Mercurial > repos > galaxyp > hardklor
comparison kronik.xml @ 6:73fc27617b2e draft default tip
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/hardklor commit 44c3e37a12f60b01521d3e3f18b7f16664f954cc"
| author | galaxyp |
|---|---|
| date | Tue, 07 Apr 2020 03:27:32 -0400 |
| parents | 539f157784e7 |
| children |
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| 5:c5b3b7eafd46 | 6:73fc27617b2e |
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| 1 <tool id="kronik" name="Kronik" version="2.20"> | 1 <tool id="kronik" name="Kronik" version="2.20+galaxy1"> |
| 2 <description>processes Hardklor features to find peptides by chromatographic profiling</description> | 2 <description>processes Hardklor features to find peptides by chromatographic profiling</description> |
| 3 <requirements> | 3 <requirements> |
| 4 <requirement type="package" version="2.20">kronik</requirement> | 4 <requirement type="package" version="2.20">kronik</requirement> |
| 5 </requirements> | 5 </requirements> |
| 6 <stdio> | 6 <stdio> |
| 7 <exit_code range="1:" level="fatal" description="Error occurred while running Kronik"/> | 7 <exit_code range="1:" level="fatal" description="Error occurred while running Kronik"/> |
| 8 </stdio> | 8 </stdio> |
| 9 <command>kronik -c $c -d $d -g $g -m $m -n $n -p $p "$inputfile" "$output"</command> | 9 <command>kronik -c $c -d $d -g $g -m $m -n $n -p $p '$inputfile' '$output'</command> |
| 10 <inputs> | 10 <inputs> |
| 11 <param name="inputfile" type="data" format="hardklor" label="Hardklör isotope distributions" /> | 11 <param name="inputfile" type="data" format="hardklor" label="Hardklör isotope distributions" /> |
| 12 <param name="c" type="integer" value="5" label="Contaminant threshold in minutes" help="Peptides persisting for longer than this value are excluded" /> | 12 <param name="c" type="integer" value="5" label="Contaminant threshold in minutes" help="Peptides persisting for longer than this value are excluded" /> |
| 13 <param name="d" type="integer" value="3" label="Match tolerance" help="Minimum consecutive scans peptide must be found in" /> | 13 <param name="d" type="integer" value="3" label="Match tolerance" help="Minimum consecutive scans peptide must be found in" /> |
| 14 <param name="g" type="integer" value="1" label="Gap tolerance" help="Maximum amount of scans a peptide can skip to be considered in results" /> | 14 <param name="g" type="integer" value="1" label="Gap tolerance" help="Maximum amount of scans a peptide can skip to be considered in results" /> |