maldi_quant_preprocessing: test-data/peak

annotate test-data/peak_detection3.imzml @ 3:71411ac28268 draft

planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/MALDIquant commit f127be2141cf22e269c85282d226eb16fe14a9c1

author	galaxyp
date	Fri, 15 Feb 2019 10:26:00 -0500
parents
children	60ee8c592b13

rev	line source
3 71411ac28268 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/MALDIquant commit f127be2141cf22e269c85282d226eb16fe14a9c1 galaxyp parents: diff changeset	1 <?xml version="1.0" encoding="utf-8"?>
71411ac28268 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/MALDIquant commit f127be2141cf22e269c85282d226eb16fe14a9c1 galaxyp parents: diff changeset	2 <mzML xmlns="http://psi.hupo.org/ms/mzml" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://psi.hupo.org/ms/mzml http://psidev.info/files/ms/mzML/xsd/mzML1.1.0.xsd" id="out" version="1.1.0">
71411ac28268 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/MALDIquant commit f127be2141cf22e269c85282d226eb16fe14a9c1 galaxyp parents: diff changeset	3 <cvList count="2">
71411ac28268 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/MALDIquant commit f127be2141cf22e269c85282d226eb16fe14a9c1 galaxyp parents: diff changeset	4 <cv id="MS" fullName="Proteomics Standards Initiative Mass Spectrometry Ontology" version="3.44.0" URI="http://psidev.cvs.sourceforge.net/checkout/psidev/psi/psi-ms/mzML/controlledVocabulary/psi-ms.obo"/>
71411ac28268 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/MALDIquant commit f127be2141cf22e269c85282d226eb16fe14a9c1 galaxyp parents: diff changeset	5 <cv id="UO" fullName="Unit Ontology" version="12:10:2012" URI="http://obo.cvs.sourceforge.net/checkout/obo/obo/ontology/phenotype/unit.obo"/>
71411ac28268 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/MALDIquant commit f127be2141cf22e269c85282d226eb16fe14a9c1 galaxyp parents: diff changeset	6 <cv id="IMS" fullName="Imaging MS Ontology" version="0.9.1" URI="http://www.maldi-msi.org/download/imzml/imagingMS.obo"/>
71411ac28268 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/MALDIquant commit f127be2141cf22e269c85282d226eb16fe14a9c1 galaxyp parents: diff changeset	7 </cvList>
71411ac28268 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/MALDIquant commit f127be2141cf22e269c85282d226eb16fe14a9c1 galaxyp parents: diff changeset	8 <fileDescription>
71411ac28268 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/MALDIquant commit f127be2141cf22e269c85282d226eb16fe14a9c1 galaxyp parents: diff changeset	9 <fileContent>
71411ac28268 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/MALDIquant commit f127be2141cf22e269c85282d226eb16fe14a9c1 galaxyp parents: diff changeset	10 <cvParam cvRef="MS" accession="MS:1000579" name="MS1 spectrum"/>
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71411ac28268 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/MALDIquant commit f127be2141cf22e269c85282d226eb16fe14a9c1 galaxyp parents: diff changeset	12 <cvParam cvRef="IMS" accession="IMS:1000091" name="ibd SHA-1" value="59e17ebe18b0559646ba7a17e709054397f086ea"/>
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71411ac28268 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/MALDIquant commit f127be2141cf22e269c85282d226eb16fe14a9c1 galaxyp parents: diff changeset	14 <userParam name="MALDIquantForeign" value="MALDIquant object(s) exported to mzML"/>
71411ac28268 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/MALDIquant commit f127be2141cf22e269c85282d226eb16fe14a9c1 galaxyp parents: diff changeset	15 </fileContent>
71411ac28268 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/MALDIquant commit f127be2141cf22e269c85282d226eb16fe14a9c1 galaxyp parents: diff changeset	16 <sourceFileList count="1">
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71411ac28268 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/MALDIquant commit f127be2141cf22e269c85282d226eb16fe14a9c1 galaxyp parents: diff changeset	299 <scanList count="1">
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71411ac28268 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/MALDIquant commit f127be2141cf22e269c85282d226eb16fe14a9c1 galaxyp parents: diff changeset	305 <binaryDataArrayList count="2">
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71411ac28268 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/MALDIquant commit f127be2141cf22e269c85282d226eb16fe14a9c1 galaxyp parents: diff changeset	308 <cvParam cvRef="IMS" accession="IMS:1000102" name="external offset" value="4320"/>
71411ac28268 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/MALDIquant commit f127be2141cf22e269c85282d226eb16fe14a9c1 galaxyp parents: diff changeset	309 <cvParam cvRef="IMS" accession="IMS:1000103" name="external array length" value="28"/>
71411ac28268 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/MALDIquant commit f127be2141cf22e269c85282d226eb16fe14a9c1 galaxyp parents: diff changeset	310 <cvParam cvRef="IMS" accession="IMS:1000104" name="external encoded length" value="224"/>
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71411ac28268 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/MALDIquant commit f127be2141cf22e269c85282d226eb16fe14a9c1 galaxyp parents: diff changeset	315 <cvParam cvRef="IMS" accession="IMS:1000102" name="external offset" value="4544"/>
71411ac28268 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/MALDIquant commit f127be2141cf22e269c85282d226eb16fe14a9c1 galaxyp parents: diff changeset	316 <cvParam cvRef="IMS" accession="IMS:1000103" name="external array length" value="28"/>
71411ac28268 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/MALDIquant commit f127be2141cf22e269c85282d226eb16fe14a9c1 galaxyp parents: diff changeset	317 <cvParam cvRef="IMS" accession="IMS:1000104" name="external encoded length" value="224"/>
71411ac28268 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/MALDIquant commit f127be2141cf22e269c85282d226eb16fe14a9c1 galaxyp parents: diff changeset	318 <binary/>
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71411ac28268 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/MALDIquant commit f127be2141cf22e269c85282d226eb16fe14a9c1 galaxyp parents: diff changeset	320 </binaryDataArrayList>
71411ac28268 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/MALDIquant commit f127be2141cf22e269c85282d226eb16fe14a9c1 galaxyp parents: diff changeset	321 </spectrum>
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71411ac28268 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/MALDIquant commit f127be2141cf22e269c85282d226eb16fe14a9c1 galaxyp parents: diff changeset	324 </mzML>

Mercurial > repos > galaxyp > maldi_quant_preprocessing

annotate test-data/peak_detection3.imzml @ 3:71411ac28268 draft