Mercurial > repos > galaxyp > maxquant

diff test-data/01/combined/txt/proteinGroups.txt @ 12:0839f84def5e draft

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"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit d0dc9303d449c63a6ffe8fbfe195951d5db9cb89"
author galaxyp
date Sun, 20 Jun 2021 16:37:41 +0000
parents dcd39bcc7481
children
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--- a/test-data/01/combined/txt/proteinGroups.txt	Tue Jun 15 07:55:59 2021 +0000
+++ b/test-data/01/combined/txt/proteinGroups.txt	Sun Jun 20 16:37:41 2021 +0000
@@ -1,8 +1,7 @@
-Protein IDs	Majority protein IDs	Peptide counts (all)	Peptide counts (razor+unique)	Peptide counts (unique)	Fasta headers	Number of proteins	Peptides	Razor + unique peptides	Unique peptides	Peptides BSA_min_23.mzXML	Razor + unique peptides BSA_min_23.mzXML	Unique peptides BSA_min_23.mzXML	Sequence coverage [%]	Unique + razor sequence coverage [%]	Unique sequence coverage [%]	Mol. weight [kDa]	Sequence length	Sequence lengths	Q-value	Score	Sequence coverage BSA_min_23.mzXML [%]	Intensity	Intensity BSA_min_23.mzXML	MS/MS count	Only identified by site	Reverse	Potential contaminant	id	Peptide IDs	Peptide is razor	Mod. peptide IDs	Evidence IDs	MS/MS IDs	Best MS/MS	Oxidation (M) site IDs	Oxidation (M) site positions
-CON__P02769;bsa;CON__P02768-1	CON__P02769;bsa;CON__P02768-1	1;1;1	1;1;1	1;1;1	;bsa sp|P02769|ALBU_BOVIN Serum albumin OS=Bos taurus OX=9913 GN=ALB PE=1 SV=4;	3	1	1	1	1	1	1	1.2	1.2	1.2	69.293	607	607;607;609	0	6.2245	1.2	0	0	1			+	0	2	True	2	2	2	2		
-CON__ENSEMBL:ENSBTAP00000001528	CON__ENSEMBL:ENSBTAP00000001528	1	1	1		1	1	1	1	1	1	1	0.8	0.8	0.8	137.98	1222	1222	0	7.4694	0.8	142430	142430	2			+	1	3	True	3	3;4	3;4;5	3		
-CON__ENSEMBL:ENSBTAP00000016046	CON__ENSEMBL:ENSBTAP00000016046	1	1	1		1	1	1	1	1	1	1	1	1	1	77.456	706	706	0	8.0478	1	768320	768320	1			+	2	0	True	0	0	0	0		
-CON__ENSEMBL:ENSBTAP00000018574	CON__ENSEMBL:ENSBTAP00000018574	1	1	1		1	1	1	1	1	1	1	1.6	1.6	1.6	55.207	496	496	0	7.7374	1.6	61894	61894	1			+	3	6	True	6	7	8	8		
-CON__P50446	CON__P50446	1	1	1		1	1	1	1	1	1	1	2.5	2.5	2.5	59.334	553	553	0	6.0376	2.5	59701	59701	1			+	4	5	True	5	6	7	7		
-CON__Q03247	CON__Q03247	1	1	1		1	1	1	1	1	1	1	2.5	2.5	2.5	35.979	316	316	0	5.8109	2.5	33499	33499	0			+	5	4	True	4	5	6	6		
-CON__Q14CN4-1;CON__Q3SY84;CON__Q9R0H5	CON__Q14CN4-1;CON__Q3SY84;CON__Q9R0H5	1;1;1	1;1;1	1;1;1	;;	3	1	1	1	1	1	1	1.6	1.6	1.6	55.877	511	511;523;524	0	5.9948	1.6	0	0	1			+	6	1	True	1	1	1	1		
+Protein IDs	Majority protein IDs	Peptide counts (all)	Peptide counts (razor+unique)	Peptide counts (unique)	Fasta headers	Number of proteins	Peptides	Razor + unique peptides	Unique peptides	Peptides BSA_min_23.mzXML	Razor + unique peptides BSA_min_23.mzXML	Unique peptides BSA_min_23.mzXML	Sequence coverage [%]	Unique + razor sequence coverage [%]	Unique sequence coverage [%]	Mol. weight [kDa]	Sequence length	Sequence lengths	Q-value	Score	Sequence coverage BSA_min_23.mzXML [%]	Intensity	Intensity BSA_min_23.mzXML	MS/MS count	Only identified by site	Reverse	Potential contaminant	id	Peptide IDs	Peptide is razor	Mod. peptide IDs	Evidence IDs	MS/MS IDs	Best MS/MS	Oxidation (M) site IDs	Oxidation (M) site positions	Taxonomy IDs
+CON__ENSEMBL:ENSBTAP00000001528	CON__ENSEMBL:ENSBTAP00000001528	1	1	1		1	1	1	1	1	1	1	0.8	0.8	0.8	137.98	1222	1222	0	5.9375	0.8	57896	57896	0			+	0	3	True	3	3	3	3			-1
+CON__ENSEMBL:ENSBTAP00000016046	CON__ENSEMBL:ENSBTAP00000016046	1	1	1		1	1	1	1	1	1	1	1	1	1	77.456	706	706	0	5.9768	1	769840	769840	1			+	1	0	True	0	0	0	0			-1
+CON__ENSEMBL:ENSBTAP00000018574	CON__ENSEMBL:ENSBTAP00000018574	1	1	1		1	1	1	1	1	1	1	1.6	1.6	1.6	55.207	496	496	0	5.9554	1.6	62116	62116	1			+	2	5	True	5	5	5	5			-1
+bsa;CON__P02769;CON__P02768-1	bsa;CON__P02769;CON__P02768-1	1;1;1	1;1;1	1;1;1	bsa sp|P02769|ALBU_BOVIN Serum albumin OS=Bos taurus OX=9913 GN=ALB PE=1 SV=4;;	3	1	1	1	1	1	1	1.2	1.2	1.2	69.293	607	607;607;609	0	6.3321	1.2	0	0	1			+	3	2	True	2	2	2	2			-1;-1;-1
+CON__Q03247	CON__Q03247	1	1	1		1	1	1	1	1	1	1	2.5	2.5	2.5	35.979	316	316	0	5.9375	2.5	33623	33623	0			+	4	4	True	4	4	4	4			-1
+CON__Q14CN4-1;CON__Q3SY84;CON__Q9R0H5	CON__Q14CN4-1;CON__Q3SY84;CON__Q9R0H5	1;1;1	1;1;1	1;1;1	;;	3	1	1	1	1	1	1	1.6	1.6	1.6	55.877	511	511;523;524	0	6.1238	1.6	0	0	1			+	5	1	True	1	1	1	1			-1;-1;-1