Mercurial > repos > galaxyp > maxquant

diff test-data/01/combined/txt/evidence.txt @ 12:0839f84def5e draft

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"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit d0dc9303d449c63a6ffe8fbfe195951d5db9cb89"
author galaxyp
date Sun, 20 Jun 2021 16:37:41 +0000
parents dcd39bcc7481
children
line wrap: on
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--- a/test-data/01/combined/txt/evidence.txt	Tue Jun 15 07:55:59 2021 +0000
+++ b/test-data/01/combined/txt/evidence.txt	Sun Jun 20 16:37:41 2021 +0000
@@ -1,9 +1,7 @@
-Sequence	Length	Modifications	Modified sequence	Oxidation (M) Probabilities	Oxidation (M) Score Diffs	Oxidation (M)	Missed cleavages	Proteins	Leading proteins	Leading razor protein	Type	Raw file	Experiment	MS/MS m/z	Charge	m/z	Mass	Resolution	Uncalibrated - Calibrated m/z [ppm]	Uncalibrated - Calibrated m/z [Da]	Mass error [ppm]	Mass error [Da]	Uncalibrated mass error [ppm]	Uncalibrated mass error [Da]	Max intensity m/z 0	Retention time	Retention length	Calibrated retention time	Calibrated retention time start	Calibrated retention time finish	Retention time calibration	Match time difference	Match m/z difference	Match q-value	Match score	Number of data points	Number of scans	Number of isotopic peaks	PIF	Fraction of total spectrum	Base peak fraction	PEP	MS/MS count	MS/MS scan number	Score	Delta score	Combinatorics	Intensity	Reporter PIF	Reporter fraction	Reverse	Potential contaminant	id	Protein group IDs	Peptide ID	Mod. peptide ID	MS/MS IDs	Best MS/MS	Oxidation (M) site IDs
-DSFDIIK	7	Unmodified	_DSFDIIK_			0	0	CON__ENSEMBL:ENSBTAP00000016046	CON__ENSEMBL:ENSBTAP00000016046	CON__ENSEMBL:ENSBTAP00000016046	MULTI-MSMS	BSA_min_23	BSA_min_23.mzXML	419.221313476563	2	419.221268	836.427984	NaN	0	0	0.54276	0.00022754	0.54276	0.00022754	419.22139467134	0.58669	0.13742	0.58669	0.46121	0.59862	0					11	4	3	0	0	0	8.9583E-05	1	96	0	0	1	768320				+	0	2	0	0	0	0	
-LLESEECR	8	Unmodified	_LLESEECR_			0	0	CON__Q14CN4-1;CON__Q3SY84;CON__Q9R0H5	CON__Q14CN4-1	CON__Q14CN4-1	MSMS	BSA_min_23	BSA_min_23.mzXML	518.238220214844	2	518.242406	1034.47026	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	0.50957	1	0.50957	0.0095717	1.0096	0								0	0	0	0.010121	1	86	1.6313	1.6313	1					+	1	6	1	1	1	1	
-LVTDLTK	7	Unmodified	_LVTDLTK_			0	0	CON__P02769;bsa;CON__P02768-1	CON__P02769	CON__P02769	MSMS	BSA_min_23	BSA_min_23.mzXML	395.239288330078	2	395.239461	788.46437	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	0.010013	1	0.010013	-0.48999	0.51001	0								0	0	0	0.005963	1	2	0	0	1					+	2	0	2	2	2	2	
-QLELEKQLEK	10	Unmodified	_QLELEKQLEK_			0	1	CON__ENSEMBL:ENSBTAP00000001528	CON__ENSEMBL:ENSBTAP00000001528	CON__ENSEMBL:ENSBTAP00000001528	MULTI-MSMS	BSA_min_23	BSA_min_23.mzXML	629.358581542969	2	629.356085	1256.69762	NaN	0	0	0.76901	0.00048398	0.76901	0.00048398	629.356557471474	0.3521	0.47559	0.3521	0.12303	0.59862	0					33	14	3	0	0	0	0.0003393	2	52	0	0	1	84871				+	3	1	3	3	3;4	3	
-QLELEKQLEK	10	Unmodified	_QLELEKQLEK_			0	1	CON__ENSEMBL:ENSBTAP00000001528	CON__ENSEMBL:ENSBTAP00000001528	CON__ENSEMBL:ENSBTAP00000001528	MULTI-SECPEP	BSA_min_23	BSA_min_23.mzXML	419.221313476563	3	419.906482	1256.69762	NaN	0	0	0.052788	2.2166E-05	0.052788	2.2166E-05	419.9067499241	0.32847	0.47559	0.32847	0.12303	0.59862	0					25	14	2	0	0	0	0.015457	1	96	0	0	1	57554				+	4	1	3	3	5	5	
-SLSAIRER	8	Unmodified	_SLSAIRER_			0	1	CON__Q03247	CON__Q03247	CON__Q03247	MULTI-SECPEP	BSA_min_23	BSA_min_23.mzXML	465.766693115234	2	466.269616	930.524678	NaN	0	0	-3.0904	-0.0014409	-3.0904	-0.0014409	466.26850803291	0.10674	0.17216	0.10674	-0.014552	0.15761	0					6	4	2	0	0	0	0.015457	1	17	0	0	1	33499				+	5	5	4	4	6	6	
-SQTSHRGYSASSAR	14	Unmodified	_SQTSHRGYSASSAR_			0	1	CON__P50446	CON__P50446	CON__P50446	MULTI-MSMS	BSA_min_23	BSA_min_23.mzXML	747.855651855469	2	747.855835	1493.69712	NaN	0	0	0.34543	0.00025833	0.34543	0.00025833	747.856213318885	0.29902	0.26735	0.29902	0.19386	0.46121	0					11	7	2	0	0	0	0.0091697	1	53	0	0	1	59701				+	6	4	5	5	7	7	
-TLGPWGQR	8	Unmodified	_TLGPWGQR_			0	0	CON__ENSEMBL:ENSBTAP00000018574	CON__ENSEMBL:ENSBTAP00000018574	CON__ENSEMBL:ENSBTAP00000018574	MULTI-MSMS	BSA_min_23	BSA_min_23.mzXML	457.746032714844	2	457.745776	913.477	NaN	0	0	-0.28456	-0.00013026	-0.28456	-0.00013026	457.745456355006	0.4547	0.40477	0.4547	0.19386	0.59862	-5.5511E-17					18	12	2	0	0	0	0.00018307	1	72	0	0	1	61894				+	7	3	6	6	8	8	
+Sequence	Length	Modifications	Modified sequence	Oxidation (M) Probabilities	Oxidation (M) Score Diffs	Oxidation (M)	Missed cleavages	Proteins	Leading proteins	Leading razor protein	Type	Raw file	Experiment	MS/MS m/z	Charge	m/z	Mass	Uncalibrated - Calibrated m/z [ppm]	Uncalibrated - Calibrated m/z [Da]	Mass error [ppm]	Mass error [Da]	Uncalibrated mass error [ppm]	Uncalibrated mass error [Da]	Max intensity m/z 0	Retention time	Retention length	Calibrated retention time	Calibrated retention time start	Calibrated retention time finish	Retention time calibration	Match time difference	Match m/z difference	Match q-value	Match score	Number of data points	Number of scans	Number of isotopic peaks	PIF	Fraction of total spectrum	Base peak fraction	PEP	MS/MS count	MS/MS scan number	Score	Delta score	Combinatorics	Intensity	Reverse	Potential contaminant	id	Protein group IDs	Peptide ID	Mod. peptide ID	MS/MS IDs	Best MS/MS	Oxidation (M) site IDs	Taxonomy IDs
+DSFDIIK	7	Unmodified	_DSFDIIK_			0	0	CON__ENSEMBL:ENSBTAP00000016046	CON__ENSEMBL:ENSBTAP00000016046	CON__ENSEMBL:ENSBTAP00000016046	MULTI-MSMS	BSA_min_23	BSA_min_23.mzXML	419.221313476563	2	419.221268	836.427984	0	0	0.51923	0.00021767	0.51923	0.00021767	419.22139467134	0.58669	0.13742	0.58669	0.46121	0.59862	0					11	4	3	0	0	0	0.010549	1	96	0	0	1	769840		+	0	1	0	0	0	0		
+LLESEECR	8	Unmodified	_LLESEECR_			0	0	CON__Q14CN4-1;CON__Q3SY84;CON__Q9R0H5	CON__Q14CN4-1	CON__Q14CN4-1	MSMS	BSA_min_23	BSA_min_23.mzXML	518.238220214844	2	518.242406	1034.47026	NaN	NaN	NaN	NaN	NaN	NaN	NaN	0.50957	1	0.50957	0.0095717	1.0096	0								0	0	0	0.0075205	1	86	1.6313	1.6313	1			+	1	5	1	1	1	1		
+LVTDLTK	7	Unmodified	_LVTDLTK_			0	0	bsa;CON__P02769;CON__P02768-1	bsa	bsa	MSMS	BSA_min_23	BSA_min_23.mzXML	395.239288330078	2	395.239461	788.46437	NaN	NaN	NaN	NaN	NaN	NaN	NaN	0.010013	1	0.010013	-0.48999	0.51001	0								0	0	0	0.0046553	1	2	0	0	1			+	2	3	2	2	2	2		
+QLELEKQLEK	10	Unmodified	_QLELEKQLEK_			0	1	CON__ENSEMBL:ENSBTAP00000001528	CON__ENSEMBL:ENSBTAP00000001528	CON__ENSEMBL:ENSBTAP00000001528	MULTI-SECPEP	BSA_min_23	BSA_min_23.mzXML	419.221313476563	3	419.906482	1256.69762	0	0	0.05222	2.1927E-05	0.05222	2.1927E-05	419.9067499241	0.32847	0.47559	0.32847	0.12303	0.59862	0					25	14	2	0	0	0	0.011549	1	96	0	0	1	57896		+	3	0	3	3	3	3		
+SLSAIRER	8	Unmodified	_SLSAIRER_			0	1	CON__Q03247	CON__Q03247	CON__Q03247	MULTI-SECPEP	BSA_min_23	BSA_min_23.mzXML	465.766693115234	2	466.269616	930.524678	0	0	-3.0889	-0.0014403	-3.0889	-0.0014403	466.26850803291	0.10674	0.17216	0.10674	-0.014552	0.15761	0					6	4	2	0	0	0	0.011549	1	17	0	0	1	33623		+	4	4	4	4	4	4		
+TLGPWGQR	8	Unmodified	_TLGPWGQR_			0	0	CON__ENSEMBL:ENSBTAP00000018574	CON__ENSEMBL:ENSBTAP00000018574	CON__ENSEMBL:ENSBTAP00000018574	MULTI-MSMS	BSA_min_23	BSA_min_23.mzXML	457.746032714844	2	457.745776	913.477	0	0	-0.28247	-0.0001293	-0.28247	-0.0001293	457.745456355006	0.4547	0.40477	0.4547	0.19386	0.59862	-5.5511E-17					18	12	2	0	0	0	0.01108	1	72	0	0	1	62116		+	5	2	5	5	5	5