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annotate README.md @ 0:d4b6c9eae635 draft

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Initial commit.
author galaxyp
date Fri, 10 May 2013 17:22:51 -0400
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1 Tool wrapper for MaxQuant.
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2
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3 MaxQuant is a Windows only program and so you will likely need to
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4 deploy this tool to run on a remote Windows system via the LWR
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5 (https://lwr.readthedocs.org).
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6
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7 The sample mods file maxquant_mods.loc.sample corresponds to the
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8 default modifications MaxQuant is configured with. The Galaxy-P
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9 project uses a MaxQuant that has been extended with all of Unimod. To
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10 modify MaxQuant in this fashion replace MaxQuant's modifications.xml
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11 file with the extended_modifications.xml distributed with this tool
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12 and configure Galaxy with the maxquant_mods.loc.sample.extended loc
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13 file.# Obtaining Tools
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14
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15 Repositories for all Galaxy-P tools can be found at
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16 https:/bitbucket.org/galaxyp/.
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17
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18 # Contact
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19
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20 Please send suggestions for improvements and bug reports to
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21 jmchilton@gmail.com.
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22
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23 # License
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24
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25 All Galaxy-P tools are licensed under the Apache License Version 2.0
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26 unless otherwise documented.
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27
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28 # Tool Versioning
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29
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30 Galaxy-P tools will have versions of the form X.Y.Z. Versions
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31 differing only after the second decimal should be completely
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32 compatible with each other. Breaking changes should result in an
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33 increment of the number before and/or after the first decimal. All
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34 tools of version less than 1.0.0 should be considered beta.