comparison macros.xml @ 12:0839f84def5e draft

"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit d0dc9303d449c63a6ffe8fbfe195951d5db9cb89"

11:d72c96ad9a16

<?xml version="1.0" ?>
<macros>
    <token name="@VERSION@">1.6.10.43</token>
    <token name="@VERSION_PTXQC@">1.0.9</token>
    <token name="@SUBSTITUTION_RX@">[^\w\-\s\.]</token>
    <token name="@TMT2PLEX@">
                    - [TMT2plex-Lys126,TMT2plex-Nter126,0,0,0,0,True]
                    - [TMT2plex-Lys127,TMT2plex-Nter127,0,0,0,0,True]
    </token>

                    - [TMT10plex-Lys131N,TMT10plex-Nter131N,0,0,0,0,True]
    </token>
    <token name="@TMT11PLEX@">
                    @TMT10PLEX@
                    - [TMT11plex-Lys131C,TMT11plex-Nter131C,0,0,0,0,True]
    </token>
    <token name="@ITRAQ4PLEX@">
                    - [iTRAQ4plex-Lys114,iTRAQ4plex-Nter114,0,0,0,0,False]
                    - [iTRAQ4plex-Lys115,iTRAQ4plex-Nter115,0,0,0,0,False]
                    - [iTRAQ4plex-Lys116,iTRAQ4plex-Nter116,0,0,0,0,False]

        <expand macro="mod_option" value="Tyr-&gt;CamCys"/>
        <expand macro="mod_option" value="Val-&gt;CamCys"/>
        <expand macro="mod_option" value="Xle-&gt;CamCys"/>
        <expand macro="mod_option" value="Cysteinyl"/>
        <expand macro="mod_option" value="Cysteinyl - carbamidomethyl"/>
    </xml>
    <xml name="label">
        <expand macro="mod_option" value="Arg6"/>
        <expand macro="mod_option" value="Arg10"/>
        <expand macro="mod_option" value="Lys4"/>

        <expand macro="mod_option" value="iodoTMT6plex-Cys127"/>
        <expand macro="mod_option" value="iodoTMT6plex-Cys128"/>
        <expand macro="mod_option" value="iodoTMT6plex-Cys129"/>
        <expand macro="mod_option" value="iodoTMT6plex-Cys130"/>
        <expand macro="mod_option" value="iodoTMT6plex-Cys131"/>
    </xml>
    <xml name="citations">
        <citations>
            <citation type="bibtex">
                @article{cox2008maxquant,

12:0839f84def5e

<?xml version="1.0" ?>
<macros>
    <token name="@VERSION@">1.6.17.0</token>
    <token name="@VERSION_SUFFIX@">0</token>
    <token name="@VERSION_PTXQC@">1.0.10</token>
    <token name="@SUBSTITUTION_RX@">[^\w\-\s\.]</token>
    <token name="@TMT2PLEX@">
                    - [TMT2plex-Lys126,TMT2plex-Nter126,0,0,0,0,True]
                    - [TMT2plex-Lys127,TMT2plex-Nter127,0,0,0,0,True]
    </token>

                    - [TMT10plex-Lys131N,TMT10plex-Nter131N,0,0,0,0,True]
    </token>
    <token name="@TMT11PLEX@">
                    @TMT10PLEX@
                    - [TMT11plex-Lys131C,TMT11plex-Nter131C,0,0,0,0,True]
    </token>
    <token name="@TMTPRO16PLEX@">
                    - [TMTpro16plex-Lys127N,TMTpro16plex-Nter127N,0,0,0,0,True]
                    - [TMTpro16plex-Lys127C,TMTpro16plex-Nter127C,0,0,0,0,True]
                    - [TMTpro16plex-Lys128N,TMTpro16plex-Nter128N,0,0,0,0,True]
                    - [TMTpro16plex-Lys128C,TMTpro16plex-Nter128C,0,0,0,0,True]
                    - [TMTpro16plex-Lys129N,TMTpro16plex-Nter129N,0,0,0,0,True]
                    - [TMTpro16plex-Lys129C,TMTpro16plex-Nter129C,0,0,0,0,True]
                    - [TMTpro16plex-Lys130N,TMTpro16plex-Nter130N,0,0,0,0,True]
                    - [TMTpro16plex-Lys130C,TMTpro16plex-Nter130C,0,0,0,0,True]
                    - [TMTpro16plex-Lys131N,TMTpro16plex-Nter131N,0,0,0,0,True]
                    - [TMTpro16plex-Lys131C,TMTpro16plex-Nter131C,0,0,0,0,True]
                    - [TMTpro16plex-Lys132N,TMTpro16plex-Nter132N,0,0,0,0,True]
                    - [TMTpro16plex-Lys132C,TMTpro16plex-Nter132C,0,0,0,0,True]
                    - [TMTpro16plex-Lys133N,TMTpro16plex-Nter133N,0,0,0,0,True]
                    - [TMTpro16plex-Lys133C,TMTpro16plex-Nter133C,0,0,0,0,True]
                    - [TMTpro16plex-Lys134N,TMTpro16plex-Nter134N,0,0,0,0,True]
                    - [TMTpro16plex-Lys126C,TMTpro16plex-Nter126C,0,0,0,0,True]
    </token>
    <token name="@ITRAQ4PLEX@">
                    - [iTRAQ4plex-Lys114,iTRAQ4plex-Nter114,0,0,0,0,False]
                    - [iTRAQ4plex-Lys115,iTRAQ4plex-Nter115,0,0,0,0,False]
                    - [iTRAQ4plex-Lys116,iTRAQ4plex-Nter116,0,0,0,0,False]

        <expand macro="mod_option" value="Tyr-&gt;CamCys"/>
        <expand macro="mod_option" value="Val-&gt;CamCys"/>
        <expand macro="mod_option" value="Xle-&gt;CamCys"/>
        <expand macro="mod_option" value="Cysteinyl"/>
        <expand macro="mod_option" value="Cysteinyl - carbamidomethyl"/>
        <expand macro="mod_option" value="Oxidation (MP)"/>
        <expand macro="mod_option" value="Propionamide (C)"/>
        <expand macro="mod_option" value="Propionamide (K)"/>
        <expand macro="mod_option" value="Propionamide (N-term)"/>
    </xml>
    <xml name="label">
        <expand macro="mod_option" value="Arg6"/>
        <expand macro="mod_option" value="Arg10"/>
        <expand macro="mod_option" value="Lys4"/>

        <expand macro="mod_option" value="iodoTMT6plex-Cys127"/>
        <expand macro="mod_option" value="iodoTMT6plex-Cys128"/>
        <expand macro="mod_option" value="iodoTMT6plex-Cys129"/>
        <expand macro="mod_option" value="iodoTMT6plex-Cys130"/>
        <expand macro="mod_option" value="iodoTMT6plex-Cys131"/>
        <expand macro="mod_option" value="TMTpro16plex-Nter126C"/>
        <expand macro="mod_option" value="TMTpro16plex-Nter127N"/>
        <expand macro="mod_option" value="TMTpro16plex-Nter127C"/>
        <expand macro="mod_option" value="TMTpro16plex-Nter128N"/>
        <expand macro="mod_option" value="TMTpro16plex-Nter128C"/>
        <expand macro="mod_option" value="TMTpro16plex-Nter129N"/>
        <expand macro="mod_option" value="TMTpro16plex-Nter129C"/>
        <expand macro="mod_option" value="TMTpro16plex-Nter130N"/>
        <expand macro="mod_option" value="TMTpro16plex-Nter130C"/>
        <expand macro="mod_option" value="TMTpro16plex-Nter131N"/>
        <expand macro="mod_option" value="TMTpro16plex-Nter131C"/>
        <expand macro="mod_option" value="TMTpro16plex-Nter132N"/>
        <expand macro="mod_option" value="TMTpro16plex-Nter132C"/>
        <expand macro="mod_option" value="TMTpro16plex-Nter133N"/>
        <expand macro="mod_option" value="TMTpro16plex-Nter133C"/>
        <expand macro="mod_option" value="TMTpro16plex-Nter134N"/>
        <expand macro="mod_option" value="TMTpro16plex-Lys126C"/>
        <expand macro="mod_option" value="TMTpro16plex-Lys127N"/>
        <expand macro="mod_option" value="TMTpro16plex-Lys127C"/>
        <expand macro="mod_option" value="TMTpro16plex-Lys128N"/>
        <expand macro="mod_option" value="TMTpro16plex-Lys128C"/>
        <expand macro="mod_option" value="TMTpro16plex-Lys129N"/>
        <expand macro="mod_option" value="TMTpro16plex-Lys129C"/>
        <expand macro="mod_option" value="TMTpro16plex-Lys130N"/>
        <expand macro="mod_option" value="TMTpro16plex-Lys130C"/>
        <expand macro="mod_option" value="TMTpro16plex-Lys131N"/>
        <expand macro="mod_option" value="TMTpro16plex-Lys131C"/>
        <expand macro="mod_option" value="TMTpro16plex-Lys132N"/>
        <expand macro="mod_option" value="TMTpro16plex-Lys132C"/>
        <expand macro="mod_option" value="TMTpro16plex-Lys133N"/>
        <expand macro="mod_option" value="TMTpro16plex-Lys133C"/>
        <expand macro="mod_option" value="TMTpro16plex-Lys134N"/>
    </xml>
    <xml name="citations">
        <citations>
            <citation type="bibtex">
                @article{cox2008maxquant,