRG.52021.1"; gene_id "STRG.52021"; exon_number "16"; +12 StringTie exon 69223104 69223179 . - . transcript_id "STRG.52021.1"; gene_id "STRG.52021"; exon_number "17"; +12 StringTie exon 69226338 69226438 . - . transcript_id "STRG.52021.1"; gene_id "STRG.52021"; exon_number "18"; +12 StringTie exon 69228097 69228190 . - . transcript_id "STRG.52021.1"; gene_id "STRG.52021"; exon_number "19";
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/gffcompare_output.bed Thu Jan 11 11:16:51 2018 -0500 @@ -0,0 +1,124 @@ +1 43776566 43778980 STRG.1163.2_i 0 - 43776566 43778980 100,100,100 3 1094,244,100 0,1948,2314 +1 43776566 43778980 STRG.1163.1_i 0 - 43776566 43778980 100,100,100 3 1155,122,100 0,1887,2314 +1 45331686 45332998 STRG.1209.1_c 0 + 45331686 45332998 100,100,100 4 90,54,108,34 0,286,448,1278 +1 6453836 6460700 STRG.88.1_u 0 + 6453836 6460700 100,100,100 2 50,156 0,6708 +1 86703818 87050095 STRG.2299.1 0 + 86703818 87050095 100,100,100 22 53,148,158,54,102,42,229,101,248,174,80,113,108,234,80,184,87,148,131,105,102,473 0,40862,41522,50408,56469,87597,117403,150541,153308,174584,226935,255924,269581,286273,317219,340198,341011,343218,343629,343869,345014,345804 +1 86703827 86882439 STRG.2299.5 0 + 86703827 86882439 100,100,100 11 44,148,158,54,102,42,78,229,101,248,4037 0,40853,41513,50399,56460,87588,108684,117394,150532,153299,174575 +1 86703827 87049195 STRG.2299.3 0 + 86703827 87049195 100,100,100 21 44,148,158,54,102,78,229,101,248,174,80,113,108,234,80,184,87,148,131,105,363 0,40853,41513,50399,56460,108684,117394,150532,153299,174575,226926,255915,269572,286264,317210,340189,341002,343209,343620,343860,345005 +1 86703842 87050092 STRG.2299.4_j 0 + 86703842 87050092 100,100,100 21 29,148,158,54,102,78,229,101,248,174,80,113,234,80,184,87,148,131,105,102,470 0,40838,41498,50384,56445,108669,117379,150517,153284,174560,226911,255900,286249,317195,340174,340987,343194,343605,343845,344990,345780 +1 86703842 87050092 STRG.2299.2 0 + 86703842 87050092 100,100,100 21 29,148,158,54,102,229,101,248,174,80,113,108,234,80,184,87,148,131,105,102,470 0,40838,41498,50384,56445,117379,150517,153284,174560,226911,255900,269557,286249,317195,340174,340987,343194,343605,343845,344990,345780 +1 86754158 86767638 STRG.2299.6_j 0 + 86754158 86767638 100,100,100 3 122,102,509 0,6129,12971 +1 9941958 9944118 STRG.229.1 0 - 9941958 9944118 100,100,100 4 197,69,108,99 0,364,651,2061 +1 9942022 9943223 STRG.229.5 0 - 9942022 9943223 100,100,100 3 133,69,614 0,300,587 +1 9942024 9942897 STRG.229.7 0 - 9942024 9942897 100,100,100 2 367,288 0,585 +1 9942024 9944103 STRG.229.6_j 0 - 9942024 9944103 100,100,100 3 131,395,84 0,298,1995 +1 9942024 9944103 STRG.229.4 0 - 9942024 9944103 100,100,100 3 367,108,84 0,585,1995 +1 9942024 9944103 STRG.229.3_j 0 - 9942024 9944103 100,100,100 4 131,62,108,84 0,298,585,1995 +1 9942024 9944117 STRG.229.2 0 - 9942024 9944117 100,100,100 4 125,69,108,98 0,298,585,1995 +1 86908792 86909683 STRG.2297.1_i 0 - 86908792 86909683 100,100,100 2 319,285 0,606 +1 193145390 193173087 STRG.5202.1_j 0 + 193145390 193173087 100,100,100 8 42,177,205,129,159,393,119,3806 0,11825,16222,17211,20375,22048,23126,23891 +1 193156668 193164181 STRG.5202.2 0 + 193156668 193164181 100,100,100 3 724,205,1580 0,4944,5933 +1 193167974 193173087 STRG.5202.3_j 0 + 193167974 193173087 100,100,100 3 157,119,3806 0,542,1307 +1 193168502 193169489 STRG.5202.4 0 + 193168502 193169489 100,100,100 2 133,208 0,779 +2 119749138 119749844 STRG.8811.1_j 0 + 119749138 119749844 100,100,100 3 148,217,172 0,223,534 +2 119972463 120018974 STRG.8821.1_j 0 + 119972463 120018974 100,100,100 19 17,223,92,63,58,171,138,183,161,190,147,176,92,126,71,122,76,112,53 0,482,26018,38279,38538,39469,40129,40448,41155,42159,42879,43229,44316,44676,45117,45292,45835,46024,46458 +2 120011686 120013094 STRG.8821.3 0 + 120011686 120013094 100,100,100 3 417,138,183 0,906,1225 +2 120013042 120015605 STRG.8821.2 0 + 120013042 120015605 100,100,100 4 52,161,190,263 0,576,1580,2300 +2 121008402 121016904 STRG.8871.1 0 + 121008402 121016904 100,100,100 11 207,60,80,82,97,74,77,278,61,47,506 0,315,640,1424,3031,3280,3950,4296,5555,7728,7996 +2 121008431 121015120 STRG.8871.3 0 + 121008431 121015120 100,100,100 10 178,60,80,82,97,74,77,278,61,608 0,286,611,1395,3002,3251,3921,4267,5526,6081 +2 121008447 121016904 STRG.8871.2 0 + 121008447 121016904 100,100,100 10 330,80,82,97,74,77,278,61,47,506 0,595,1379,2986,3235,3905,4251,5510,7683,7951 +2 121008466 121011756 STRG.8871.5_j 0 + 121008466 121011756 100,100,100 4 311,80,1704,74 0,576,1360,3216 +2 121008466 121012948 STRG.8871.4 0 + 121008466 121012948 100,100,100 8 143,60,80,82,125,74,77,250 0,251,576,1360,2967,3216,3886,4232 +2 121008703 121010577 STRG.8871.6 0 + 121008703 121010577 100,100,100 3 74,80,751 0,339,1123 +2 121011054 121011756 STRG.8871.7 0 + 121011054 121011756 100,100,100 2 476,74 0,628 +2 120089174 120154606 STRG.8831.1 0 - 120089174 120154606 100,100,100 6 2510,165,413,98,177,367 0,7788,12845,38417,47724,65065 +2 121194837 121221232 STRG.8881.3_j 0 - 121194837 121221232 100,100,100 12 3770,146,200,95,2006,192,431,150,272,153,505,75 0,4138,4769,5465,7705,10082,12861,13517,14243,16432,20829,26320 +2 121199638 121204981 STRG.8881.7 0 - 121199638 121204981 100,100,100 5 168,95,210,216,62 0,664,2904,4694,5281 +2 121199638 121221232 STRG.8881.4_c 0 - 121199638 121221232 100,100,100 11 168,95,216,216,192,431,150,272,153,505,75 0,664,2904,4694,5281,8060,8716,9442,11631,16028,21519 +2 121205080 121208574 STRG.8881.11 0 - 121205080 121208574 100,100,100 3 31,431,220 0,2618,3274 +2 121208844 121221232 STRG.8881.9 0 - 121208844 121221232 100,100,100 4 508,153,505,75 0,2425,6822,12313 +2 121215888 121221379 STRG.8881.14 0 - 121215888 121221379 100,100,100 2 283,222 0,5269 +2 121216142 121247714 STRG.8881.5_j 0 - 121216142 121247714 100,100,100 7 29,93,58,1063,1297,203,214 0,5015,7562,11502,19430,27751,31358 +2 121216142 121270286 STRG.8881.2_c 0 - 121216142 121270286 100,100,100 15 29,93,58,204,120,1297,203,95,127,167,130,159,125,85,68 0,5015,7562,11502,12445,19430,27751,31358,32021,35725,37459,40379,43001,53761,54076 +2 121216142 121271321 STRG.8881.1 0 - 121216142 121271321 100,100,100 16 29,93,58,204,1297,203,95,127,167,130,159,125,85,91,185,50 0,5015,7562,11502,19430,27751,31358,32021,35725,37459,40379,43001,53761,54076,54381,55129 +2 121228368 121235689 STRG.8881.13 0 - 121228368 121235689 100,100,100 2 339,117 0,7204 +2 121256513 121271369 STRG.8881.6 0 - 121256513 121271369 100,100,100 6 167,125,85,91,185,98 0,2630,13390,13705,14010,14758 +2 121258885 121270286 STRG.8881.10 0 - 121258885 121270286 100,100,100 3 383,85,68 0,11018,11333 +2 121267311 121271361 STRG.8881.8 0 - 121267311 121271361 100,100,100 4 2677,91,185,90 0,2907,3212,3960 +2 121269629 121271370 STRG.8881.12 0 - 121269629 121271370 100,100,100 3 359,185,99 0,894,1642 +3 57736061 57835231 STRG.12098.3 0 + 57736061 57835231 100,100,100 10 139,126,81,126,88,91,106,94,81,1746 0,28195,32978,43321,60136,66385,70960,84445,96902,97424 +3 57736081 57833888 STRG.12098.6 0 + 57736081 57833888 100,100,100 2 119,316 0,97491 +3 57736081 57835233 STRG.12098.2 0 + 57736081 57835233 100,100,100 10 119,126,81,126,88,91,106,94,81,1661 0,28175,32958,43301,60116,66365,70940,84425,96882,97491 +3 57736112 57835119 STRG.12098.1 0 + 57736112 57835119 100,100,100 10 88,126,81,126,88,820,106,94,81,1634 0,28144,32927,43270,60085,65605,70909,84394,96851,97373 +3 57736119 57820993 STRG.12098.5_j 0 + 57736119 57820993 100,100,100 9 81,144,126,81,126,88,91,106,487 0,11771,28137,32920,43263,60078,66327,70902,84387 +3 57736119 57833232 STRG.12098.4 0 + 57736119 57833232 100,100,100 9 81,126,81,126,88,91,106,94,269 0,28137,32920,43263,60078,66327,70902,84387,96844 +3 57644348 57651715 STRG.12092.1 0 - 57644348 57651715 100,100,100 5 2528,174,83,78,129 0,5693,6342,7073,7238 +3 57651101 57651715 STRG.12092.2 0 - 57651101 57651715 100,100,100 2 398,129 0,485 +5 110839982 110874133 STRG.22906.2 0 + 110839982 110874133 100,100,100 14 66,338,125,148,109,54,62,100,87,164,116,86,81,654 0,1223,8406,8647,15742,18391,20880,23275,25539,26280,26955,28025,32044,33497 +5 110839999 110874145 STRG.22906.1 0 + 110839999 110874145 100,100,100 15 49,338,125,148,91,109,54,62,100,87,164,116,86,81,666 0,1206,8389,8630,9596,15725,18374,20863,23258,25522,26263,26938,28008,32027,33480 +5 110840253 110874013 STRG.22906.3_j 0 + 110840253 110874013 100,100,100 13 1290,125,148,91,109,54,62,100,87,164,116,86,1987 0,8135,8376,9342,15471,18120,20609,23004,25268,26009,26684,27754,31773 +5 110855689 110868215 STRG.22906.4_j 0 + 110855689 110868215 100,100,100 6 144,54,62,100,87,208 0,2684,5173,7568,9832,12318 +5 110866270 110866720 STRG.22906.5 0 + 110866270 110866720 100,100,100 2 156,185 0,265 +5 110892838 111085034 STRG.22909.1_c 0 + 110892838 111085034 100,100,100 2 272,13 0,192183 +5 111100697 111102068 STRG.22913.1_c 0 + 111100697 111102068 100,100,100 2 269,99 0,1272 +5 111225457 111229415 STRG.22916.1 0 + 111225457 111229415 100,100,100 2 624,68 0,3890 +5 111231100 111235600 STRG.22917.1_c 0 + 111231100 111235600 100,100,100 3 79,219,125 0,2145,4375 +5 111330762 111388359 STRG.22924.1 0 + 111330762 111388359 100,100,100 12 71,31,146,92,8,75,84,78,111,123,85,1857 0,4732,7520,15720,16357,17018,18728,40549,49429,52225,54757,55740 +5 111330806 111388359 STRG.22924.2 0 + 111330806 111388359 100,100,100 11 27,31,146,92,8,75,84,78,111,123,1857 0,4688,7476,15676,16313,16974,18684,40505,49385,52181,55696 +5 111380168 111383703 STRG.22924.3 0 + 111380168 111383703 100,100,100 2 134,716 0,2819 +5 111417441 111454864 STRG.22929.1_j 0 + 111417441 111454864 100,100,100 3 320,2274,249 0,2168,37174 +5 111417441 111457033 STRG.22929.2 0 + 111417441 111457033 100,100,100 2 4442,2418 0,37174 +5 111546620 111566751 STRG.22958.1_u 0 + 111546620 111566751 100,100,100 4 167,77,2000,786 0,7231,15766,19345 +5 111553369 111564411 STRG.22958.2_u 0 + 111553369 111564411 100,100,100 3 559,1223,249 0,9017,10793 +5 111553369 111567041 STRG.22958.3_u 0 + 111553369 111567041 100,100,100 3 559,2000,2005 0,9017,11667 +5 111581567 111582873 STRG.22963.1 0 + 111581567 111582873 100,100,100 2 303,453 0,853 +5 112276690 112315361 STRG.22971.1 0 + 112276690 112315361 100,100,100 7 81,72,912,199,51,49,471 0,27209,30875,32998,34993,36551,38200 +5 112276703 112309032 STRG.22971.3 0 + 112276703 112309032 100,100,100 3 68,72,1467 0,27196,30862 +5 112276706 112315355 STRG.22971.2 0 + 112276706 112315355 100,100,100 6 65,912,199,51,49,465 0,30859,32982,34977,36535,38184 +5 112308290 112309812 STRG.22971.5 0 + 112308290 112309812 100,100,100 2 264,124 0,1398 +5 112312893 112314964 STRG.22971.4 0 + 112312893 112314964 100,100,100 2 397,74 0,1997 +5 112326357 112338073 STRG.22973.1 0 + 112326357 112338073 100,100,100 14 116,186,221,154,157,128,153,528,107,169,244,143,166,1088 0,1127,1604,3008,3389,4733,5510,6606,7217,7959,8502,9215,9657,10628 +5 112335641 112337273 STRG.22973.2 0 + 112335641 112337273 100,100,100 2 539,288 0,1344 +5 112343082 112378414 STRG.22978.2 0 + 112343082 112378414 100,100,100 14 81,1005,91,144,108,117,95,73,37,97,799,133,109,456 0,961,3511,6202,20026,20463,21438,23816,25853,26372,26863,31797,32270,34876 +5 112343092 112344747 STRG.22978.3 0 + 112343092 112344747 100,100,100 2 30,704 0,951 +5 112343094 112378414 STRG.22978.1 0 + 112343094 112378414 100,100,100 14 69,508,91,144,108,117,95,73,37,97,799,133,109,456 0,1446,3499,6190,20014,20451,21426,23804,25841,26360,26851,31785,32258,34864 +5 112343098 112344747 STRG.22978.6_c 0 + 112343098 112344747 100,100,100 2 24,207 0,1442 +5 112368744 112369774 STRG.22978.5 0 + 112368744 112369774 100,100,100 2 228,320 0,710 +5 112375334 112378401 STRG.22978.4 0 + 112375334 112378401 100,100,100 2 127,443 0,2624 +5 112793299 112795691 STRG.22983.1 0 + 112793299 112795691 100,100,100 2 312,277 0,2115 +5 110784487 110810097 STRG.22901.1 0 - 110784487 110810097 100,100,100 28 1740,136,158,119,173,191,144,110,194,269,87,146,126,90,61,148,89,51,83,59,102,74,174,37,33,42,93,484 0,1812,2596,3086,3285,3622,4241,4460,4854,5724,6362,6564,7113,7614,7909,8478,9327,9705,10097,10259,11244,11668,11839,14394,14636,24517,24639,25126 +5 110786038 110787221 STRG.22901.9 0 - 110786038 110787221 100,100,100 2 397,138 0,1045 +5 110786093 110796066 STRG.22901.3_j 0 - 110786093 110796066 100,100,100 20 134,136,158,119,173,191,144,588,269,87,146,126,90,61,148,89,51,83,59,335 0,206,990,1480,1679,2016,2635,2854,4118,4756,4958,5507,6008,6303,6872,7721,8099,8491,8653,9638 +5 110786093 110810053 STRG.22901.2 0 - 110786093 110810053 100,100,100 28 134,136,158,119,173,191,144,110,194,269,105,146,126,90,61,148,89,51,83,59,102,74,174,37,33,42,93,440 0,206,990,1480,1679,2016,2635,2854,3248,4118,4756,4958,5507,6008,6303,6872,7721,8099,8491,8653,9638,10062,10233,12788,13030,22911,23033,23520 +5 110787890 110788667 STRG.22901.7 0 - 110787890 110788667 100,100,100 2 55,558 0,219 +5 110791397 110792192 STRG.22901.8 0 - 110791397 110792192 100,100,100 2 329,91 0,704 +5 110791672 110793405 STRG.22901.6 0 - 110791672 110793405 100,100,100 4 54,90,61,440 0,429,724,1293 +5 110792544 110796066 STRG.22901.5_j 0 - 110792544 110796066 100,100,100 5 569,89,51,221,335 0,1270,1648,2040,3187 +5 110793600 110795834 STRG.22901.4 0 - 110793600 110795834 100,100,100 5 303,51,83,59,103 0,592,984,1146,2131 +5 110829069 110839777 STRG.22905.1 0 - 110829069 110839777 100,100,100 6 142,48,145,90,97,282 0,1866,5585,6910,7237,10426 +5 110829079 110836320 STRG.22905.3 0 - 110829079 110836320 100,100,100 5 132,48,145,95,14 0,1856,5575,6895,7227 +5 110829079 110839575 STRG.22905.2 0 - 110829079 110839575 100,100,100 5 132,48,95,97,80 0,1856,6895,7227,10416 +5 110829080 110834895 STRG.22905.4 0 - 110829080 110834895 100,100,100 3 131,48,241 0,1855,5574 +5 112337391 112340022 STRG.22974.4 0 - 112337391 112340022 100,100,100 5 350,46,250,99,126 0,610,926,2327,2505 +5 112337391 112343020 STRG.22974.2 0 - 112337391 112343020 100,100,100 7 350,46,155,99,227,41,146 0,610,926,2327,2505,3704,5483 +5 112337391 112343040 STRG.22974.1 0 - 112337391 112343040 100,100,100 7 350,72,155,99,227,41,166 0,584,926,2327,2505,3704,5483 +5 112337908 112339932 STRG.22974.5 0 - 112337908 112339932 100,100,100 3 564,99,36 0,1810,1988 +5 112337971 112343018 STRG.22974.3 0 - 112337971 112343018 100,100,100 6 76,250,99,227,41,144 0,346,1747,1925,3124,4903 +5 112339718 112340219 STRG.22974.6 0 - 112339718 112340219 100,100,100 2 99,323 0,178 +5 112419351 112425650 STRG.22982.1_c 0 - 112419351 112425650 100,100,100 3 2687,103,37 0,5271,6262 +5 112688877 112765931 STRG.22984.3 0 - 112688877 112765931 100,100,100 11 220,1240,138,45,131,186,138,84,117,114,97 0,3218,26503,28109,34929,68577,71438,72446,73779,75570,76957 +5 112688917 112871586 STRG.22984.1_c 0 - 112688917 112871586 100,100,100 38 180,1240,138,45,131,186,138,84,117,114,153,105,111,201,124,155,125,109,120,90,144,129,66,110,220,184,160,151,81,193,91,174,145,64,101,143,199,166 0,3178,26463,28069,34889,68537,71398,72406,73739,75530,86335,93667,96639,101072,102159,106477,109899,113448,114271,120744,122668,123068,128712,139059,141242,142153,145457,148833,150699,151702,154286,157353,169484,176322,176739,177426,179276,182503 +5 112772885 112871586 STRG.22984.2 0 - 112772885 112871586 100,100,100 29 1641,388,105,111,201,124,155,125,109,120,90,144,129,66,110,220,184,160,151,81,193,91,174,145,64,101,143,199,166 0,2132,9699,12671,17104,18191,22509,25931,29480,30303,36776,38700,39100,44744,55091,57274,58185,61489,64865,66731,67734,70318,73385,85516,92354,92771,93458,95308,98535 +5 112871741 112874253 STRG.22984.5_j 0 - 112871741 112874253 100,100,100 3 755,67,361 0,1753,2151 +5 112875222 112896379 STRG.22984.4_j 0 - 112875222 112896379 100,100,100 3 104,159,124 0,2762,21033 +5 112879419 112896379 STRG.22984.6_c 0 - 112879419 112896379 100,100,100 2 159,124 0,16836 +5 112910481 113015514 STRG.22985.1 0 - 112910481 113015514 100,100,100 21 4593,114,137,163,96,67,101,67,108,95,131,79,100,92,52,62,75,102,74,77,148 0,5568,8344,9526,13467,14914,18174,19191,27227,31151,34436,36105,43344,44682,46833,51105,56430,58686,63025,75283,104885 +5 112912598 113015514 STRG.22985.2 0 - 112912598 113015514 100,100,100 21 2476,114,137,163,96,67,101,67,108,95,131,79,100,92,52,62,75,141,74,77,148 0,3451,6227,7409,11350,12797,16057,17074,25110,29034,32319,33988,41227,42565,44716,48988,54313,56569,60908,73166,102768 +5 112916109 112924375 STRG.22985.4 0 - 112916109 112924375 100,100,100 4 54,137,163,427 0,2716,3898,7839 +5 112920061 112925798 STRG.22985.5 0 - 112920061 112925798 100,100,100 3 109,96,554 0,3887,5183 +5 112960543 113015503 STRG.22985.3 0 - 112960543 113015503 100,100,100 6 1105,75,102,74,77,137 0,6368,8624,12963,25221,54823 +5 113086322 113163351 STRG.22991.1 0 - 113086322 113163351 100,100,100 8 4702,83,143,119,175,241,119,294 0,6092,6779,7643,9267,11275,15136,76735 +5 113184127 113192079 STRG.22997.1_u 0 - 113184127 113192079 100,100,100 3 590,88,1476 0,4158,6476 +12 69229664 69231901 STRG.52020.2_u 0 + 69229664 69231901 100,100,100 2 62,203 0,2034 +12 69199878 69228169 STRG.52021.2_j 0 - 69199878 69228169 100,100,100 18 2004,68,177,109,78,60,55,683,73,49,57,84,75,94,78,76,101,73 0,3028,4212,6531,7980,8142,9038,9433,11494,12344,13108,13950,15432,22098,22520,23225,26459,28218 +12 69201778 69228190 STRG.52021.1 0 - 69201778 69228190 100,100,100 19 104,68,177,109,78,60,55,90,173,73,49,57,84,75,94,78,76,101,94 0,1128,2312,4631,6080,6242,7138,7533,8043,9594,10444,11208,12050,13532,20198,20620,21325,24559,26318
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/gffcompare_output_j.bed Thu Jan 11 11:16:51 2018 -0500 @@ -0,0 +1,20 @@ +1 86703842 87050092 STRG.2299.4_j 0 + 86703842 87050092 100,100,100 21 29,148,158,54,102,78,229,101,248,174,80,113,234,80,184,87,148,131,105,102,470 0,40838,41498,50384,56445,108669,117379,150517,153284,174560,226911,255900,286249,317195,340174,340987,343194,343605,343845,344990,345780 +1 86754158 86767638 STRG.2299.6_j 0 + 86754158 86767638 100,100,100 3 122,102,509 0,6129,12971 +1 9942024 9944103 STRG.229.6_j 0 - 9942024 9944103 100,100,100 3 131,395,84 0,298,1995 +1 9942024 9944103 STRG.229.3_j 0 - 9942024 9944103 100,100,100 4 131,62,108,84 0,298,585,1995 +1 193145390 193173087 STRG.5202.1_j 0 + 193145390 193173087 100,100,100 8 42,177,205,129,159,393,119,3806 0,11825,16222,17211,20375,22048,23126,23891 +1 193167974 193173087 STRG.5202.3_j 0 + 193167974 193173087 100,100,100 3 157,119,3806 0,542,1307 +2 119749138 119749844 STRG.8811.1_j 0 + 119749138 119749844 100,100,100 3 148,217,172 0,223,534 +2 119972463 120018974 STRG.8821.1_j 0 + 119972463 120018974 100,100,100 19 17,223,92,63,58,171,138,183,161,190,147,176,92,126,71,122,76,112,53 0,482,26018,38279,38538,39469,40129,40448,41155,42159,42879,43229,44316,44676,45117,45292,45835,46024,46458 +2 121008466 121011756 STRG.8871.5_j 0 + 121008466 121011756 100,100,100 4 311,80,1704,74 0,576,1360,3216 +2 121194837 121221232 STRG.8881.3_j 0 - 121194837 121221232 100,100,100 12 3770,146,200,95,2006,192,431,150,272,153,505,75 0,4138,4769,5465,7705,10082,12861,13517,14243,16432,20829,26320 +2 121216142 121247714 STRG.8881.5_j 0 - 121216142 121247714 100,100,100 7 29,93,58,1063,1297,203,214 0,5015,7562,11502,19430,27751,31358 +3 57736119 57820993 STRG.12098.5_j 0 + 57736119 57820993 100,100,100 9 81,144,126,81,126,88,91,106,487 0,11771,28137,32920,43263,60078,66327,70902,84387 +5 110840253 110874013 STRG.22906.3_j 0 + 110840253 110874013 100,100,100 13 1290,125,148,91,109,54,62,100,87,164,116,86,1987 0,8135,8376,9342,15471,18120,20609,23004,25268,26009,26684,27754,31773 +5 110855689 110868215 STRG.22906.4_j 0 + 110855689 110868215 100,100,100 6 144,54,62,100,87,208 0,2684,5173,7568,9832,12318 +5 111417441 111454864 STRG.22929.1_j 0 + 111417441 111454864 100,100,100 3 320,2274,249 0,2168,37174 +5 110786093 110796066 STRG.22901.3_j 0 - 110786093 110796066 100,100,100 20 134,136,158,119,173,191,144,588,269,87,146,126,90,61,148,89,51,83,59,335 0,206,990,1480,1679,2016,2635,2854,4118,4756,4958,5507,6008,6303,6872,7721,8099,8491,8653,9638 +5 110792544 110796066 STRG.22901.5_j 0 - 110792544 110796066 100,100,100 5 569,89,51,221,335 0,1270,1648,2040,3187 +5 112871741 112874253 STRG.22984.5_j 0 - 112871741 112874253 100,100,100 3 755,67,361 0,1753,2151 +5 112875222 112896379 STRG.22984.4_j 0 - 112875222 112896379 100,100,100 3 104,159,124 0,2762,21033 +12 69199878 69228169 STRG.52021.2_j 0 - 69199878 69228169 100,100,100 18 2004,68,177,109,78,60,55,683,73,49,57,84,75,94,78,76,101,73 0,3028,4212,6531,7980,8142,9038,9433,11494,12344,13108,13950,15432,22098,22520,23225,26459,28218
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/gffcompare_output_jeipux.bed Thu Jan 11 11:16:51 2018 -0500 @@ -0,0 +1,29 @@ +1 43776566 43778980 STRG.1163.2_i 0 - 43776566 43778980 100,100,100 3 1094,244,100 0,1948,2314 +1 43776566 43778980 STRG.1163.1_i 0 - 43776566 43778980 100,100,100 3 1155,122,100 0,1887,2314 +1 6453836 6460700 STRG.88.1_u 0 + 6453836 6460700 100,100,100 2 50,156 0,6708 +1 86703842 87050092 STRG.2299.4_j 0 + 86703842 87050092 100,100,100 21 29,148,158,54,102,78,229,101,248,174,80,113,234,80,184,87,148,131,105,102,470 0,40838,41498,50384,56445,108669,117379,150517,153284,174560,226911,255900,286249,317195,340174,340987,343194,343605,343845,344990,345780 +1 86754158 86767638 STRG.2299.6_j 0 + 86754158 86767638 100,100,100 3 122,102,509 0,6129,12971 +1 9942024 9944103 STRG.229.6_j 0 - 9942024 9944103 100,100,100 3 131,395,84 0,298,1995 +1 9942024 9944103 STRG.229.3_j 0 - 9942024 9944103 100,100,100 4 131,62,108,84 0,298,585,1995 +1 86908792 86909683 STRG.2297.1_i 0 - 86908792 86909683 100,100,100 2 319,285 0,606 +1 193145390 193173087 STRG.5202.1_j 0 + 193145390 193173087 100,100,100 8 42,177,205,129,159,393,119,3806 0,11825,16222,17211,20375,22048,23126,23891 +1 193167974 193173087 STRG.5202.3_j 0 + 193167974 193173087 100,100,100 3 157,119,3806 0,542,1307 +2 119749138 119749844 STRG.8811.1_j 0 + 119749138 119749844 100,100,100 3 148,217,172 0,223,534 +2 119972463 120018974 STRG.8821.1_j 0 + 119972463 120018974 100,100,100 19 17,223,92,63,58,171,138,183,161,190,147,176,92,126,71,122,76,112,53 0,482,26018,38279,38538,39469,40129,40448,41155,42159,42879,43229,44316,44676,45117,45292,45835,46024,46458 +2 121008466 121011756 STRG.8871.5_j 0 + 121008466 121011756 100,100,100 4 311,80,1704,74 0,576,1360,3216 +2 121194837 121221232 STRG.8881.3_j 0 - 121194837 121221232 100,100,100 12 3770,146,200,95,2006,192,431,150,272,153,505,75 0,4138,4769,5465,7705,10082,12861,13517,14243,16432,20829,26320 +2 121216142 121247714 STRG.8881.5_j 0 - 121216142 121247714 100,100,100 7 29,93,58,1063,1297,203,214 0,5015,7562,11502,19430,27751,31358 +3 57736119 57820993 STRG.12098.5_j 0 + 57736119 57820993 100,100,100 9 81,144,126,81,126,88,91,106,487 0,11771,28137,32920,43263,60078,66327,70902,84387 +5 110840253 110874013 STRG.22906.3_j 0 + 110840253 110874013 100,100,100 13 1290,125,148,91,109,54,62,100,87,164,116,86,1987 0,8135,8376,9342,15471,18120,20609,23004,25268,26009,26684,27754,31773 +5 110855689 110868215 STRG.22906.4_j 0 + 110855689 110868215 100,100,100 6 144,54,62,100,87,208 0,2684,5173,7568,9832,12318 +5 111417441 111454864 STRG.22929.1_j 0 + 111417441 111454864 100,100,100 3 320,2274,249 0,2168,37174 +5 111546620 111566751 STRG.22958.1_u 0 + 111546620 111566751 100,100,100 4 167,77,2000,786 0,7231,15766,19345 +5 111553369 111564411 STRG.22958.2_u 0 + 111553369 111564411 100,100,100 3 559,1223,249 0,9017,10793 +5 111553369 111567041 STRG.22958.3_u 0 + 111553369 111567041 100,100,100 3 559,2000,2005 0,9017,11667 +5 110786093 110796066 STRG.22901.3_j 0 - 110786093 110796066 100,100,100 20 134,136,158,119,173,191,144,588,269,87,146,126,90,61,148,89,51,83,59,335 0,206,990,1480,1679,2016,2635,2854,4118,4756,4958,5507,6008,6303,6872,7721,8099,8491,8653,9638 +5 110792544 110796066 STRG.22901.5_j 0 - 110792544 110796066 100,100,100 5 569,89,51,221,335 0,1270,1648,2040,3187 +5 112871741 112874253 STRG.22984.5_j 0 - 112871741 112874253 100,100,100 3 755,67,361 0,1753,2151 +5 112875222 112896379 STRG.22984.4_j 0 - 112875222 112896379 100,100,100 3 104,159,124 0,2762,21033 +5 113184127 113192079 STRG.22997.1_u 0 - 113184127 113192079 100,100,100 3 590,88,1476 0,4158,6476 +12 69229664 69231901 STRG.52020.2_u 0 + 69229664 69231901 100,100,100 2 62,203 0,2034 +12 69199878 69228169 STRG.52021.2_j 0 - 69199878 69228169 100,100,100 18 2004,68,177,109,78,60,55,683,73,49,57,84,75,94,78,76,101,73 0,3028,4212,6531,7980,8142,9038,9433,11494,12344,13108,13950,15432,22098,22520,23225,26459,28218