Mercurial > repos > galaxyp > maxquant
comparison test-data/05/config.yml @ 10:f522c08e900c draft
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 63e45d43f403514ab0ceafaf441d761866f1eb7e"
| author | galaxyp |
|---|---|
| date | Fri, 12 Mar 2021 08:41:06 +0000 |
| parents | |
| children | 0839f84def5e |
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| 9:37d669de2828 | 10:f522c08e900c |
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| 1 | |
| 2 fastaFiles: [/tmp/tmp0wswhy4o/files/4/7/7/dataset_4770959a-66d4-405f-a5b5-48d25389063a.dat] | |
| 3 parseRules: | |
| 4 identifierParseRule: '^>.*\|(.*)\|.*$' | |
| 5 descriptionParseRule: '^>.*\|.*\|[^ ]+ (.*) OS.*$' | |
| 6 minUniquePeptides: 1 | |
| 7 minPepLen: 7 | |
| 8 maxPeptideMass: 4600 | |
| 9 calcPeakProperties: False | |
| 10 writeMzTab: False | |
| 11 ibaq: True | |
| 12 ibaqLogFit: False | |
| 13 separateLfq: False | |
| 14 lfqStabilizeLargeRatios: True | |
| 15 lfqRequireMsms: True | |
| 16 advancedSiteIntensities: True | |
| 17 matchBetweenRuns: True | |
| 18 matchingTimeWindow: 0.7 | |
| 19 matchingIonMobilityWindow: 0.05 | |
| 20 alignmentTimeWindow: 20 | |
| 21 alignmentIonMobilityWindow: 1 | |
| 22 matchUnidentifiedFeatures: False | |
| 23 includeContaminants: True | |
| 24 minPeptideLengthForUnspecificSearch: 8 | |
| 25 maxPeptideLengthForUnspecificSearch: 25 | |
| 26 decoyMode: revert | |
| 27 peptideFdr: 0.01 | |
| 28 proteinFdr: 0.01 | |
| 29 quantMode: 1 | |
| 30 restrictProteinQuantification: True | |
| 31 restrictMods: [Oxidation (M),Acetyl (Protein N-term)] | |
| 32 useCounterparts: True | |
| 33 paramGroups: | |
| 34 - files: ['BSA_min_22.mzxml'] | |
| 35 maxMissedCleavages: 1 | |
| 36 fixedModifications: [Carbamidomethyl (C)] | |
| 37 variableModifications: [Oxidation (M)] | |
| 38 enzymes: [Trypsin/P] | |
| 39 enzymeMode: 0 | |
| 40 lfqMode: 1 | |
| 41 lfqSkipNorm: True | |
| 42 lfqMinEdgesPerNode: 3 | |
| 43 lfqAvEdgesPerNode: 6 | |
| 44 lfqMinRatioCount: 2 | |
| 45 |