Mercurial > repos > galaxyp > maxquant
annotate test-data/10/mqpar.xml @ 20:837224ad1694 draft
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 86de2cd327423c44d042f98108dc93a8f83982d0
author | galaxyp |
---|---|
date | Tue, 31 Jan 2023 18:14:40 +0000 |
parents | 97a7f34fcb6a |
children | 8934bc76bb52 |
rev | line source |
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15
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
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changeset
|
1 <?xml version="1.0" ?> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
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2 <MaxQuantParams> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
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|
3 <fastaFiles> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
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4 <FastaFileInfo> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
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5 <fastaFilePath>/tmp/tmps9fy8_y6/files/0/d/3/dataset_0d32c02a-47ca-47c8-83b6-1e955f377a96.dat</fastaFilePath> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
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changeset
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6 <identifierParseRule>^>.*\|(.*)\|.*$</identifierParseRule> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
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changeset
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7 <descriptionParseRule>^>.*\|.*\|[^ ]+ (.*) OS.*$</descriptionParseRule> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
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8 <taxonomyParseRule/> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
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9 <variationParseRule/> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
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changeset
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10 <modificationParseRule/> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
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11 <taxonomyId/> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
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12 </FastaFileInfo> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
|
13 </fastaFiles> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
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changeset
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14 <fastaFilesProteogenomics> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
|
15 </fastaFilesProteogenomics> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
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16 <fastaFilesFirstSearch> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
|
17 </fastaFilesFirstSearch> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
|
18 <fixedSearchFolder/> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
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19 <andromedaCacheSize>350000</andromedaCacheSize> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
|
20 <advancedRatios>True</advancedRatios> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
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changeset
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21 <pvalThres>0.005</pvalThres> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
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changeset
|
22 <rtShift>False</rtShift> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
|
23 <separateLfq>False</separateLfq> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
|
24 <lfqStabilizeLargeRatios>True</lfqStabilizeLargeRatios> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
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25 <lfqRequireMsms>True</lfqRequireMsms> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
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26 <decoyMode>revert</decoyMode> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
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27 <boxCarMode>all</boxCarMode> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
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28 <includeContaminants>True</includeContaminants> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
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29 <maxPeptideMass>4600</maxPeptideMass> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
|
30 <epsilonMutationScore>True</epsilonMutationScore> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
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31 <mutatedPeptidesSeparately>True</mutatedPeptidesSeparately> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
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32 <proteogenomicPeptidesSeparately>True</proteogenomicPeptidesSeparately> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
|
33 <minDeltaScoreUnmodifiedPeptides>0</minDeltaScoreUnmodifiedPeptides> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
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34 <minDeltaScoreModifiedPeptides>6</minDeltaScoreModifiedPeptides> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
|
35 <minScoreUnmodifiedPeptides>0</minScoreUnmodifiedPeptides> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
|
36 <minScoreModifiedPeptides>40</minScoreModifiedPeptides> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
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37 <secondPeptide>True</secondPeptide> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
|
38 <matchBetweenRuns>False</matchBetweenRuns> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
|
39 <matchUnidentifiedFeatures>False</matchUnidentifiedFeatures> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
|
40 <matchBetweenRunsFdr>False</matchBetweenRunsFdr> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
|
41 <dependentPeptides>False</dependentPeptides> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
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42 <dependentPeptideFdr>0</dependentPeptideFdr> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
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43 <dependentPeptideMassBin>0</dependentPeptideMassBin> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
|
44 <dependentPeptidesBetweenRuns>False</dependentPeptidesBetweenRuns> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
|
45 <dependentPeptidesWithinExperiment>False</dependentPeptidesWithinExperiment> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
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46 <dependentPeptidesWithinParameterGroup>False</dependentPeptidesWithinParameterGroup> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
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47 <dependentPeptidesRestrictFractions>False</dependentPeptidesRestrictFractions> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
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48 <dependentPeptidesFractionDifference>0</dependentPeptidesFractionDifference> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
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49 <ibaq>False</ibaq> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
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50 <top3>False</top3> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
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|
51 <independentEnzymes>False</independentEnzymes> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
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52 <useDeltaScore>False</useDeltaScore> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
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53 <splitProteinGroupsByTaxonomy>False</splitProteinGroupsByTaxonomy> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
|
54 <taxonomyLevel>Species</taxonomyLevel> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
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55 <avalon>False</avalon> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
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56 <nModColumns>3</nModColumns> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
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57 <ibaqLogFit>False</ibaqLogFit> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
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58 <razorProteinFdr>True</razorProteinFdr> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
|
59 <deNovoSequencing>False</deNovoSequencing> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
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60 <deNovoVarMods>True</deNovoVarMods> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
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61 <massDifferenceSearch>False</massDifferenceSearch> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
|
62 <isotopeCalc>False</isotopeCalc> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
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63 <writePeptidesForSpectrumFile/> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
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|
64 <intensityPredictionsFile> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
|
65 </intensityPredictionsFile> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
|
66 <minPepLen>7</minPepLen> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
|
67 <psmFdrCrosslink>0.01</psmFdrCrosslink> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
|
68 <peptideFdr>0.01</peptideFdr> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
|
69 <proteinFdr>0.01</proteinFdr> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
|
70 <siteFdr>0.01</siteFdr> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
|
71 <minPeptideLengthForUnspecificSearch>8</minPeptideLengthForUnspecificSearch> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
|
72 <maxPeptideLengthForUnspecificSearch>25</maxPeptideLengthForUnspecificSearch> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
|
73 <useNormRatiosForOccupancy>True</useNormRatiosForOccupancy> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
|
74 <minPeptides>1</minPeptides> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
|
75 <minRazorPeptides>1</minRazorPeptides> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
|
76 <minUniquePeptides>1</minUniquePeptides> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
|
77 <useCounterparts>True</useCounterparts> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
|
78 <advancedSiteIntensities>True</advancedSiteIntensities> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
|
79 <customProteinQuantification>False</customProteinQuantification> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
|
80 <customProteinQuantificationFile/> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
|
81 <minRatioCount>2</minRatioCount> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
|
82 <restrictProteinQuantification>True</restrictProteinQuantification> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
|
83 <restrictMods> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
|
84 <string>Oxidation (M)</string> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
|
85 <string>Acetyl (Protein N-term)</string> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
|
86 </restrictMods> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
|
87 <matchingTimeWindow>0</matchingTimeWindow> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
|
88 <matchingIonMobilityWindow>0</matchingIonMobilityWindow> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
|
89 <alignmentTimeWindow>0</alignmentTimeWindow> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
|
90 <alignmentIonMobilityWindow>0</alignmentIonMobilityWindow> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
|
91 <numberOfCandidatesMsms>15</numberOfCandidatesMsms> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
|
92 <compositionPrediction>0</compositionPrediction> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
|
93 <quantMode>1</quantMode> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
|
94 <massDifferenceMods> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
|
95 </massDifferenceMods> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
|
96 <mainSearchMaxCombinations>200</mainSearchMaxCombinations> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
|
97 <writeMsScansTable>False</writeMsScansTable> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
|
98 <writeMsmsScansTable>True</writeMsmsScansTable> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
|
99 <writePasefMsmsScansTable>True</writePasefMsmsScansTable> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
|
100 <writeAccumulatedPasefMsmsScansTable>False</writeAccumulatedPasefMsmsScansTable> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
|
101 <writeMs3ScansTable>True</writeMs3ScansTable> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
|
102 <writeAllPeptidesTable>True</writeAllPeptidesTable> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
|
103 <writeMzRangeTable>True</writeMzRangeTable> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
|
104 <writeDiaFragmentTable>False</writeDiaFragmentTable> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
|
105 <writeMzTab>False</writeMzTab> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
|
106 <disableMd5>False</disableMd5> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
|
107 <cacheBinInds>True</cacheBinInds> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
|
108 <etdIncludeB>False</etdIncludeB> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
|
109 <ms2PrecursorShift>0</ms2PrecursorShift> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
|
110 <complementaryIonPpm>20</complementaryIonPpm> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
|
111 <variationParseRule/> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
|
112 <variationMode>none</variationMode> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
|
113 <useSeriesReporters>False</useSeriesReporters> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
|
114 <name>templateSession</name> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
|
115 <maxQuantVersion>1.6.17.0</maxQuantVersion> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
|
116 <pluginFolder/> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
|
117 <numThreads>1</numThreads> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
|
118 <batchSize>1</batchSize> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
|
119 <emailAddress/> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
|
120 <smtpHost/> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
|
121 <emailFromAddress/> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
|
122 <fixedCombinedFolder/> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
|
123 <fullMinMz>-1.79769313486232E+308</fullMinMz> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
|
124 <fullMaxMz>1.79769313486232E+308</fullMaxMz> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
|
125 <sendEmail>False</sendEmail> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
|
126 <ionCountIntensities>False</ionCountIntensities> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
|
127 <verboseColumnHeaders>False</verboseColumnHeaders> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
|
128 <calcPeakProperties>False</calcPeakProperties> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
|
129 <showCentroidMassDifferences>False</showCentroidMassDifferences> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
|
130 <showIsotopeMassDifferences>False</showIsotopeMassDifferences> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
|
131 <useDotNetCore>True</useDotNetCore> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
|
132 <profilePerformance>False</profilePerformance> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
|
133 <filePaths> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
|
134 <string>/tmp/tmps9fy8_y6/job_working_directory/000/3/working/thermo.raw.thermo.raw</string> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
|
135 </filePaths> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
|
136 <experiments> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
|
137 <string>thermo.raw.thermo.raw</string> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
|
138 </experiments> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
|
139 <fractions> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
|
140 <short>32767</short> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
|
141 </fractions> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
|
142 <ptms> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
|
143 <boolean>False</boolean> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
|
144 </ptms> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
|
145 <paramGroupIndices> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
|
146 <int>0</int> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
|
147 </paramGroupIndices> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
|
148 <referenceChannel> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
|
149 <string/> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
|
150 </referenceChannel> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
|
151 <intensPred>False</intensPred> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
|
152 <intensPredModelReTrain>False</intensPredModelReTrain> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
|
153 <lfqTopNPeptides>0</lfqTopNPeptides> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
|
154 <parameterGroups> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
|
155 <parameterGroup> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
|
156 <msInstrument>0</msInstrument> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
|
157 <maxCharge>7</maxCharge> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
|
158 <minPeakLen>2</minPeakLen> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
|
159 <diaMinPeakLen>1</diaMinPeakLen> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
|
160 <useMs1Centroids>False</useMs1Centroids> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
|
161 <useMs2Centroids>False</useMs2Centroids> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
|
162 <cutPeaks>True</cutPeaks> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
|
163 <gapScans>1</gapScans> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
|
164 <minTime>NaN</minTime> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
|
165 <maxTime>NaN</maxTime> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
|
166 <matchType>MatchFromAndTo</matchType> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
|
167 <intensityDetermination>0</intensityDetermination> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
|
168 <centroidMatchTol>8</centroidMatchTol> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
|
169 <centroidMatchTolInPpm>True</centroidMatchTolInPpm> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
|
170 <centroidHalfWidth>35</centroidHalfWidth> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
|
171 <centroidHalfWidthInPpm>True</centroidHalfWidthInPpm> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
|
172 <valleyFactor>1.4</valleyFactor> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
|
173 <isotopeValleyFactor>1.2</isotopeValleyFactor> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
|
174 <advancedPeakSplitting>False</advancedPeakSplitting> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
|
175 <intensityThresholdMs1>0</intensityThresholdMs1> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
|
176 <intensityThresholdMs2>0</intensityThresholdMs2> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
|
177 <labelMods> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
|
178 <string/> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
|
179 </labelMods> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
|
180 <lcmsRunType>Standard</lcmsRunType> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
|
181 <reQuantify>False</reQuantify> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
|
182 <lfqMode>1</lfqMode> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
|
183 <lfqNormClusterSize>80</lfqNormClusterSize> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
|
184 <lfqMinEdgesPerNode>3</lfqMinEdgesPerNode> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
|
185 <lfqAvEdgesPerNode>6</lfqAvEdgesPerNode> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
|
186 <lfqMaxFeatures>100000</lfqMaxFeatures> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
|
187 <neucodeMaxPpm>0</neucodeMaxPpm> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
|
188 <neucodeResolution>0</neucodeResolution> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
|
189 <neucodeResolutionInMda>False</neucodeResolutionInMda> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
|
190 <neucodeInSilicoLowRes>False</neucodeInSilicoLowRes> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
|
191 <fastLfq>True</fastLfq> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
|
192 <lfqRestrictFeatures>False</lfqRestrictFeatures> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
|
193 <lfqMinRatioCount>2</lfqMinRatioCount> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
|
194 <maxLabeledAa>0</maxLabeledAa> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
|
195 <maxNmods>5</maxNmods> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
|
196 <maxMissedCleavages>1</maxMissedCleavages> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
|
197 <multiplicity>1</multiplicity> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
|
198 <enzymeMode>0</enzymeMode> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
|
199 <complementaryReporterType>0</complementaryReporterType> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
|
200 <reporterNormalization>0</reporterNormalization> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
|
201 <neucodeIntensityMode>0</neucodeIntensityMode> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
|
202 <fixedModifications> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
|
203 <string>Carbamidomethyl (C)</string> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
|
204 </fixedModifications> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
|
205 <enzymes> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
|
206 <string>Trypsin/P</string> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
|
207 </enzymes> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
|
208 <enzymesFirstSearch> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
|
209 </enzymesFirstSearch> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
|
210 <enzymeModeFirstSearch>0</enzymeModeFirstSearch> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
|
211 <useEnzymeFirstSearch>False</useEnzymeFirstSearch> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
|
212 <useVariableModificationsFirstSearch>False</useVariableModificationsFirstSearch> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
|
213 <variableModifications> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
|
214 <string>Oxidation (M)</string> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
|
215 </variableModifications> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
|
216 <useMultiModification>False</useMultiModification> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
|
217 <multiModifications> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
|
218 </multiModifications> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
|
219 <isobaricLabels> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
|
220 </isobaricLabels> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
|
221 <neucodeLabels> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
|
222 </neucodeLabels> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
|
223 <variableModificationsFirstSearch> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
|
224 </variableModificationsFirstSearch> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
|
225 <hasAdditionalVariableModifications>False</hasAdditionalVariableModifications> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
|
226 <additionalVariableModifications> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
|
227 </additionalVariableModifications> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
|
228 <additionalVariableModificationProteins> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
|
229 </additionalVariableModificationProteins> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
|
230 <doMassFiltering>True</doMassFiltering> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
|
231 <firstSearchTol>20</firstSearchTol> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
|
232 <mainSearchTol>4.5</mainSearchTol> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
|
233 <searchTolInPpm>True</searchTolInPpm> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
|
234 <isotopeMatchTol>2</isotopeMatchTol> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
|
235 <isotopeMatchTolInPpm>True</isotopeMatchTolInPpm> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
|
236 <isotopeTimeCorrelation>0.6</isotopeTimeCorrelation> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
|
237 <theorIsotopeCorrelation>0.6</theorIsotopeCorrelation> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
|
238 <checkMassDeficit>True</checkMassDeficit> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
|
239 <recalibrationInPpm>True</recalibrationInPpm> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
|
240 <intensityDependentCalibration>False</intensityDependentCalibration> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
|
241 <minScoreForCalibration>70</minScoreForCalibration> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
|
242 <matchLibraryFile>False</matchLibraryFile> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
|
243 <libraryFile/> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
|
244 <matchLibraryMassTolPpm>0</matchLibraryMassTolPpm> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
|
245 <matchLibraryTimeTolMin>0</matchLibraryTimeTolMin> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
|
246 <matchLabelTimeTolMin>0</matchLabelTimeTolMin> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
|
247 <reporterMassTolerance>NaN</reporterMassTolerance> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
|
248 <reporterPif>NaN</reporterPif> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
|
249 <filterPif>False</filterPif> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
|
250 <reporterFraction>NaN</reporterFraction> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
|
251 <reporterBasePeakRatio>NaN</reporterBasePeakRatio> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
|
252 <timsHalfWidth>0</timsHalfWidth> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
|
253 <timsStep>0</timsStep> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
|
254 <timsResolution>0</timsResolution> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
|
255 <timsMinMsmsIntensity>0</timsMinMsmsIntensity> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
|
256 <timsRemovePrecursor>True</timsRemovePrecursor> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
|
257 <timsIsobaricLabels>False</timsIsobaricLabels> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
|
258 <timsCollapseMsms>True</timsCollapseMsms> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
|
259 <crossLinkingType>0</crossLinkingType> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
|
260 <crossLinker/> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
|
261 <minMatchXl>0</minMatchXl> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
|
262 <minPairedPepLenXl>6</minPairedPepLenXl> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
|
263 <crosslinkOnlyIntraProtein>False</crosslinkOnlyIntraProtein> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
|
264 <crosslinkMaxMonoUnsaturated>0</crosslinkMaxMonoUnsaturated> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
|
265 <crosslinkMaxMonoSaturated>0</crosslinkMaxMonoSaturated> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
|
266 <crosslinkMaxDiUnsaturated>0</crosslinkMaxDiUnsaturated> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
|
267 <crosslinkMaxDiSaturated>0</crosslinkMaxDiSaturated> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
|
268 <crosslinkModifications> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
|
269 </crosslinkModifications> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
|
270 <crosslinkFastaFiles> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
|
271 </crosslinkFastaFiles> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
|
272 <crosslinkSites> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
|
273 </crosslinkSites> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
|
274 <crosslinkNetworkFiles> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
|
275 </crosslinkNetworkFiles> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
|
276 <crosslinkMode/> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
|
277 <peakRefinement>False</peakRefinement> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
|
278 <isobaricSumOverWindow>True</isobaricSumOverWindow> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
|
279 <isobaricWeightExponent>0.75</isobaricWeightExponent> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
|
280 <diaLibraryType>0</diaLibraryType> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
|
281 <diaLibraryPaths> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
|
282 </diaLibraryPaths> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
|
283 <diaPeptidePaths> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
|
284 </diaPeptidePaths> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
|
285 <diaEvidencePaths> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
|
286 </diaEvidencePaths> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
|
287 <diaMsmsPaths> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
|
288 </diaMsmsPaths> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
|
289 <diaInitialPrecMassTolPpm>20</diaInitialPrecMassTolPpm> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
|
290 <diaInitialFragMassTolPpm>20</diaInitialFragMassTolPpm> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
|
291 <diaCorrThresholdFeatureClustering>0.85</diaCorrThresholdFeatureClustering> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
|
292 <diaPrecTolPpmFeatureClustering>2</diaPrecTolPpmFeatureClustering> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
|
293 <diaFragTolPpmFeatureClustering>2</diaFragTolPpmFeatureClustering> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
|
294 <diaScoreN>7</diaScoreN> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
|
295 <diaMinScore>1.99</diaMinScore> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
|
296 <diaXgBoostBaseScore>0.4</diaXgBoostBaseScore> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
|
297 <diaXgBoostSubSample>0.9</diaXgBoostSubSample> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
|
298 <centroidPosition>0</centroidPosition> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
|
299 <diaQuantMethod>7</diaQuantMethod> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
|
300 <diaFeatureQuantMethod>2</diaFeatureQuantMethod> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
|
301 <lfqNormType>1</lfqNormType> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
|
302 <diaTopNForQuant>10</diaTopNForQuant> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
|
303 <diaMinMsmsIntensityForQuant>0</diaMinMsmsIntensityForQuant> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
|
304 <diaTopMsmsIntensityQuantileForQuant>0.85</diaTopMsmsIntensityQuantileForQuant> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
|
305 <diaPrecursorFilterType>0</diaPrecursorFilterType> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
|
306 <diaMinFragmentOverlapScore>1</diaMinFragmentOverlapScore> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
|
307 <diaMinPrecursorScore>0.5</diaMinPrecursorScore> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
|
308 <diaMinProfileCorrelation>0</diaMinProfileCorrelation> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
|
309 <diaXgBoostMinChildWeight>9</diaXgBoostMinChildWeight> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
|
310 <diaXgBoostMaximumTreeDepth>12</diaXgBoostMaximumTreeDepth> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
|
311 <diaXgBoostEstimators>580</diaXgBoostEstimators> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
|
312 <diaXgBoostGamma>0.9</diaXgBoostGamma> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
|
313 <diaXgBoostMaxDeltaStep>3</diaXgBoostMaxDeltaStep> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
|
314 <diaGlobalMl>True</diaGlobalMl> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
|
315 <diaAdaptiveMassAccuracy>False</diaAdaptiveMassAccuracy> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
|
316 <diaMassWindowFactor>3.3</diaMassWindowFactor> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
|
317 <diaRtPrediction>False</diaRtPrediction> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
|
318 <diaRtPredictionSecondRound>False</diaRtPredictionSecondRound> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
|
319 <diaNoMl>False</diaNoMl> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
|
320 <diaPermuteRt>False</diaPermuteRt> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
|
321 <diaPermuteCcs>False</diaPermuteCcs> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
|
322 <diaBackgroundSubtraction>False</diaBackgroundSubtraction> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
|
323 <diaBackgroundSubtractionQuantile>0.5</diaBackgroundSubtractionQuantile> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
|
324 <diaBackgroundSubtractionFactor>4</diaBackgroundSubtractionFactor> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
|
325 <diaLfqWeightedMedian>False</diaLfqWeightedMedian> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
|
326 </parameterGroup> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
|
327 </parameterGroups> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
|
328 <msmsParamsArray> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
|
329 <msmsParams> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
|
330 <Name>FTMS</Name> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
|
331 <MatchTolerance>20</MatchTolerance> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
|
332 <MatchToleranceInPpm>True</MatchToleranceInPpm> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
|
333 <DeisotopeTolerance>7</DeisotopeTolerance> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
|
334 <DeisotopeToleranceInPpm>True</DeisotopeToleranceInPpm> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
|
335 <DeNovoTolerance>10</DeNovoTolerance> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
|
336 <DeNovoToleranceInPpm>True</DeNovoToleranceInPpm> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
|
337 <Deisotope>True</Deisotope> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
|
338 <Topx>12</Topx> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
|
339 <TopxInterval>100</TopxInterval> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
|
340 <HigherCharges>True</HigherCharges> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
|
341 <IncludeWater>True</IncludeWater> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
|
342 <IncludeAmmonia>True</IncludeAmmonia> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
|
343 <DependentLosses>True</DependentLosses> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
|
344 <Recalibration>False</Recalibration> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
|
345 </msmsParams> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
|
346 <msmsParams> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
|
347 <Name>ITMS</Name> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
|
348 <MatchTolerance>0.5</MatchTolerance> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
|
349 <MatchToleranceInPpm>False</MatchToleranceInPpm> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
|
350 <DeisotopeTolerance>0.15</DeisotopeTolerance> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
|
351 <DeisotopeToleranceInPpm>False</DeisotopeToleranceInPpm> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
|
352 <DeNovoTolerance>0.25</DeNovoTolerance> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
|
353 <DeNovoToleranceInPpm>False</DeNovoToleranceInPpm> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
|
354 <Deisotope>False</Deisotope> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
|
355 <Topx>8</Topx> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
|
356 <TopxInterval>100</TopxInterval> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
|
357 <HigherCharges>True</HigherCharges> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
|
358 <IncludeWater>True</IncludeWater> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
|
359 <IncludeAmmonia>True</IncludeAmmonia> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
|
360 <DependentLosses>True</DependentLosses> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
|
361 <Recalibration>False</Recalibration> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
|
362 </msmsParams> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
|
363 <msmsParams> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
|
364 <Name>TOF</Name> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
|
365 <MatchTolerance>40</MatchTolerance> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
|
366 <MatchToleranceInPpm>True</MatchToleranceInPpm> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
|
367 <DeisotopeTolerance>0.01</DeisotopeTolerance> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
|
368 <DeisotopeToleranceInPpm>False</DeisotopeToleranceInPpm> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
|
369 <DeNovoTolerance>0.02</DeNovoTolerance> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
|
370 <DeNovoToleranceInPpm>False</DeNovoToleranceInPpm> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
|
371 <Deisotope>True</Deisotope> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
|
372 <Topx>10</Topx> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
|
373 <TopxInterval>100</TopxInterval> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
|
374 <HigherCharges>True</HigherCharges> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
|
375 <IncludeWater>True</IncludeWater> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
|
376 <IncludeAmmonia>True</IncludeAmmonia> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
|
377 <DependentLosses>True</DependentLosses> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
|
378 <Recalibration>False</Recalibration> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
|
379 </msmsParams> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
|
380 <msmsParams> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
|
381 <Name>Unknown</Name> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
|
382 <MatchTolerance>20</MatchTolerance> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
|
383 <MatchToleranceInPpm>True</MatchToleranceInPpm> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
|
384 <DeisotopeTolerance>7</DeisotopeTolerance> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
|
385 <DeisotopeToleranceInPpm>True</DeisotopeToleranceInPpm> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
|
386 <DeNovoTolerance>10</DeNovoTolerance> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
|
387 <DeNovoToleranceInPpm>True</DeNovoToleranceInPpm> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
|
388 <Deisotope>True</Deisotope> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
|
389 <Topx>12</Topx> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
|
390 <TopxInterval>100</TopxInterval> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
|
391 <HigherCharges>True</HigherCharges> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
|
392 <IncludeWater>True</IncludeWater> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
|
393 <IncludeAmmonia>True</IncludeAmmonia> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
|
394 <DependentLosses>True</DependentLosses> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
|
395 <Recalibration>False</Recalibration> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
|
396 </msmsParams> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
|
397 </msmsParamsArray> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
|
398 <fragmentationParamsArray> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
|
399 <fragmentationParams> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
|
400 <Name>CID</Name> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
|
401 <Connected>False</Connected> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
|
402 <ConnectedScore0>1</ConnectedScore0> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
|
403 <ConnectedScore1>1</ConnectedScore1> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
|
404 <ConnectedScore2>1</ConnectedScore2> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
|
405 <InternalFragments>False</InternalFragments> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
|
406 <InternalFragmentWeight>1</InternalFragmentWeight> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
|
407 <InternalFragmentAas>KRH</InternalFragmentAas> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
|
408 </fragmentationParams> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
|
409 <fragmentationParams> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
|
410 <Name>HCD</Name> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
|
411 <Connected>False</Connected> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
|
412 <ConnectedScore0>1</ConnectedScore0> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
|
413 <ConnectedScore1>1</ConnectedScore1> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
|
414 <ConnectedScore2>1</ConnectedScore2> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
|
415 <InternalFragments>False</InternalFragments> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
|
416 <InternalFragmentWeight>1</InternalFragmentWeight> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
|
417 <InternalFragmentAas>KRH</InternalFragmentAas> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
|
418 </fragmentationParams> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
|
419 <fragmentationParams> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
|
420 <Name>ETD</Name> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
|
421 <Connected>False</Connected> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
|
422 <ConnectedScore0>1</ConnectedScore0> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
|
423 <ConnectedScore1>1</ConnectedScore1> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
|
424 <ConnectedScore2>1</ConnectedScore2> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
|
425 <InternalFragments>False</InternalFragments> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
|
426 <InternalFragmentWeight>1</InternalFragmentWeight> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
|
427 <InternalFragmentAas>KRH</InternalFragmentAas> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
|
428 </fragmentationParams> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
|
429 <fragmentationParams> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
|
430 <Name>PQD</Name> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
|
431 <Connected>False</Connected> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
|
432 <ConnectedScore0>1</ConnectedScore0> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
|
433 <ConnectedScore1>1</ConnectedScore1> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
|
434 <ConnectedScore2>1</ConnectedScore2> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
|
435 <InternalFragments>False</InternalFragments> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
|
436 <InternalFragmentWeight>1</InternalFragmentWeight> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
|
437 <InternalFragmentAas>KRH</InternalFragmentAas> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
|
438 </fragmentationParams> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
|
439 <fragmentationParams> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
|
440 <Name>ETHCD</Name> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
|
441 <Connected>False</Connected> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
|
442 <ConnectedScore0>1</ConnectedScore0> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
|
443 <ConnectedScore1>1</ConnectedScore1> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
|
444 <ConnectedScore2>1</ConnectedScore2> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
|
445 <InternalFragments>False</InternalFragments> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
|
446 <InternalFragmentWeight>1</InternalFragmentWeight> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
|
447 <InternalFragmentAas>KRH</InternalFragmentAas> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
|
448 </fragmentationParams> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
|
449 <fragmentationParams> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
|
450 <Name>ETCID</Name> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
|
451 <Connected>False</Connected> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
|
452 <ConnectedScore0>1</ConnectedScore0> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
|
453 <ConnectedScore1>1</ConnectedScore1> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
|
454 <ConnectedScore2>1</ConnectedScore2> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
|
455 <InternalFragments>False</InternalFragments> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
|
456 <InternalFragmentWeight>1</InternalFragmentWeight> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
|
457 <InternalFragmentAas>KRH</InternalFragmentAas> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
|
458 </fragmentationParams> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
|
459 <fragmentationParams> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
|
460 <Name>UVPD</Name> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
|
461 <Connected>False</Connected> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
|
462 <ConnectedScore0>1</ConnectedScore0> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
|
463 <ConnectedScore1>1</ConnectedScore1> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
|
464 <ConnectedScore2>1</ConnectedScore2> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
|
465 <InternalFragments>False</InternalFragments> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
|
466 <InternalFragmentWeight>1</InternalFragmentWeight> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
|
467 <InternalFragmentAas>KRH</InternalFragmentAas> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
|
468 </fragmentationParams> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
|
469 <fragmentationParams> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
|
470 <Name>Unknown</Name> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
|
471 <Connected>False</Connected> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
|
472 <ConnectedScore0>1</ConnectedScore0> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
|
473 <ConnectedScore1>1</ConnectedScore1> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
|
474 <ConnectedScore2>1</ConnectedScore2> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
|
475 <InternalFragments>False</InternalFragments> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
|
476 <InternalFragmentWeight>1</InternalFragmentWeight> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
|
477 <InternalFragmentAas>KRH</InternalFragmentAas> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
|
478 </fragmentationParams> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
|
479 </fragmentationParamsArray> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
|
480 </MaxQuantParams> |
97a7f34fcb6a
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 641b1d3af3b589a861cde2dc2f8803c9b79df7be"
galaxyp
parents:
diff
changeset
|
481 |